EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015001688 (Gene tree)
Gene ID: 108920919
Gene Symbol: CPSF6 (1 of many)
Alias: wu:fa22f12|zgc:85819
Full Name: cleavage and polyadenylation specificity factor subunit 6
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 10812 bases
Position: chrKV411299.1:5819738-5830549
Accession: 108920919
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015002561	RRM_1	PF00076.22	2.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015002606	CPSF6 (1 of many)-201	4143	XM_018730013	ENSSFOP00015002561	632 (aa)	XP_018585529	-

Gene Model

Click here to download ENSSFOG00015001688's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015001688's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015001688	CPSF6	54	41.899	ENSSFOG00015010288	cpsf7	73	42.938
ENSSFOG00015001688	CPSF6	82	86.756	ENSSFOG00015015803	CPSF6	94	85.797

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015001688	CPSF6	59	51.562	ENSG00000149532	CPSF7	100	52.000	Homo_sapiens
ENSSFOG00015001688	CPSF6	82	82.184	ENSG00000111605	CPSF6	95	79.732	Homo_sapiens
ENSSFOG00015001688	CPSF6	82	79.008	ENSAMEG00000011781	CPSF6	94	77.143	Ailuropoda_melanoleuca
ENSSFOG00015001688	CPSF6	50	40.000	ENSAOCG00000012357	CPSF7	64	41.279	Amphiprion_ocellaris
ENSSFOG00015001688	CPSF6	50	40.000	ENSAPEG00000015375	CPSF7	63	41.765	Amphiprion_percula
ENSSFOG00015001688	CPSF6	79	81.746	ENSANAG00000019240	CPSF6	93	79.208	Aotus_nancymaae
ENSSFOG00015001688	CPSF6	54	93.413	ENSAMXG00000016745	CPSF6	75	92.308	Astyanax_mexicanus
ENSSFOG00015001688	CPSF6	82	82.184	ENSBTAG00000007323	CPSF6	95	79.732	Bos_taurus
ENSSFOG00015001688	CPSF6	82	82.184	ENSCJAG00000001798	CPSF6	95	79.732	Callithrix_jacchus
ENSSFOG00015001688	CPSF6	59	51.562	ENSCJAG00000019282	CPSF7	84	54.335	Callithrix_jacchus
ENSSFOG00015001688	CPSF6	79	81.710	ENSCAFG00000000424	CPSF6	91	79.167	Canis_familiaris
ENSSFOG00015001688	CPSF6	82	82.184	ENSCAFG00020016950	CPSF6	95	79.732	Canis_lupus_dingo
ENSSFOG00015001688	CPSF6	82	82.184	ENSCHIG00000010792	CPSF6	95	79.732	Capra_hircus
ENSSFOG00015001688	CPSF6	79	81.673	ENSTSYG00000008591	CPSF6	91	78.728	Carlito_syrichta
ENSSFOG00015001688	CPSF6	50	58.451	ENSCPOG00000009980	CPSF7	66	50.838	Cavia_porcellus
ENSSFOG00015001688	CPSF6	82	81.992	ENSCPOG00000015201	CPSF6	95	79.541	Cavia_porcellus
ENSSFOG00015001688	CPSF6	82	82.184	ENSCCAG00000028149	CPSF6	95	79.732	Cebus_capucinus
ENSSFOG00015001688	CPSF6	82	82.184	ENSCATG00000039288	CPSF6	95	79.732	Cercocebus_atys
ENSSFOG00015001688	CPSF6	79	81.474	ENSCLAG00000010149	CPSF6	94	78.529	Chinchilla_lanigera
ENSSFOG00015001688	CPSF6	82	81.992	ENSCPBG00000013322	CPSF6	95	79.350	Chrysemys_picta_bellii
