EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015001948 (Gene tree)
Gene ID: 108935940
Gene Symbol: apex1
Alias: hm:zehn1532|wu:fc13d11|zap1|zgc:66204
Full Name: apurinic/apyrimidinic endodeoxyribonuclease 1
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 5813 bases
Position: chrKV411110.1:825953-831765
Accession: 108935940
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015002982	Exo_endo_phos	PF03372.23	1.1e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015003028	-	1633	XM_018754936	ENSSFOP00015002982	310 (aa)	XP_018610452	A0A0N8JYW7

Gene Model

Click here to download ENSSFOG00015001948's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015001948's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015001948	apex1	100	61.950	ENSG00000100823	APEX1	87	66.426	Homo_sapiens
ENSSFOG00015001948	apex1	90	83.571	ENSAPOG00000017002	apex1	99	77.597	Acanthochromis_polyacanthus
ENSSFOG00015001948	apex1	100	61.321	ENSAMEG00000005418	APEX1	87	65.942	Ailuropoda_melanoleuca
ENSSFOG00015001948	apex1	89	85.921	ENSACIG00000010653	apex1	93	85.870	Amphilophus_citrinellus
ENSSFOG00015001948	apex1	99	80.195	ENSAOCG00000009649	apex1	99	80.195	Amphiprion_ocellaris
ENSSFOG00015001948	apex1	99	80.519	ENSAPEG00000021453	apex1	99	80.519	Amphiprion_percula
ENSSFOG00015001948	apex1	99	83.172	ENSATEG00000002883	apex1	97	80.583	Anabas_testudineus
ENSSFOG00015001948	apex1	100	67.593	ENSACAG00000008099	APEX1	100	68.239	Anolis_carolinensis
ENSSFOG00015001948	apex1	81	30.667	ENSACAG00000011201	APEX2	59	30.667	Anolis_carolinensis
ENSSFOG00015001948	apex1	100	62.893	ENSANAG00000030117	APEX1	100	63.522	Aotus_nancymaae
ENSSFOG00015001948	apex1	89	86.545	ENSACLG00000018441	apex1	99	82.848	Astatotilapia_calliptera
ENSSFOG00015001948	apex1	100	83.654	ENSAMXG00000034699	apex1	100	83.654	Astyanax_mexicanus
ENSSFOG00015001948	apex1	100	61.006	ENSBTAG00000002745	APEX1	87	65.580	Bos_taurus
ENSSFOG00015001948	apex1	91	42.807	WBGene00001372	exo-3	92	43.985	Caenorhabditis_elegans
ENSSFOG00015001948	apex1	100	62.579	ENSCJAG00000009726	APEX1	100	63.208	Callithrix_jacchus
ENSSFOG00015001948	apex1	100	63.208	ENSCAFG00000032033	APEX1	100	63.208	Canis_familiaris
ENSSFOG00015001948	apex1	100	63.208	ENSCAFG00020014377	-	100	63.208	Canis_lupus_dingo
ENSSFOG00015001948	apex1	53	56.977	ENSCAFG00020023002	-	96	56.977	Canis_lupus_dingo
ENSSFOG00015001948	apex1	88	53.091	ENSCHIG00000014537	-	85	54.104	Capra_hircus
ENSSFOG00015001948	apex1	100	61.006	ENSCHIG00000007298	-	87	65.580	Capra_hircus
ENSSFOG00015001948	apex1	100	61.635	ENSTSYG00000034813	APEX1	100	61.950	Carlito_syrichta
ENSSFOG00015001948	apex1	87	60.364	ENSCAPG00000016235	APEX1	97	60.364	Cavia_aperea
ENSSFOG00015001948	apex1	100	62.579	ENSCPOG00000030909	APEX1	100	62.579	Cavia_porcellus
ENSSFOG00015001948	apex1	100	62.579	ENSCCAG00000033056	-	100	63.208	Cebus_capucinus
ENSSFOG00015001948	apex1	100	54.232	ENSCCAG00000031931	-	94	53.055	Cebus_capucinus
ENSSFOG00015001948	apex1	100	62.264	ENSCATG00000015580	APEX1	87	66.065	Cercocebus_atys
ENSSFOG00015001948	apex1	100	61.950	ENSCLAG00000001002	APEX1	100	62.264	Chinchilla_lanigera
ENSSFOG00015001948	apex1	100	62.579	ENSCSAG00000016685	-	87	66.426	Chlorocebus_sabaeus
ENSSFOG00015001948	apex1	100	62.579	ENSCSAG00000016670	-	87	66.426	Chlorocebus_sabaeus
