EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015001509 (Gene tree)
Gene ID: 108933155
Gene Symbol: cmss1
Alias: zgc:101814
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 80884 bases
Position: chrKV411016.1:2622679-2703562
Accession: 108933155
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015002233	CMS1	PF14617.6	8.3e-31	1	1
ENSSFOP00015002246	CMS1	PF14617.6	8.3e-31	1	1
ENSSFOP00015002233	DEAD	PF00270.29	1.9e-06	1	1
ENSSFOP00015002246	DEAD	PF00270.29	2.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015002276	-	1891	-	ENSSFOP00015002233	290 (aa)	-	-
ENSSFOT00015002289	-	1789	XM_018749991	ENSSFOP00015002246	290 (aa)	XP_018605507	A0A1W4ZP84

Gene Model

Click here to download ENSSFOG00015001509's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015001509's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015001509	cmss1	100	54.762	ENSG00000184220	CMSS1	98	63.750	Homo_sapiens
ENSSFOG00015001509	cmss1	90	63.602	ENSAPOG00000010604	cmss1	82	75.862	Acanthochromis_polyacanthus
ENSSFOG00015001509	cmss1	87	58.730	ENSAMEG00000004092	CMSS1	88	61.039	Ailuropoda_melanoleuca
ENSSFOG00015001509	cmss1	70	65.025	ENSACIG00000021854	cmss1	75	65.025	Amphilophus_citrinellus
ENSSFOG00015001509	cmss1	100	61.724	ENSAOCG00000013361	cmss1	100	63.448	Amphiprion_ocellaris
ENSSFOG00015001509	cmss1	100	61.724	ENSAPEG00000005829	cmss1	100	61.724	Amphiprion_percula
ENSSFOG00015001509	cmss1	100	60.345	ENSATEG00000008209	cmss1	100	61.168	Anabas_testudineus
ENSSFOG00015001509	cmss1	79	63.913	ENSAPLG00000010542	CMSS1	99	63.913	Anas_platyrhynchos
ENSSFOG00015001509	cmss1	87	59.449	ENSACAG00000011065	CMSS1	91	59.036	Anolis_carolinensis
ENSSFOG00015001509	cmss1	100	54.082	ENSANAG00000023565	CMSS1	100	54.082	Aotus_nancymaae
ENSSFOG00015001509	cmss1	100	62.500	ENSACLG00000027294	cmss1	100	62.799	Astatotilapia_calliptera
ENSSFOG00015001509	cmss1	100	57.483	ENSAMXG00000002046	cmss1	100	58.644	Astyanax_mexicanus
ENSSFOG00015001509	cmss1	100	54.483	ENSBTAG00000013663	CMSS1	100	53.242	Bos_taurus
ENSSFOG00015001509	cmss1	100	55.782	ENSCJAG00000000610	CMSS1	100	55.782	Callithrix_jacchus
ENSSFOG00015001509	cmss1	83	60.000	ENSCAFG00000009230	CMSS1	82	60.435	Canis_familiaris
ENSSFOG00015001509	cmss1	97	54.093	ENSCAFG00020009464	-	82	60.435	Canis_lupus_dingo
ENSSFOG00015001509	cmss1	70	61.386	ENSCAFG00020024156	-	63	61.386	Canis_lupus_dingo
ENSSFOG00015001509	cmss1	87	57.769	ENSCHIG00000013003	CMSS1	82	59.227	Capra_hircus
ENSSFOG00015001509	cmss1	82	61.345	ENSTSYG00000009266	CMSS1	87	62.174	Carlito_syrichta
ENSSFOG00015001509	cmss1	64	55.914	ENSCAPG00000013584	CMSS1	87	55.914	Cavia_aperea
ENSSFOG00015001509	cmss1	100	55.517	ENSCPOG00000014680	CMSS1	100	53.741	Cavia_porcellus
