EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015001395 (Gene tree)
Gene ID: 108926864
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 16743 bases
Position: chrKV410861.1:887144-903886
Accession: 108926864
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015002158	RRM_1	PF00076.22	3.1e-34	1	2
ENSSFOP00015002158	RRM_1	PF00076.22	3.1e-34	2	2
ENSSFOP00015002146	RRM_1	PF00076.22	3.1e-34	1	2
ENSSFOP00015002146	RRM_1	PF00076.22	3.1e-34	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015002200	-	1386	-	ENSSFOP00015002158	461 (aa)	-	-
ENSSFOT00015002187	-	1420	XM_018739831	ENSSFOP00015002146	468 (aa)	XP_018595347	-

Gene Model

Click here to download ENSSFOG00015001395's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015001395's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015001395	pspc1	85	60.291	ENSSFOG00015009289	sfpq	75	63.333
ENSSFOG00015001395	pspc1	61	71.329	ENSSFOG00015000137	-	88	59.241
ENSSFOG00015001395	pspc1	83	65.561	ENSSFOG00015008964	nono	89	70.988

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015001395	pspc1	90	78.372	ENSG00000121390	PSPC1	83	85.583	Homo_sapiens
ENSSFOG00015001395	pspc1	99	76.956	ENSAPOG00000015946	pspc1	88	74.840	Acanthochromis_polyacanthus
ENSSFOG00015001395	pspc1	90	78.241	ENSAMEG00000017420	PSPC1	82	79.021	Ailuropoda_melanoleuca
ENSSFOG00015001395	pspc1	99	68.547	ENSACIG00000018695	pspc1	87	66.102	Amphilophus_citrinellus
ENSSFOG00015001395	pspc1	99	75.532	ENSAOCG00000005279	pspc1	88	73.278	Amphiprion_ocellaris
ENSSFOG00015001395	pspc1	99	76.119	ENSAPEG00000015927	pspc1	88	73.729	Amphiprion_percula
ENSSFOG00015001395	pspc1	99	68.103	ENSATEG00000004878	pspc1	87	65.953	Anabas_testudineus
ENSSFOG00015001395	pspc1	87	73.031	ENSAPLG00000006246	PSPC1	91	77.717	Anas_platyrhynchos
ENSSFOG00015001395	pspc1	74	71.225	ENSAPLG00000003643	SFPQ	79	61.045	Anas_platyrhynchos
ENSSFOG00015001395	pspc1	99	72.083	ENSACAG00000002093	PSPC1	81	77.209	Anolis_carolinensis
ENSSFOG00015001395	pspc1	74	62.465	ENSACAG00000013307	-	61	61.713	Anolis_carolinensis
ENSSFOG00015001395	pspc1	90	78.605	ENSANAG00000000059	PSPC1	83	83.129	Aotus_nancymaae
ENSSFOG00015001395	pspc1	99	67.603	ENSACLG00000027220	pspc1	88	64.421	Astatotilapia_calliptera
ENSSFOG00015001395	pspc1	99	76.569	ENSAMXG00000036881	pspc1	88	79.368	Astyanax_mexicanus
ENSSFOG00015001395	pspc1	89	78.738	ENSBTAG00000003934	PSPC1	82	79.294	Bos_taurus
ENSSFOG00015001395	pspc1	90	78.372	ENSCJAG00000004554	PSPC1	82	79.391	Callithrix_jacchus
ENSSFOG00015001395	pspc1	90	78.241	ENSCAFG00020002009	PSPC1	83	85.583	Canis_lupus_dingo
ENSSFOG00015001395	pspc1	89	78.738	ENSCHIG00000016708	PSPC1	82	79.294	Capra_hircus
ENSSFOG00015001395	pspc1	85	68.395	ENSTSYG00000032882	PSPC1	80	74.859	Carlito_syrichta