ENSSFOG00015001948	apex1	100	70.126	ENSCPBG00000009567	APEX1	100	69.182	Chrysemys_picta_bellii
ENSSFOG00015001948	apex1	100	53.548	ENSCING00000008137	-	85	59.176	Ciona_intestinalis
ENSSFOG00015001948	apex1	96	48.013	ENSCSAVG00000007144	-	100	51.938	Ciona_savignyi
ENSSFOG00015001948	apex1	100	62.579	ENSCANG00000030726	APEX1	87	66.426	Colobus_angolensis_palliatus
ENSSFOG00015001948	apex1	100	62.145	ENSCGRG00001017046	Apex1	100	62.145	Cricetulus_griseus_chok1gshd
ENSSFOG00015001948	apex1	100	62.145	ENSCGRG00000008984	Apex1	100	62.145	Cricetulus_griseus_crigri
ENSSFOG00015001948	apex1	99	78.641	ENSCSEG00000017499	apex1	99	78.641	Cynoglossus_semilaevis
ENSSFOG00015001948	apex1	99	81.553	ENSCVAG00000022075	apex1	99	81.553	Cyprinodon_variegatus
ENSSFOG00015001948	apex1	100	83.280	ENSDARG00000045843	apex1	100	80.707	Danio_rerio
ENSSFOG00015001948	apex1	100	59.119	ENSDNOG00000042234	APEX1	95	59.748	Dasypus_novemcinctus
ENSSFOG00015001948	apex1	100	61.950	ENSDORG00000001616	Apex1	87	66.065	Dipodomys_ordii
ENSSFOG00015001948	apex1	100	61.635	ENSETEG00000004855	-	100	62.264	Echinops_telfairi
ENSSFOG00015001948	apex1	76	58.824	ENSEBUG00000000622	-	92	58.824	Eptatretus_burgeri
ENSSFOG00015001948	apex1	100	62.579	ENSEASG00005017489	APEX1	74	62.579	Equus_asinus_asinus
ENSSFOG00015001948	apex1	100	62.579	ENSECAG00000022325	APEX1	82	62.579	Equus_caballus
ENSSFOG00015001948	apex1	88	65.091	ENSEEUG00000012569	APEX1	93	65.918	Erinaceus_europaeus
ENSSFOG00015001948	apex1	100	84.295	ENSELUG00000021706	apex1	100	84.295	Esox_lucius
ENSSFOG00015001948	apex1	100	62.579	ENSFCAG00000030869	APEX1	100	62.893	Felis_catus
ENSSFOG00015001948	apex1	100	62.893	ENSFDAG00000006120	APEX1	100	63.208	Fukomys_damarensis
ENSSFOG00015001948	apex1	99	82.201	ENSFHEG00000009031	apex1	83	82.201	Fundulus_heteroclitus
ENSSFOG00015001948	apex1	99	75.241	ENSGMOG00000007943	apex1	99	74.277	Gadus_morhua
ENSSFOG00015001948	apex1	99	82.848	ENSGAFG00000005311	apex1	99	80.645	Gambusia_affinis
ENSSFOG00015001948	apex1	99	81.290	ENSGACG00000019497	apex1	99	84.211	Gasterosteus_aculeatus
ENSSFOG00015001948	apex1	100	69.497	ENSGAGG00000014999	APEX1	100	69.182	Gopherus_agassizii
ENSSFOG00015001948	apex1	100	61.635	ENSGGOG00000002128	APEX1	87	66.065	Gorilla_gorilla
ENSSFOG00015001948	apex1	99	82.468	ENSHBUG00000005894	apex1	99	82.468	Haplochromis_burtoni
ENSSFOG00015001948	apex1	100	62.579	ENSHGLG00000002848	APEX1	100	62.893	Heterocephalus_glaber_female
ENSSFOG00015001948	apex1	100	62.579	ENSHGLG00100017878	APEX1	100	62.893	Heterocephalus_glaber_male
ENSSFOG00015001948	apex1	99	80.645	ENSHCOG00000009961	apex1	99	80.645	Hippocampus_comes
ENSSFOG00015001948	apex1	100	82.315	ENSIPUG00000005799	apex1	100	82.315	Ictalurus_punctatus
ENSSFOG00015001948	apex1	100	61.635	ENSSTOG00000010096	APEX1	100	62.579	Ictidomys_tridecemlineatus
ENSSFOG00015001948	apex1	92	59.298	ENSJJAG00000020465	-	89	59.928	Jaculus_jaculus
ENSSFOG00015001948	apex1	100	55.031	ENSJJAG00000003660	-	87	58.484	Jaculus_jaculus
ENSSFOG00015001948	apex1	100	61.635	ENSJJAG00000012067	-	87	66.426	Jaculus_jaculus
ENSSFOG00015001948	apex1	99	80.906	ENSKMAG00000021171	apex1	99	80.906	Kryptolebias_marmoratus
ENSSFOG00015001948	apex1	99	80.645	ENSLBEG00000010248	apex1	99	78.065	Labrus_bergylta