ENSSFOG00015001509	cmss1	100	55.782	ENSCCAG00000034685	CMSS1	100	55.782	Cebus_capucinus
ENSSFOG00015001509	cmss1	100	55.137	ENSCATG00000031980	CMSS1	100	53.535	Cercocebus_atys
ENSSFOG00015001509	cmss1	80	61.472	ENSCLAG00000011241	CMSS1	97	61.304	Chinchilla_lanigera
ENSSFOG00015001509	cmss1	83	60.000	ENSCSAG00000006024	CMSS1	92	60.870	Chlorocebus_sabaeus
ENSSFOG00015001509	cmss1	100	42.373	ENSCHOG00000012098	CMSS1	100	41.724	Choloepus_hoffmanni
ENSSFOG00015001509	cmss1	79	40.000	ENSCING00000014848	-	100	40.000	Ciona_intestinalis
ENSSFOG00015001509	cmss1	100	54.795	ENSCANG00000031337	CMSS1	100	53.199	Colobus_angolensis_palliatus
ENSSFOG00015001509	cmss1	100	54.138	ENSCGRG00001014305	Cmss1	100	53.401	Cricetulus_griseus_chok1gshd
ENSSFOG00015001509	cmss1	82	60.084	ENSCGRG00000006722	Cmss1	88	61.304	Cricetulus_griseus_crigri
ENSSFOG00015001509	cmss1	100	60.544	ENSCSEG00000004958	cmss1	100	58.667	Cynoglossus_semilaevis
ENSSFOG00015001509	cmss1	100	63.356	ENSCVAG00000005039	cmss1	100	63.448	Cyprinodon_variegatus
ENSSFOG00015001509	cmss1	100	63.300	ENSDARG00000112579	cmss1	100	63.014	Danio_rerio
ENSSFOG00015001509	cmss1	81	61.702	ENSDNOG00000040418	CMSS1	82	62.174	Dasypus_novemcinctus
ENSSFOG00015001509	cmss1	100	55.517	ENSDORG00000010461	Cmss1	100	54.027	Dipodomys_ordii
ENSSFOG00015001509	cmss1	80	60.606	ENSEASG00005010966	CMSS1	99	60.000	Equus_asinus_asinus
ENSSFOG00015001509	cmss1	82	58.824	ENSECAG00000015662	CMSS1	99	60.000	Equus_caballus
ENSSFOG00015001509	cmss1	100	38.966	ENSEEUG00000007624	-	100	38.966	Erinaceus_europaeus
ENSSFOG00015001509	cmss1	100	59.740	ENSELUG00000019459	cmss1	100	62.171	Esox_lucius
ENSSFOG00015001509	cmss1	100	55.517	ENSFCAG00000044577	CMSS1	100	54.054	Felis_catus
ENSSFOG00015001509	cmss1	79	63.478	ENSFALG00000005816	CMSS1	95	63.478	Ficedula_albicollis
ENSSFOG00015001509	cmss1	80	61.472	ENSFDAG00000012577	CMSS1	99	60.870	Fukomys_damarensis
ENSSFOG00015001509	cmss1	80	70.690	ENSFHEG00000012008	cmss1	95	70.870	Fundulus_heteroclitus
ENSSFOG00015001509	cmss1	99	62.369	ENSGMOG00000016729	cmss1	100	62.369	Gadus_morhua
ENSSFOG00015001509	cmss1	97	56.786	ENSGALG00000015267	CMSS1	87	63.913	Gallus_gallus
ENSSFOG00015001509	cmss1	71	73.430	ENSGAFG00000021217	cmss1	77	72.906	Gambusia_affinis
ENSSFOG00015001509	cmss1	99	61.672	ENSGACG00000002798	cmss1	100	60.976	Gasterosteus_aculeatus
ENSSFOG00015001509	cmss1	97	55.282	ENSGAGG00000019861	CMSS1	93	58.893	Gopherus_agassizii
ENSSFOG00015001509	cmss1	83	60.000	ENSGGOG00000014125	CMSS1	87	60.435	Gorilla_gorilla
ENSSFOG00015001509	cmss1	100	62.162	ENSHBUG00000008431	cmss1	100	58.958	Haplochromis_burtoni
ENSSFOG00015001509	cmss1	80	61.039	ENSHGLG00000019481	CMSS1	92	60.870	Heterocephalus_glaber_female
ENSSFOG00015001509	cmss1	80	61.039	ENSHGLG00100010314	CMSS1	91	60.870	Heterocephalus_glaber_male