ENSSFOG00015001395	pspc1	90	78.140	ENSCPOG00000000395	PSPC1	84	85.583	Cavia_porcellus
ENSSFOG00015001395	pspc1	90	78.605	ENSCCAG00000033498	PSPC1	82	79.391	Cebus_capucinus
ENSSFOG00015001395	pspc1	90	78.372	ENSCATG00000036434	PSPC1	90	85.583	Cercocebus_atys
ENSSFOG00015001395	pspc1	78	77.513	ENSCLAG00000005241	PSPC1	81	79.890	Chinchilla_lanigera
ENSSFOG00015001395	pspc1	89	73.709	ENSCHOG00000008913	PSPC1	81	74.292	Choloepus_hoffmanni
ENSSFOG00015001395	pspc1	99	72.956	ENSCPBG00000020859	PSPC1	81	76.995	Chrysemys_picta_bellii
ENSSFOG00015001395	pspc1	61	59.722	ENSCSAVG00000003533	-	53	60.791	Ciona_savignyi
ENSSFOG00015001395	pspc1	56	88.168	ENSCANG00000018948	PSPC1	87	88.168	Colobus_angolensis_palliatus
ENSSFOG00015001395	pspc1	90	78.605	ENSCGRG00001018368	Pspc1	82	79.157	Cricetulus_griseus_chok1gshd
ENSSFOG00015001395	pspc1	90	78.605	ENSCGRG00000011724	Pspc1	82	79.157	Cricetulus_griseus_crigri
ENSSFOG00015001395	pspc1	99	67.804	ENSCVAG00000007679	-	86	65.605	Cyprinodon_variegatus
ENSSFOG00015001395	pspc1	99	75.906	ENSDARG00000006621	pspc1	100	74.634	Danio_rerio
ENSSFOG00015001395	pspc1	89	78.972	ENSDNOG00000011078	PSPC1	81	79.529	Dasypus_novemcinctus
ENSSFOG00015001395	pspc1	99	71.399	ENSDORG00000016050	Pspc1	81	75.701	Dipodomys_ordii
ENSSFOG00015001395	pspc1	52	84.158	ENSETEG00000000502	-	62	84.158	Echinops_telfairi
ENSSFOG00015001395	pspc1	62	46.006	ENSEBUG00000010133	pspc1	74	48.582	Eptatretus_burgeri
ENSSFOG00015001395	pspc1	99	60.041	ENSEBUG00000003964	-	62	72.543	Eptatretus_burgeri
ENSSFOG00015001395	pspc1	89	78.972	ENSEASG00005000119	PSPC1	84	85.015	Equus_asinus_asinus
ENSSFOG00015001395	pspc1	89	78.972	ENSECAG00000017286	PSPC1	84	85.015	Equus_caballus
ENSSFOG00015001395	pspc1	56	74.231	ENSEEUG00000011288	-	51	74.231	Erinaceus_europaeus
ENSSFOG00015001395	pspc1	100	74.174	ENSELUG00000003746	pspc1	77	88.545	Esox_lucius
ENSSFOG00015001395	pspc1	90	78.605	ENSFCAG00000027841	PSPC1	83	85.583	Felis_catus
ENSSFOG00015001395	pspc1	99	73.795	ENSFALG00000008750	PSPC1	80	77.934	Ficedula_albicollis
ENSSFOG00015001395	pspc1	90	78.140	ENSFDAG00000002617	PSPC1	84	78.923	Fukomys_damarensis
ENSSFOG00015001395	pspc1	100	68.577	ENSGMOG00000015074	pspc1	87	67.511	Gadus_morhua
ENSSFOG00015001395	pspc1	99	73.795	ENSGALG00000017142	PSPC1	81	77.934	Gallus_gallus
ENSSFOG00015001395	pspc1	69	81.346	ENSGAFG00000006327	pspc1	68	81.346	Gambusia_affinis
ENSSFOG00015001395	pspc1	99	69.017	ENSGACG00000014901	pspc1	92	78.354	Gasterosteus_aculeatus
ENSSFOG00015001395	pspc1	99	72.956	ENSGAGG00000019164	PSPC1	81	76.995	Gopherus_agassizii
ENSSFOG00015001395	pspc1	74	70.085	ENSGAGG00000017325	-	60	61.404	Gopherus_agassizii
ENSSFOG00015001395	pspc1	90	78.372	ENSGGOG00000003414	PSPC1	83	85.583	Gorilla_gorilla