ENSSFOG00015001688	CPSF6	79	81.673	ENSCANG00000037294	CPSF6	94	78.728	Colobus_angolensis_palliatus
ENSSFOG00015001688	CPSF6	82	81.453	ENSCGRG00001018082	Cpsf6	95	79.580	Cricetulus_griseus_chok1gshd
ENSSFOG00015001688	CPSF6	81	79.344	ENSCGRG00000016909	Cpsf6	94	78.571	Cricetulus_griseus_crigri
ENSSFOG00015001688	CPSF6	71	33.937	ENSCVAG00000007392	CPSF7	81	38.830	Cyprinodon_variegatus
ENSSFOG00015001688	CPSF6	82	81.262	ENSDNOG00000015292	CPSF6	95	79.389	Dasypus_novemcinctus
ENSSFOG00015001688	CPSF6	56	52.083	ENSDNOG00000018517	CPSF7	84	54.913	Dasypus_novemcinctus
ENSSFOG00015001688	CPSF6	79	80.915	ENSDORG00000002950	Cpsf6	92	78.968	Dipodomys_ordii
ENSSFOG00015001688	CPSF6	56	50.279	ENSETEG00000003765	CPSF7	69	50.279	Echinops_telfairi
ENSSFOG00015001688	CPSF6	82	82.184	ENSEASG00005008066	CPSF6	95	79.732	Equus_asinus_asinus
ENSSFOG00015001688	CPSF6	82	82.184	ENSECAG00000015988	CPSF6	95	79.732	Equus_caballus
ENSSFOG00015001688	CPSF6	60	52.083	ENSFCAG00000013677	CPSF7	86	54.913	Felis_catus
ENSSFOG00015001688	CPSF6	82	82.184	ENSFCAG00000002855	CPSF6	95	79.732	Felis_catus
ENSSFOG00015001688	CPSF6	79	80.556	ENSFALG00000010157	CPSF6	94	78.416	Ficedula_albicollis
ENSSFOG00015001688	CPSF6	56	52.688	ENSFALG00000011927	CPSF7	77	55.682	Ficedula_albicollis
ENSSFOG00015001688	CPSF6	81	79.423	ENSFDAG00000002281	CPSF6	94	76.967	Fukomys_damarensis
ENSSFOG00015001688	CPSF6	82	86.898	ENSGACG00000019685	cpsf6	52	89.437	Gasterosteus_aculeatus
ENSSFOG00015001688	CPSF6	82	81.992	ENSGAGG00000010228	CPSF6	95	79.350	Gopherus_agassizii
ENSSFOG00015001688	CPSF6	82	81.453	ENSGGOG00000008211	CPSF6	95	79.580	Gorilla_gorilla
ENSSFOG00015001688	CPSF6	59	53.125	ENSHGLG00000019090	-	67	50.838	Heterocephalus_glaber_female
ENSSFOG00015001688	CPSF6	82	81.992	ENSHGLG00000000792	CPSF6	95	79.541	Heterocephalus_glaber_female
ENSSFOG00015001688	CPSF6	78	53.125	ENSHGLG00100013933	-	74	55.682	Heterocephalus_glaber_male
ENSSFOG00015001688	CPSF6	82	79.271	ENSHGLG00100013861	CPSF6	94	78.529	Heterocephalus_glaber_male
ENSSFOG00015001688	CPSF6	79	81.673	ENSSTOG00000014133	CPSF6	94	78.926	Ictidomys_tridecemlineatus
ENSSFOG00015001688	CPSF6	79	80.754	ENSJJAG00000014647	Cpsf6	94	78.416	Jaculus_jaculus
ENSSFOG00015001688	CPSF6	50	39.865	ENSLBEG00000000947	CPSF7	67	40.000	Labrus_bergylta
ENSSFOG00015001688	CPSF6	82	81.262	ENSLACG00000008625	CPSF6	95	78.435	Latimeria_chalumnae
ENSSFOG00015001688	CPSF6	65	44.937	ENSLACG00000005542	CPSF7	71	44.937	Latimeria_chalumnae
ENSSFOG00015001688	CPSF6	58	92.771	ENSLOCG00000016190	cpsf6	66	94.083	Lepisosteus_oculatus
ENSSFOG00015001688	CPSF6	82	82.184	ENSLAFG00000030413	CPSF6	95	79.732	Loxodonta_africana