ENSSFOG00015001509	cmss1	100	59.396	ENSHCOG00000003222	cmss1	100	58.497	Hippocampus_comes
ENSSFOG00015001509	cmss1	100	61.301	ENSIPUG00000011591	cmss1	100	61.224	Ictalurus_punctatus
ENSSFOG00015001509	cmss1	100	54.828	ENSSTOG00000019366	CMSS1	100	52.921	Ictidomys_tridecemlineatus
ENSSFOG00015001509	cmss1	100	53.103	ENSJJAG00000014894	Cmss1	90	64.356	Jaculus_jaculus
ENSSFOG00015001509	cmss1	70	64.532	ENSKMAG00000002390	cmss1	82	64.039	Kryptolebias_marmoratus
ENSSFOG00015001509	cmss1	93	59.779	ENSLBEG00000006298	cmss1	83	71.569	Labrus_bergylta
ENSSFOG00015001509	cmss1	79	63.043	ENSLACG00000009293	CMSS1	99	63.043	Latimeria_chalumnae
ENSSFOG00015001509	cmss1	100	60.410	ENSLOCG00000009391	cmss1	100	59.386	Lepisosteus_oculatus
ENSSFOG00015001509	cmss1	80	61.905	ENSLAFG00000017509	CMSS1	99	60.000	Loxodonta_africana
ENSSFOG00015001509	cmss1	100	54.639	ENSMFAG00000045006	CMSS1	100	52.862	Macaca_fascicularis
ENSSFOG00015001509	cmss1	100	54.296	ENSMMUG00000002939	CMSS1	96	60.455	Macaca_mulatta
ENSSFOG00015001509	cmss1	100	54.639	ENSMNEG00000031315	CMSS1	100	52.862	Macaca_nemestrina
ENSSFOG00015001509	cmss1	100	54.639	ENSMLEG00000033660	CMSS1	100	52.862	Mandrillus_leucophaeus
ENSSFOG00015001509	cmss1	100	63.946	ENSMAMG00000017176	cmss1	100	64.286	Mastacembelus_armatus
ENSSFOG00015001509	cmss1	100	62.500	ENSMZEG00005021886	cmss1	100	62.799	Maylandia_zebra
ENSSFOG00015001509	cmss1	79	63.478	ENSMGAG00000014360	CMSS1	99	63.478	Meleagris_gallopavo
ENSSFOG00015001509	cmss1	100	39.041	ENSMAUG00000020609	Cmss1	100	38.225	Mesocricetus_auratus
ENSSFOG00015001509	cmss1	100	54.138	ENSMICG00000048977	CMSS1	100	53.535	Microcebus_murinus
ENSSFOG00015001509	cmss1	100	54.138	ENSMOCG00000021937	Cmss1	100	53.448	Microtus_ochrogaster
ENSSFOG00015001509	cmss1	70	71.429	ENSMMOG00000019794	cmss1	84	71.429	Mola_mola
ENSSFOG00015001509	cmss1	93	55.720	ENSMODG00000002275	CMSS1	85	60.870	Monodelphis_domestica
ENSSFOG00015001509	cmss1	100	65.986	ENSMALG00000004250	cmss1	100	65.753	Monopterus_albus
ENSSFOG00015001509	cmss1	100	54.795	MGP_CAROLIEiJ_G0020824	Cmss1	100	54.452	Mus_caroli
ENSSFOG00015001509	cmss1	100	54.795	ENSMUSG00000022748	Cmss1	100	54.452	Mus_musculus
ENSSFOG00015001509	cmss1	100	54.452	MGP_PahariEiJ_G0016524	Cmss1	100	53.448	Mus_pahari
ENSSFOG00015001509	cmss1	100	54.452	MGP_SPRETEiJ_G0021724	Cmss1	100	54.110	Mus_spretus
ENSSFOG00015001509	cmss1	82	61.181	ENSMPUG00000011324	CMSS1	87	62.009	Mustela_putorius_furo
ENSSFOG00015001509	cmss1	83	60.331	ENSMLUG00000001131	CMSS1	87	61.638	Myotis_lucifugus
ENSSFOG00015001509	cmss1	100	52.721	ENSNGAG00000020316	Cmss1	100	53.559	Nannospalax_galili
ENSSFOG00015001509	cmss1	100	62.838	ENSNBRG00000003095	cmss1	100	63.140	Neolamprologus_brichardi
