EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015001231 (Gene tree)
Gene ID: 108936618
Gene Symbol: rbm28
Alias: zgc:56258
Full Name: RNA binding motif protein 28
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 7160 bases
Position: chrKV411121.1:7409712-7416871
Accession: 108936618
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015001805	RRM_1	PF00076.22	2.6e-59	1	4
ENSSFOP00015001805	RRM_1	PF00076.22	2.6e-59	2	4
ENSSFOP00015001805	RRM_1	PF00076.22	2.6e-59	3	4
ENSSFOP00015001805	RRM_1	PF00076.22	2.6e-59	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015001845	-	3388	XM_018756115	ENSSFOP00015001805	701 (aa)	XP_018611631	A0A1W5AFR1

Gene Model

Click here to download ENSSFOG00015001231's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015001231's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015001231	rbm28	75	62.500	ENSG00000106344	RBM28	100	51.471	Homo_sapiens
ENSSFOG00015001231	rbm28	59	62.613	ENSAPOG00000015512	rbm28	57	62.921	Acanthochromis_polyacanthus
ENSSFOG00015001231	rbm28	98	58.242	ENSAMEG00000004776	RBM28	90	59.211	Ailuropoda_melanoleuca
ENSSFOG00015001231	rbm28	58	62.379	ENSACIG00000023153	rbm28	91	62.470	Amphilophus_citrinellus
ENSSFOG00015001231	rbm28	59	63.063	ENSAOCG00000000462	rbm28	57	63.288	Amphiprion_ocellaris
ENSSFOG00015001231	rbm28	59	62.896	ENSAPEG00000012996	rbm28	100	56.641	Amphiprion_percula
ENSSFOG00015001231	rbm28	59	55.769	ENSATEG00000001672	rbm28	100	52.362	Anabas_testudineus
ENSSFOG00015001231	rbm28	93	62.500	ENSANAG00000033922	RBM28	87	58.427	Aotus_nancymaae
ENSSFOG00015001231	rbm28	100	54.830	ENSACLG00000025024	rbm28	58	61.247	Astatotilapia_calliptera
ENSSFOG00015001231	rbm28	60	61.111	ENSAMXG00000000763	rbm28	98	61.593	Astyanax_mexicanus
ENSSFOG00015001231	rbm28	91	62.500	ENSCJAG00000017731	RBM28	85	58.202	Callithrix_jacchus
ENSSFOG00015001231	rbm28	69	60.000	ENSTSYG00000002892	RBM28	79	60.000	Carlito_syrichta
ENSSFOG00015001231	rbm28	75	62.500	ENSCATG00000040497	RBM28	77	62.500	Cercocebus_atys
ENSSFOG00015001231	rbm28	100	49.098	ENSCLAG00000003707	RBM28	61	56.473	Chinchilla_lanigera
ENSSFOG00015001231	rbm28	69	54.420	ENSCSAG00000010161	RBM28	56	59.674	Chlorocebus_sabaeus
ENSSFOG00015001231	rbm28	57	56.452	ENSCHOG00000001994	-	63	56.452	Choloepus_hoffmanni
ENSSFOG00015001231	rbm28	51	77.778	ENSCPBG00000018088	RBM28	58	77.778	Chrysemys_picta_bellii
ENSSFOG00015001231	rbm28	93	40.764	ENSCING00000009238	-	83	40.670	Ciona_intestinalis
ENSSFOG00015001231	rbm28	75	62.500	ENSCANG00000038397	RBM28	65	70.297	Colobus_angolensis_palliatus
ENSSFOG00015001231	rbm28	68	53.614	ENSCGRG00001021278	Rbm28	81	63.366	Cricetulus_griseus_chok1gshd