ENSSFOG00015001688	CPSF6	82	82.184	ENSMFAG00000045318	CPSF6	95	79.732	Macaca_fascicularis
ENSSFOG00015001688	CPSF6	82	81.453	ENSMMUG00000002921	CPSF6	95	79.580	Macaca_mulatta
ENSSFOG00015001688	CPSF6	82	82.184	ENSMNEG00000036311	CPSF6	95	79.732	Macaca_nemestrina
ENSSFOG00015001688	CPSF6	79	81.673	ENSMLEG00000003957	CPSF6	94	78.728	Mandrillus_leucophaeus
ENSSFOG00015001688	CPSF6	83	43.525	ENSMGAG00000004876	CPSF7	63	60.588	Meleagris_gallopavo
ENSSFOG00015001688	CPSF6	82	82.184	ENSMAUG00000013240	Cpsf6	95	79.732	Mesocricetus_auratus
ENSSFOG00015001688	CPSF6	82	81.453	ENSMICG00000007385	-	95	79.580	Microcebus_murinus
ENSSFOG00015001688	CPSF6	82	81.453	ENSMOCG00000013982	Cpsf6	95	79.580	Microtus_ochrogaster
ENSSFOG00015001688	CPSF6	56	51.269	ENSMODG00000020364	CPSF7	73	56.111	Monodelphis_domestica
ENSSFOG00015001688	CPSF6	82	82.375	ENSMODG00000007123	CPSF6	95	79.924	Monodelphis_domestica
ENSSFOG00015001688	CPSF6	65	92.746	ENSMALG00000014908	cpsf6	77	94.083	Monopterus_albus
ENSSFOG00015001688	CPSF6	82	82.184	MGP_CAROLIEiJ_G0015834	Cpsf6	95	79.732	Mus_caroli
ENSSFOG00015001688	CPSF6	82	82.184	ENSMUSG00000055531	Cpsf6	95	79.580	Mus_musculus
ENSSFOG00015001688	CPSF6	74	79.577	MGP_PahariEiJ_G0031253	Cpsf6	56	79.225	Mus_pahari
ENSSFOG00015001688	CPSF6	82	82.184	MGP_SPRETEiJ_G0016657	Cpsf6	95	79.580	Mus_spretus
ENSSFOG00015001688	CPSF6	59	89.855	ENSMLUG00000028728	-	88	85.517	Myotis_lucifugus
ENSSFOG00015001688	CPSF6	82	81.453	ENSNGAG00000015901	Cpsf6	95	79.580	Nannospalax_galili
ENSSFOG00015001688	CPSF6	82	82.184	ENSNLEG00000003798	CPSF6	95	79.732	Nomascus_leucogenys
ENSSFOG00015001688	CPSF6	56	53.125	ENSMEUG00000002261	CPSF7	72	56.818	Notamacropus_eugenii
ENSSFOG00015001688	CPSF6	59	67.550	ENSODEG00000007109	-	75	65.839	Octodon_degus
ENSSFOG00015001688	CPSF6	56	50.279	ENSODEG00000002610	CPSF7	66	50.279	Octodon_degus
ENSSFOG00015001688	CPSF6	82	80.725	ENSODEG00000018399	-	95	78.817	Octodon_degus
ENSSFOG00015001688	CPSF6	57	51.351	ENSOCUG00000024726	CPSF7	66	55.114	Oryctolagus_cuniculus
ENSSFOG00015001688	CPSF6	82	85.824	ENSORLG00000013893	cpsf6	95	85.086	Oryzias_latipes
ENSSFOG00015001688	CPSF6	62	34.711	ENSORLG00000006495	CPSF7	60	48.696	Oryzias_latipes
ENSSFOG00015001688	CPSF6	62	34.711	ENSORLG00020012657	CPSF7	60	48.696	Oryzias_latipes_hni
ENSSFOG00015001688	CPSF6	82	85.824	ENSORLG00020016593	cpsf6	95	85.086	Oryzias_latipes_hni
ENSSFOG00015001688	CPSF6	62	34.711	ENSORLG00015011091	CPSF7	60	48.696	Oryzias_latipes_hsok
ENSSFOG00015001688	CPSF6	82	85.824	ENSORLG00015015558	cpsf6	95	85.086	Oryzias_latipes_hsok
ENSSFOG00015001688	CPSF6	82	84.733	ENSOMEG00000009425	cpsf6	95	82.443	Oryzias_melastigma