ENSSFOG00015001509	cmss1	100	55.782	ENSNLEG00000034172	CMSS1	100	53.535	Nomascus_leucogenys
ENSSFOG00015001509	cmss1	80	53.247	ENSMEUG00000014505	CMSS1	99	53.913	Notamacropus_eugenii
ENSSFOG00015001509	cmss1	100	54.138	ENSOPRG00000002986	CMSS1	100	55.102	Ochotona_princeps
ENSSFOG00015001509	cmss1	100	47.931	ENSODEG00000001853	-	100	47.603	Octodon_degus
ENSSFOG00015001509	cmss1	100	54.795	ENSODEG00000005226	-	100	54.392	Octodon_degus
ENSSFOG00015001509	cmss1	100	51.379	ENSODEG00000003558	-	100	51.034	Octodon_degus
ENSSFOG00015001509	cmss1	100	45.172	ENSODEG00000009446	-	100	43.051	Octodon_degus
ENSSFOG00015001509	cmss1	70	73.399	ENSONIG00000006678	cmss1	78	73.399	Oreochromis_niloticus
ENSSFOG00015001509	cmss1	81	63.136	ENSOANG00000007529	CMSS1	99	62.609	Ornithorhynchus_anatinus
ENSSFOG00015001509	cmss1	95	54.182	ENSOCUG00000025366	CMSS1	82	60.870	Oryctolagus_cuniculus
ENSSFOG00015001509	cmss1	100	63.051	ENSORLG00000020340	cmss1	100	62.626	Oryzias_latipes
ENSSFOG00015001509	cmss1	72	63.462	ENSORLG00020012235	cmss1	86	63.547	Oryzias_latipes_hni
ENSSFOG00015001509	cmss1	92	57.455	ENSORLG00015015551	cmss1	76	65.025	Oryzias_latipes_hsok
ENSSFOG00015001509	cmss1	100	62.799	ENSOMEG00000012555	cmss1	100	62.329	Oryzias_melastigma
ENSSFOG00015001509	cmss1	80	59.740	ENSOGAG00000002045	CMSS1	99	60.435	Otolemur_garnettii
ENSSFOG00015001509	cmss1	87	57.540	ENSOARG00000017899	CMSS1	78	58.974	Ovis_aries
ENSSFOG00015001509	cmss1	95	55.072	ENSPPAG00000038515	CMSS1	83	60.435	Pan_paniscus
ENSSFOG00015001509	cmss1	100	55.172	ENSPPRG00000016767	CMSS1	100	54.422	Panthera_pardus
ENSSFOG00015001509	cmss1	100	55.172	ENSPTIG00000018274	CMSS1	100	53.716	Panthera_tigris_altaica
ENSSFOG00015001509	cmss1	100	55.102	ENSPTRG00000015157	CMSS1	100	53.691	Pan_troglodytes
ENSSFOG00015001509	cmss1	84	58.025	ENSPANG00000019980	CMSS1	90	60.870	Papio_anubis
ENSSFOG00015001509	cmss1	99	70.000	ENSPKIG00000012609	cmss1	94	74.118	Paramormyrops_kingsleyae
ENSSFOG00015001509	cmss1	79	63.913	ENSPSIG00000003849	CMSS1	99	63.913	Pelodiscus_sinensis
ENSSFOG00015001509	cmss1	70	76.471	ENSPMGG00000010286	cmss1	88	76.471	Periophthalmus_magnuspinnatus
ENSSFOG00015001509	cmss1	100	56.207	ENSPEMG00000016384	Cmss1	100	54.915	Peromyscus_maniculatus_bairdii
ENSSFOG00015001509	cmss1	70	56.373	ENSPMAG00000001146	cmss1	99	56.650	Petromyzon_marinus
ENSSFOG00015001509	cmss1	93	55.762	ENSPCIG00000015656	CMSS1	86	62.174	Phascolarctos_cinereus
ENSSFOG00015001509	cmss1	100	61.017	ENSPFOG00000016849	cmss1	100	62.414	Poecilia_formosa
ENSSFOG00015001509	cmss1	100	60.678	ENSPLAG00000008323	cmss1	100	62.069	Poecilia_latipinna
ENSSFOG00015001509	cmss1	100	59.596	ENSPMEG00000021020	cmss1	100	62.069	Poecilia_mexicana
ENSSFOG00015001509	cmss1	85	66.798	ENSPREG00000007618	cmss1	78	68.696	Poecilia_reticulata