ENSSFOG00015001231	rbm28	68	53.614	ENSCGRG00000005098	Rbm28	98	51.523	Cricetulus_griseus_crigri
ENSSFOG00015001231	rbm28	100	54.172	ENSCSEG00000004212	rbm28	100	53.642	Cynoglossus_semilaevis
ENSSFOG00015001231	rbm28	60	60.403	ENSCVAG00000010493	rbm28	98	54.617	Cyprinodon_variegatus
ENSSFOG00015001231	rbm28	100	51.978	ENSDARG00000025332	rbm28	100	51.705	Danio_rerio
ENSSFOG00015001231	rbm28	80	55.870	ENSDORG00000004184	Rbm28	87	57.848	Dipodomys_ordii
ENSSFOG00015001231	rbm28	65	40.254	FBgn0260456	CG4806	67	37.662	Drosophila_melanogaster
ENSSFOG00015001231	rbm28	58	54.245	ENSETEG00000007130	RBM28	82	61.353	Echinops_telfairi
ENSSFOG00015001231	rbm28	99	43.121	ENSEBUG00000004419	rbm28	97	42.981	Eptatretus_burgeri
ENSSFOG00015001231	rbm28	70	53.922	ENSEASG00005008528	RBM28	100	52.308	Equus_asinus_asinus
ENSSFOG00015001231	rbm28	70	53.529	ENSECAG00000007745	RBM28	86	59.389	Equus_caballus
ENSSFOG00015001231	rbm28	67	49.899	ENSEEUG00000002389	RBM28	84	64.851	Erinaceus_europaeus
ENSSFOG00015001231	rbm28	100	55.626	ENSELUG00000020602	rbm28	59	60.860	Esox_lucius
ENSSFOG00015001231	rbm28	100	54.271	ENSFCAG00000000946	RBM28	79	62.500	Felis_catus
ENSSFOG00015001231	rbm28	100	54.029	ENSFDAG00000010169	RBM28	59	57.399	Fukomys_damarensis
ENSSFOG00015001231	rbm28	99	55.571	ENSGMOG00000007091	rbm28	98	57.143	Gadus_morhua
ENSSFOG00015001231	rbm28	60	59.243	ENSGAFG00000004802	rbm28	96	59.020	Gambusia_affinis
ENSSFOG00015001231	rbm28	60	60.739	ENSGACG00000012612	rbm28	100	55.890	Gasterosteus_aculeatus
ENSSFOG00015001231	rbm28	99	46.853	ENSGAGG00000008873	RBM28	86	58.824	Gopherus_agassizii
ENSSFOG00015001231	rbm28	66	56.122	ENSGGOG00000004644	RBM28	59	58.744	Gorilla_gorilla
ENSSFOG00015001231	rbm28	94	55.540	ENSHBUG00000009611	rbm28	55	63.342	Haplochromis_burtoni
ENSSFOG00015001231	rbm28	100	52.701	ENSHGLG00000005409	RBM28	59	56.951	Heterocephalus_glaber_female
ENSSFOG00015001231	rbm28	100	52.701	ENSHGLG00100016458	RBM28	59	56.951	Heterocephalus_glaber_male
ENSSFOG00015001231	rbm28	85	53.828	ENSHCOG00000010597	rbm28	98	46.047	Hippocampus_comes
ENSSFOG00015001231	rbm28	58	51.551	ENSIPUG00000007103	rbm28	78	51.733	Ictalurus_punctatus
ENSSFOG00015001231	rbm28	68	54.728	ENSSTOG00000002169	RBM28	57	56.889	Ictidomys_tridecemlineatus
ENSSFOG00015001231	rbm28	62	54.013	ENSJJAG00000022400	Rbm28	57	56.829	Jaculus_jaculus
ENSSFOG00015001231	rbm28	60	58.166	ENSKMAG00000013348	rbm28	99	53.846	Kryptolebias_marmoratus
ENSSFOG00015001231	rbm28	60	61.991	ENSLBEG00000012998	rbm28	100	53.748	Labrus_bergylta
ENSSFOG00015001231	rbm28	100	57.778	ENSLOCG00000015541	rbm28	98	55.111	Lepisosteus_oculatus
ENSSFOG00015001231	rbm28	75	62.500	ENSMFAG00000031036	RBM28	77	62.500	Macaca_fascicularis