ENSSFOG00015001395	pspc1	99	76.119	ENSHBUG00000001139	pspc1	88	72.349	Haplochromis_burtoni
ENSSFOG00015001395	pspc1	90	78.372	ENSHGLG00000018811	PSPC1	82	78.605	Heterocephalus_glaber_female
ENSSFOG00015001395	pspc1	62	85.862	ENSHGLG00100007962	PSPC1	88	86.458	Heterocephalus_glaber_male
ENSSFOG00015001395	pspc1	82	73.766	ENSHCOG00000013251	pspc1	85	72.135	Hippocampus_comes
ENSSFOG00015001395	pspc1	99	79.957	ENSIPUG00000013192	pspc1	88	78.678	Ictalurus_punctatus
ENSSFOG00015001395	pspc1	100	76.151	ENSSTOG00000026833	PSPC1	83	85.583	Ictidomys_tridecemlineatus
ENSSFOG00015001395	pspc1	89	78.271	ENSJJAG00000018334	Pspc1	81	79.059	Jaculus_jaculus
ENSSFOG00015001395	pspc1	99	59.871	ENSKMAG00000013525	-	66	73.776	Kryptolebias_marmoratus
ENSSFOG00015001395	pspc1	99	69.897	ENSLBEG00000004474	pspc1	88	69.311	Labrus_bergylta
ENSSFOG00015001395	pspc1	89	77.700	ENSLACG00000010762	PSPC1	88	74.633	Latimeria_chalumnae
ENSSFOG00015001395	pspc1	90	83.488	ENSLOCG00000010832	pspc1	91	80.126	Lepisosteus_oculatus
ENSSFOG00015001395	pspc1	90	78.605	ENSLAFG00000010968	PSPC1	82	79.391	Loxodonta_africana
ENSSFOG00015001395	pspc1	89	78.505	ENSMFAG00000032728	PSPC1	91	85.846	Macaca_fascicularis
ENSSFOG00015001395	pspc1	89	78.505	ENSMMUG00000020262	PSPC1	88	85.802	Macaca_mulatta
ENSSFOG00015001395	pspc1	89	78.505	ENSMNEG00000027401	PSPC1	85	81.454	Macaca_nemestrina
ENSSFOG00015001395	pspc1	76	79.235	ENSMLEG00000039043	PSPC1	85	80.165	Mandrillus_leucophaeus
ENSSFOG00015001395	pspc1	99	73.431	ENSMAMG00000004333	pspc1	88	71.102	Mastacembelus_armatus
ENSSFOG00015001395	pspc1	99	67.603	ENSMZEG00005005726	pspc1	88	64.421	Maylandia_zebra
ENSSFOG00015001395	pspc1	88	72.922	ENSMGAG00000015134	PSPC1	91	77.568	Meleagris_gallopavo
ENSSFOG00015001395	pspc1	83	75.758	ENSMAUG00000021067	Pspc1	87	76.010	Mesocricetus_auratus
ENSSFOG00015001395	pspc1	100	76.360	ENSMICG00000013970	PSPC1	83	85.583	Microcebus_murinus
ENSSFOG00015001395	pspc1	89	78.738	ENSMOCG00000006060	Pspc1	81	79.529	Microtus_ochrogaster
ENSSFOG00015001395	pspc1	69	60.883	ENSMMOG00000004352	pspc1	58	61.076	Mola_mola
ENSSFOG00015001395	pspc1	89	78.555	ENSMODG00000008029	PSPC1	69	78.271	Monodelphis_domestica
ENSSFOG00015001395	pspc1	99	73.932	ENSMALG00000008914	pspc1	87	69.008	Monopterus_albus
ENSSFOG00015001395	pspc1	89	78.322	MGP_CAROLIEiJ_G0019341	Pspc1	86	81.000	Mus_caroli
ENSSFOG00015001395	pspc1	89	78.322	ENSMUSG00000021938	Pspc1	86	81.000	Mus_musculus
ENSSFOG00015001395	pspc1	89	78.322	MGP_PahariEiJ_G0030359	Pspc1	86	81.000	Mus_pahari
ENSSFOG00015001395	pspc1	89	78.322	MGP_SPRETEiJ_G0020232	Pspc1	86	81.000	Mus_spretus
ENSSFOG00015001395	pspc1	90	78.241	ENSMPUG00000013347	PSPC1	82	79.021	Mustela_putorius_furo
ENSSFOG00015001395	pspc1	89	77.726	ENSMLUG00000017663	PSPC1	81	78.505	Myotis_lucifugus