ENSSFOG00015001509	cmss1	100	55.172	ENSPPYG00000013606	CMSS1	100	52.862	Pongo_abelii
ENSSFOG00015001509	cmss1	100	53.793	ENSPCOG00000020035	CMSS1	100	52.881	Propithecus_coquereli
ENSSFOG00015001509	cmss1	100	47.797	ENSPVAG00000017031	CMSS1	100	46.959	Pteropus_vampyrus
ENSSFOG00015001509	cmss1	91	61.852	ENSPNYG00000013428	cmss1	97	63.670	Pundamilia_nyererei
ENSSFOG00015001509	cmss1	100	60.544	ENSPNAG00000007912	cmss1	100	59.524	Pygocentrus_nattereri
ENSSFOG00015001509	cmss1	81	61.441	ENSRNOG00000027888	Cmss1	88	60.870	Rattus_norvegicus
ENSSFOG00015001509	cmss1	100	54.296	ENSRBIG00000037931	CMSS1	100	53.199	Rhinopithecus_bieti
ENSSFOG00015001509	cmss1	100	54.296	ENSRROG00000042910	CMSS1	100	53.199	Rhinopithecus_roxellana
ENSSFOG00015001509	cmss1	82	60.504	ENSSBOG00000030980	CMSS1	86	61.304	Saimiri_boliviensis_boliviensis
ENSSFOG00015001509	cmss1	81	59.574	ENSSHAG00000009321	CMSS1	89	60.435	Sarcophilus_harrisii
ENSSFOG00015001509	cmss1	100	62.925	ENSSMAG00000001653	cmss1	100	61.644	Scophthalmus_maximus
ENSSFOG00015001509	cmss1	100	65.424	ENSSDUG00000007719	cmss1	100	63.545	Seriola_dumerili
ENSSFOG00015001509	cmss1	71	76.329	ENSSLDG00000012300	cmss1	76	70.109	Seriola_lalandi_dorsalis
ENSSFOG00015001509	cmss1	100	43.793	ENSSARG00000003584	CMSS1	100	42.712	Sorex_araneus
ENSSFOG00015001509	cmss1	79	61.739	ENSSPUG00000003865	CMSS1	100	61.739	Sphenodon_punctatus
ENSSFOG00015001509	cmss1	71	77.778	ENSSPAG00000019182	cmss1	63	77.833	Stegastes_partitus
ENSSFOG00015001509	cmss1	100	54.483	ENSSSCG00000011970	CMSS1	100	52.174	Sus_scrofa
ENSSFOG00015001509	cmss1	79	62.174	ENSTGUG00000013635	CMSS1	99	62.174	Taeniopygia_guttata
ENSSFOG00015001509	cmss1	100	61.856	ENSTRUG00000015265	cmss1	100	60.269	Takifugu_rubripes
ENSSFOG00015001509	cmss1	95	57.762	ENSTNIG00000002880	cmss1	89	61.134	Tetraodon_nigroviridis
ENSSFOG00015001509	cmss1	100	37.241	ENSTBEG00000016722	CMSS1	100	37.241	Tupaia_belangeri
ENSSFOG00015001509	cmss1	100	53.448	ENSTTRG00000001562	CMSS1	100	51.839	Tursiops_truncatus
ENSSFOG00015001509	cmss1	81	61.864	ENSUAMG00000024209	CMSS1	94	61.739	Ursus_americanus
ENSSFOG00015001509	cmss1	81	61.441	ENSUMAG00000001983	CMSS1	87	61.304	Ursus_maritimus
ENSSFOG00015001509	cmss1	100	42.414	ENSVPAG00000000263	CMSS1	57	63.750	Vicugna_pacos
ENSSFOG00015001509	cmss1	82	59.833	ENSVVUG00000021647	-	92	60.435	Vulpes_vulpes
ENSSFOG00015001509	cmss1	70	63.366	ENSVVUG00000007776	-	85	60.538	Vulpes_vulpes
ENSSFOG00015001509	cmss1	100	54.266	ENSXETG00000011858	cmss1	100	52.069	Xenopus_tropicalis
ENSSFOG00015001509	cmss1	72	73.077	ENSXCOG00000018724	cmss1	70	72.906	Xiphophorus_couchianus
ENSSFOG00015001509	cmss1	72	73.077	ENSXMAG00000011243	cmss1	76	72.906	Xiphophorus_maculatus