ENSSFOG00015001231	rbm28	75	62.500	ENSMMUG00000007250	RBM28	88	59.307	Macaca_mulatta
ENSSFOG00015001231	rbm28	99	53.646	ENSMNEG00000036970	RBM28	87	59.740	Macaca_nemestrina
ENSSFOG00015001231	rbm28	99	57.386	ENSMAMG00000008525	rbm28	99	57.503	Mastacembelus_armatus
ENSSFOG00015001231	rbm28	92	54.202	ENSMZEG00005019625	rbm28	63	61.247	Maylandia_zebra
ENSSFOG00015001231	rbm28	68	53.187	ENSMAUG00000002263	Rbm28	98	51.832	Mesocricetus_auratus
ENSSFOG00015001231	rbm28	67	54.709	ENSMICG00000000107	RBM28	80	61.783	Microcebus_murinus
ENSSFOG00015001231	rbm28	99	51.895	ENSMOCG00000014615	Rbm28	57	57.870	Microtus_ochrogaster
ENSSFOG00015001231	rbm28	61	62.118	ENSMMOG00000008600	rbm28	90	62.175	Mola_mola
ENSSFOG00015001231	rbm28	65	56.612	ENSMODG00000015151	RBM28	55	60.187	Monodelphis_domestica
ENSSFOG00015001231	rbm28	66	55.081	MGP_CAROLIEiJ_G0028162	Rbm28	100	52.163	Mus_caroli
ENSSFOG00015001231	rbm28	100	53.080	ENSMUSG00000029701	Rbm28	100	51.905	Mus_musculus
ENSSFOG00015001231	rbm28	100	53.272	MGP_PahariEiJ_G0021920	Rbm28	98	53.226	Mus_pahari
ENSSFOG00015001231	rbm28	100	52.818	MGP_SPRETEiJ_G0029162	Rbm28	100	51.774	Mus_spretus
ENSSFOG00015001231	rbm28	70	54.191	ENSMPUG00000006511	RBM28	58	57.812	Mustela_putorius_furo
ENSSFOG00015001231	rbm28	66	55.894	ENSMLUG00000002186	RBM28	56	58.741	Myotis_lucifugus
ENSSFOG00015001231	rbm28	100	52.815	ENSNGAG00000006480	-	57	58.548	Nannospalax_galili
ENSSFOG00015001231	rbm28	74	62.500	ENSNLEG00000012307	RBM28	86	61.722	Nomascus_leucogenys
ENSSFOG00015001231	rbm28	84	65.806	ENSMEUG00000009611	RBM28	81	65.806	Notamacropus_eugenii
ENSSFOG00015001231	rbm28	74	61.202	ENSODEG00000013217	-	80	60.000	Octodon_degus
ENSSFOG00015001231	rbm28	60	60.948	ENSONIG00000014924	rbm28	100	55.411	Oreochromis_niloticus
ENSSFOG00015001231	rbm28	99	54.605	ENSORLG00000009636	rbm28	99	53.947	Oryzias_latipes
ENSSFOG00015001231	rbm28	59	61.136	ENSORLG00020002123	rbm28	99	54.714	Oryzias_latipes_hni
ENSSFOG00015001231	rbm28	88	62.350	ENSORLG00015015030	rbm28	99	61.848	Oryzias_latipes_hsok
ENSSFOG00015001231	rbm28	60	61.319	ENSOMEG00000007801	rbm28	100	54.796	Oryzias_melastigma
ENSSFOG00015001231	rbm28	83	60.000	ENSOGAG00000006011	RBM28	76	60.000	Otolemur_garnettii
ENSSFOG00015001231	rbm28	75	62.500	ENSPPAG00000041730	RBM28	81	62.500	Pan_paniscus
ENSSFOG00015001231	rbm28	100	54.581	ENSPPRG00000004420	RBM28	77	62.500	Panthera_pardus
ENSSFOG00015001231	rbm28	100	54.522	ENSPTIG00000008550	RBM28	77	62.500	Panthera_tigris_altaica
ENSSFOG00015001231	rbm28	75	62.500	ENSPTRG00000019659	RBM28	81	62.500	Pan_troglodytes
ENSSFOG00015001231	rbm28	98	63.158	ENSPANG00000022295	RBM28	87	59.907	Papio_anubis