ENSSFOG00015001688	CPSF6	60	36.364	ENSOMEG00000000539	CPSF7	72	41.040	Oryzias_melastigma
ENSSFOG00015001688	CPSF6	56	52.083	ENSOARG00000012937	CPSF7	65	55.114	Ovis_aries
ENSSFOG00015001688	CPSF6	60	52.083	ENSPPRG00000008538	CPSF7	72	55.682	Panthera_pardus
ENSSFOG00015001688	CPSF6	82	82.184	ENSPPRG00000021620	CPSF6	95	79.732	Panthera_pardus
ENSSFOG00015001688	CPSF6	74	81.277	ENSPTIG00000004079	CPSF6	94	78.132	Panthera_tigris_altaica
ENSSFOG00015001688	CPSF6	82	81.453	ENSPTRG00000005205	CPSF6	95	79.580	Pan_troglodytes
ENSSFOG00015001688	CPSF6	82	82.184	ENSPANG00000011641	CPSF6	95	79.732	Papio_anubis
ENSSFOG00015001688	CPSF6	53	46.328	ENSPKIG00000018054	CPSF7	65	46.914	Paramormyrops_kingsleyae
ENSSFOG00015001688	CPSF6	79	80.716	ENSPEMG00000007973	Cpsf6	94	78.373	Peromyscus_maniculatus_bairdii
ENSSFOG00015001688	CPSF6	82	82.375	ENSPCIG00000019063	CPSF6	95	79.924	Phascolarctos_cinereus
ENSSFOG00015001688	CPSF6	56	51.269	ENSPCIG00000002551	CPSF7	84	54.348	Phascolarctos_cinereus
ENSSFOG00015001688	CPSF6	53	93.103	ENSPLAG00000005715	cpsf6	95	86.372	Poecilia_latipinna
ENSSFOG00015001688	CPSF6	82	82.184	ENSPPYG00000004756	CPSF6	95	79.732	Pongo_abelii
ENSSFOG00015001688	CPSF6	82	82.375	ENSRNOG00000005927	Cpsf6	95	79.924	Rattus_norvegicus
ENSSFOG00015001688	CPSF6	59	52.083	ENSRNOG00000020668	Cpsf7	71	51.397	Rattus_norvegicus
ENSSFOG00015001688	CPSF6	59	51.562	ENSRBIG00000031429	CPSF7	86	54.335	Rhinopithecus_bieti
ENSSFOG00015001688	CPSF6	82	81.453	ENSRBIG00000042827	CPSF6	95	79.580	Rhinopithecus_bieti
ENSSFOG00015001688	CPSF6	82	82.184	ENSRROG00000042758	CPSF6	95	79.732	Rhinopithecus_roxellana
ENSSFOG00015001688	CPSF6	74	81.277	ENSSBOG00000010652	CPSF6	94	78.132	Saimiri_boliviensis_boliviensis
ENSSFOG00015001688	CPSF6	54	54.167	ENSSHAG00000011964	CPSF7	69	57.955	Sarcophilus_harrisii
ENSSFOG00015001688	CPSF6	79	78.346	ENSSHAG00000006635	CPSF6	94	75.835	Sarcophilus_harrisii
ENSSFOG00015001688	CPSF6	74	87.747	ENSSARG00000006743	CPSF6	80	86.614	Sorex_araneus
ENSSFOG00015001688	CPSF6	56	55.208	ENSSPUG00000019344	CPSF7	73	59.091	Sphenodon_punctatus
ENSSFOG00015001688	CPSF6	82	82.184	ENSSSCG00000038031	CPSF6	95	79.732	Sus_scrofa
ENSSFOG00015001688	CPSF6	56	52.083	ENSSSCG00000013083	CPSF7	84	54.913	Sus_scrofa
ENSSFOG00015001688	CPSF6	54	50.556	ENSTGUG00000006513	CPSF7	75	56.915	Taeniopygia_guttata
ENSSFOG00015001688	CPSF6	74	81.277	ENSUAMG00000023492	CPSF6	94	78.132	Ursus_americanus
ENSSFOG00015001688	CPSF6	74	81.277	ENSUMAG00000020779	CPSF6	94	78.132	Ursus_maritimus
ENSSFOG00015001688	CPSF6	58	52.083	ENSVVUG00000004939	CPSF7	84	54.913	Vulpes_vulpes
ENSSFOG00015001688	CPSF6	84	42.364	ENSXETG00000006715	cpsf7	54	49.718	Xenopus_tropicalis