ENSSFOG00015001395	pspc1	100	74.895	ENSNGAG00000011271	Pspc1	82	79.391	Nannospalax_galili
ENSSFOG00015001395	pspc1	69	78.683	ENSNBRG00000014059	pspc1	78	78.261	Neolamprologus_brichardi
ENSSFOG00015001395	pspc1	90	78.372	ENSNLEG00000001294	PSPC1	82	79.391	Nomascus_leucogenys
ENSSFOG00015001395	pspc1	72	81.959	ENSMEUG00000000476	PSPC1	65	81.959	Notamacropus_eugenii
ENSSFOG00015001395	pspc1	100	66.736	ENSODEG00000019012	-	77	75.871	Octodon_degus
ENSSFOG00015001395	pspc1	100	64.435	ENSODEG00000007817	-	81	67.529	Octodon_degus
ENSSFOG00015001395	pspc1	99	76.333	ENSONIG00000012010	pspc1	87	72.557	Oreochromis_niloticus
ENSSFOG00015001395	pspc1	87	61.483	ENSOANG00000011381	-	83	61.687	Ornithorhynchus_anatinus
ENSSFOG00015001395	pspc1	76	79.292	ENSOANG00000009017	-	91	79.614	Ornithorhynchus_anatinus
ENSSFOG00015001395	pspc1	90	79.032	ENSOCUG00000006153	PSPC1	81	79.907	Oryctolagus_cuniculus
ENSSFOG00015001395	pspc1	99	73.134	ENSORLG00000004232	-	87	69.198	Oryzias_latipes
ENSSFOG00015001395	pspc1	99	73.348	ENSORLG00020000578	PSPC1	87	68.987	Oryzias_latipes_hni
ENSSFOG00015001395	pspc1	99	73.348	ENSORLG00015017480	pspc1	87	67.556	Oryzias_latipes_hsok
ENSSFOG00015001395	pspc1	90	78.605	ENSOGAG00000012643	PSPC1	81	79.391	Otolemur_garnettii
ENSSFOG00015001395	pspc1	88	78.404	ENSOARG00000014163	PSPC1	87	76.596	Ovis_aries
ENSSFOG00015001395	pspc1	89	72.792	ENSPPAG00000009836	PSPC1	92	85.583	Pan_paniscus
ENSSFOG00015001395	pspc1	90	78.605	ENSPPRG00000008833	PSPC1	82	79.391	Panthera_pardus
ENSSFOG00015001395	pspc1	76	78.962	ENSPTIG00000016917	PSPC1	76	79.890	Panthera_tigris_altaica
ENSSFOG00015001395	pspc1	89	78.689	ENSPTRG00000005677	PSPC1	83	85.583	Pan_troglodytes
ENSSFOG00015001395	pspc1	90	78.372	ENSPANG00000001992	PSPC1	90	85.627	Papio_anubis
ENSSFOG00015001395	pspc1	100	91.453	ENSPKIG00000003578	pspc1	89	91.239	Paramormyrops_kingsleyae
ENSSFOG00015001395	pspc1	99	72.327	ENSPSIG00000005168	PSPC1	81	76.526	Pelodiscus_sinensis
ENSSFOG00015001395	pspc1	62	77.931	ENSPMGG00000015135	pspc1	79	77.700	Periophthalmus_magnuspinnatus
ENSSFOG00015001395	pspc1	90	78.372	ENSPEMG00000015214	Pspc1	82	79.157	Peromyscus_maniculatus_bairdii
ENSSFOG00015001395	pspc1	56	45.318	ENSPMAG00000004618	pspc1	81	45.318	Petromyzon_marinus
ENSSFOG00015001395	pspc1	90	78.140	ENSPCIG00000017680	PSPC1	82	78.689	Phascolarctos_cinereus
ENSSFOG00015001395	pspc1	99	70.886	ENSPFOG00000003362	pspc1	88	68.930	Poecilia_formosa
ENSSFOG00015001395	pspc1	81	59.278	ENSPLAG00000004407	-	55	59.847	Poecilia_latipinna
ENSSFOG00015001395	pspc1	99	70.886	ENSPLAG00000011540	pspc1	87	68.930	Poecilia_latipinna
ENSSFOG00015001395	pspc1	81	59.278	ENSPMEG00000001025	-	54	59.847	Poecilia_mexicana