ENSSFOG00015001231	rbm28	99	60.897	ENSPKIG00000023453	rbm28	87	69.772	Paramormyrops_kingsleyae
ENSSFOG00015001231	rbm28	58	60.784	ENSPMGG00000012840	rbm28	56	61.323	Periophthalmus_magnuspinnatus
ENSSFOG00015001231	rbm28	99	52.789	ENSPEMG00000020673	Rbm28	58	58.042	Peromyscus_maniculatus_bairdii
ENSSFOG00015001231	rbm28	89	56.138	ENSPCIG00000012810	RBM28	56	61.429	Phascolarctos_cinereus
ENSSFOG00015001231	rbm28	60	59.071	ENSPFOG00000018209	rbm28	100	52.597	Poecilia_formosa
ENSSFOG00015001231	rbm28	59	59.234	ENSPLAG00000016078	rbm28	95	54.244	Poecilia_latipinna
ENSSFOG00015001231	rbm28	60	58.889	ENSPMEG00000004292	rbm28	100	53.250	Poecilia_mexicana
ENSSFOG00015001231	rbm28	58	59.404	ENSPREG00000014287	rbm28	98	53.262	Poecilia_reticulata
ENSSFOG00015001231	rbm28	76	54.237	ENSPCAG00000008223	RBM28	82	54.039	Procavia_capensis
ENSSFOG00015001231	rbm28	83	65.888	ENSPVAG00000005443	RBM28	68	69.849	Pteropus_vampyrus
ENSSFOG00015001231	rbm28	100	54.113	ENSPNYG00000014003	rbm28	58	61.024	Pundamilia_nyererei
ENSSFOG00015001231	rbm28	100	52.493	ENSRNOG00000005468	Rbm28	58	57.303	Rattus_norvegicus
ENSSFOG00015001231	rbm28	66	62.201	ENSSBOG00000012308	RBM28	73	62.201	Saimiri_boliviensis_boliviensis
ENSSFOG00015001231	rbm28	96	52.559	ENSSHAG00000017017	RBM28	58	58.782	Sarcophilus_harrisii
ENSSFOG00015001231	rbm28	59	60.714	ENSSMAG00000003885	rbm28	85	61.671	Scophthalmus_maximus
ENSSFOG00015001231	rbm28	60	62.416	ENSSDUG00000014270	rbm28	86	62.864	Seriola_dumerili
ENSSFOG00015001231	rbm28	60	61.969	ENSSLDG00000020099	rbm28	57	61.969	Seriola_lalandi_dorsalis
ENSSFOG00015001231	rbm28	77	61.892	ENSSARG00000008303	RBM28	77	60.695	Sorex_araneus
ENSSFOG00015001231	rbm28	69	67.647	ENSSPUG00000000838	RBM28	75	67.647	Sphenodon_punctatus
ENSSFOG00015001231	rbm28	60	61.348	ENSSPAG00000023305	rbm28	61	61.348	Stegastes_partitus
ENSSFOG00015001231	rbm28	100	54.058	ENSSSCG00000031847	RBM28	58	57.428	Sus_scrofa
ENSSFOG00015001231	rbm28	59	59.459	ENSTRUG00000013311	rbm28	57	58.837	Takifugu_rubripes
ENSSFOG00015001231	rbm28	99	53.125	ENSTNIG00000017962	rbm28	58	60.455	Tetraodon_nigroviridis
ENSSFOG00015001231	rbm28	80	60.129	ENSTBEG00000012749	RBM28	76	59.561	Tupaia_belangeri
ENSSFOG00015001231	rbm28	89	63.158	ENSTTRG00000013647	RBM28	85	62.500	Tursiops_truncatus
ENSSFOG00015001231	rbm28	100	48.837	ENSUAMG00000006949	RBM28	84	63.810	Ursus_americanus
ENSSFOG00015001231	rbm28	84	48.466	ENSVPAG00000008304	RBM28	72	73.585	Vicugna_pacos
ENSSFOG00015001231	rbm28	100	52.523	ENSVVUG00000007270	RBM28	100	52.523	Vulpes_vulpes
ENSSFOG00015001231	rbm28	60	55.631	ENSXCOG00000020357	rbm28	91	55.631	Xiphophorus_couchianus
ENSSFOG00015001231	rbm28	58	60.690	ENSXMAG00000004415	rbm28	99	54.558	Xiphophorus_maculatus