ENSSFOG00015001395	pspc1	99	70.464	ENSPMEG00000008322	pspc1	87	68.519	Poecilia_mexicana
ENSSFOG00015001395	pspc1	99	70.042	ENSPREG00000007786	pspc1	87	68.107	Poecilia_reticulata
ENSSFOG00015001395	pspc1	90	77.829	ENSPPYG00000005186	PSPC1	85	81.095	Pongo_abelii
ENSSFOG00015001395	pspc1	100	72.176	ENSPCOG00000014364	PSPC1	81	74.941	Propithecus_coquereli
ENSSFOG00015001395	pspc1	99	74.370	ENSPVAG00000005036	PSPC1	82	78.824	Pteropus_vampyrus
ENSSFOG00015001395	pspc1	99	67.603	ENSPNYG00000008893	pspc1	88	64.421	Pundamilia_nyererei
ENSSFOG00015001395	pspc1	99	81.023	ENSPNAG00000016511	pspc1	85	81.519	Pygocentrus_nattereri
ENSSFOG00015001395	pspc1	90	78.372	ENSRNOG00000020782	Pspc1	86	80.846	Rattus_norvegicus
ENSSFOG00015001395	pspc1	90	78.605	ENSRBIG00000036057	PSPC1	91	85.583	Rhinopithecus_bieti
ENSSFOG00015001395	pspc1	90	78.372	ENSRROG00000036334	PSPC1	83	85.583	Rhinopithecus_roxellana
ENSSFOG00015001395	pspc1	78	70.190	ENSSBOG00000028172	PSPC1	90	84.058	Saimiri_boliviensis_boliviensis
ENSSFOG00015001395	pspc1	90	72.454	ENSSHAG00000004696	PSPC1	82	72.960	Sarcophilus_harrisii
ENSSFOG00015001395	pspc1	99	73.795	ENSSMAG00000001761	pspc1	83	81.381	Scophthalmus_maximus
ENSSFOG00015001395	pspc1	99	74.486	ENSSDUG00000010651	pspc1	88	72.934	Seriola_dumerili
ENSSFOG00015001395	pspc1	99	67.804	ENSSLDG00000004284	pspc1	87	66.955	Seriola_lalandi_dorsalis
ENSSFOG00015001395	pspc1	89	72.664	ENSSARG00000000888	PSPC1	82	72.941	Sorex_araneus
ENSSFOG00015001395	pspc1	99	64.681	ENSSPUG00000008550	PSPC1	80	68.496	Sphenodon_punctatus
ENSSFOG00015001395	pspc1	99	51.050	ENSSPUG00000001136	-	58	55.808	Sphenodon_punctatus
ENSSFOG00015001395	pspc1	99	75.676	ENSSPAG00000001921	pspc1	88	73.739	Stegastes_partitus
ENSSFOG00015001395	pspc1	89	78.505	ENSSSCG00000009569	PSPC1	84	85.494	Sus_scrofa
ENSSFOG00015001395	pspc1	99	73.795	ENSTGUG00000011295	PSPC1	91	77.934	Taeniopygia_guttata
ENSSFOG00015001395	pspc1	100	68.499	ENSTRUG00000011335	pspc1	88	64.066	Takifugu_rubripes
ENSSFOG00015001395	pspc1	99	68.017	ENSTNIG00000010358	pspc1	84	70.433	Tetraodon_nigroviridis
ENSSFOG00015001395	pspc1	99	64.632	ENSTBEG00000002361	PSPC1	77	71.970	Tupaia_belangeri
ENSSFOG00015001395	pspc1	89	78.738	ENSTTRG00000003343	PSPC1	82	79.294	Tursiops_truncatus
ENSSFOG00015001395	pspc1	62	85.911	ENSUAMG00000012309	PSPC1	83	86.458	Ursus_americanus
ENSSFOG00015001395	pspc1	90	78.009	ENSUMAG00000013993	PSPC1	91	85.276	Ursus_maritimus
ENSSFOG00015001395	pspc1	86	76.329	ENSVPAG00000010029	PSPC1	91	80.165	Vicugna_pacos
ENSSFOG00015001395	pspc1	90	78.241	ENSVVUG00000006414	PSPC1	85	85.583	Vulpes_vulpes
ENSSFOG00015001395	pspc1	69	80.122	ENSXCOG00000017438	pspc1	77	80.368	Xiphophorus_couchianus
ENSSFOG00015001395	pspc1	69	80.428	ENSXMAG00000007929	pspc1	77	80.675	Xiphophorus_maculatus