ENSSFOG00015001948	apex1	100	75.796	ENSLACG00000008617	APEX1	100	73.567	Latimeria_chalumnae
ENSSFOG00015001948	apex1	100	80.635	ENSLOCG00000015516	apex1	99	79.048	Lepisosteus_oculatus
ENSSFOG00015001948	apex1	100	61.950	ENSLAFG00000021872	APEX1	87	66.787	Loxodonta_africana
ENSSFOG00015001948	apex1	100	61.950	ENSMFAG00000002565	APEX1	87	66.065	Macaca_fascicularis
ENSSFOG00015001948	apex1	100	61.950	ENSMMUG00000048039	APEX1	87	66.065	Macaca_mulatta
ENSSFOG00015001948	apex1	100	62.696	ENSMNEG00000036944	APEX1	87	66.065	Macaca_nemestrina
ENSSFOG00015001948	apex1	100	62.264	ENSMLEG00000042125	APEX1	87	66.065	Mandrillus_leucophaeus
ENSSFOG00015001948	apex1	99	81.935	ENSMAMG00000023526	apex1	99	79.355	Mastacembelus_armatus
ENSSFOG00015001948	apex1	89	86.545	ENSMZEG00005014187	apex1	99	82.848	Maylandia_zebra
ENSSFOG00015001948	apex1	100	62.461	ENSMAUG00000013994	Apex1	100	62.025	Mesocricetus_auratus
ENSSFOG00015001948	apex1	100	61.635	ENSMICG00000043554	APEX1	100	61.950	Microcebus_murinus
ENSSFOG00015001948	apex1	100	62.461	ENSMOCG00000013721	Apex1	100	62.461	Microtus_ochrogaster
ENSSFOG00015001948	apex1	99	81.553	ENSMMOG00000010031	apex1	97	81.553	Mola_mola
ENSSFOG00015001948	apex1	90	66.667	ENSMODG00000007125	APEX1	86	67.273	Monodelphis_domestica
ENSSFOG00015001948	apex1	90	80.000	ENSMALG00000011699	apex1	74	79.710	Monopterus_albus
ENSSFOG00015001948	apex1	99	63.608	MGP_CAROLIEiJ_G0019209	Apex1	99	63.608	Mus_caroli
ENSSFOG00015001948	apex1	100	63.407	ENSMUSG00000035960	Apex1	100	63.407	Mus_musculus
ENSSFOG00015001948	apex1	100	63.407	MGP_PahariEiJ_G0030232	Apex1	100	63.407	Mus_pahari
ENSSFOG00015001948	apex1	100	63.407	MGP_SPRETEiJ_G0020101	Apex1	100	63.407	Mus_spretus
ENSSFOG00015001948	apex1	100	61.562	ENSMLUG00000028957	APEX1	86	65.942	Myotis_lucifugus
ENSSFOG00015001948	apex1	99	46.417	ENSNGAG00000021748	-	85	49.104	Nannospalax_galili
ENSSFOG00015001948	apex1	100	61.321	ENSNGAG00000002725	-	100	61.950	Nannospalax_galili
ENSSFOG00015001948	apex1	89	86.545	ENSNBRG00000005334	apex1	91	82.848	Neolamprologus_brichardi
ENSSFOG00015001948	apex1	100	61.981	ENSNLEG00000010839	APEX1	88	66.426	Nomascus_leucogenys
ENSSFOG00015001948	apex1	100	62.739	ENSMEUG00000014519	APEX1	100	62.739	Notamacropus_eugenii
ENSSFOG00015001948	apex1	100	61.514	ENSOPRG00000014029	APEX1	100	61.830	Ochotona_princeps
ENSSFOG00015001948	apex1	100	49.691	ENSODEG00000006583	-	86	52.297	Octodon_degus
ENSSFOG00015001948	apex1	100	62.893	ENSODEG00000001703	-	100	63.208	Octodon_degus
ENSSFOG00015001948	apex1	97	48.377	ENSODEG00000004777	-	83	53.968	Octodon_degus
ENSSFOG00015001948	apex1	89	86.643	ENSONIG00000012089	apex1	99	82.848	Oreochromis_niloticus
ENSSFOG00015001948	apex1	88	68.000	ENSOANG00000008836	APEX1	68	68.000	Ornithorhynchus_anatinus
ENSSFOG00015001948	apex1	100	61.950	ENSOCUG00000005022	APEX1	100	62.893	Oryctolagus_cuniculus
ENSSFOG00015001948	apex1	99	82.637	ENSORLG00000012378	apex1	99	80.064	Oryzias_latipes
ENSSFOG00015001948	apex1	99	82.637	ENSORLG00020021371	apex1	99	80.064	Oryzias_latipes_hni
ENSSFOG00015001948	apex1	99	82.637	ENSORLG00015020089	apex1	99	80.064	Oryzias_latipes_hsok
ENSSFOG00015001948	apex1	99	83.601	ENSOMEG00000018876	apex1	99	81.029	Oryzias_melastigma
ENSSFOG00015001948	apex1	92	58.246	ENSOGAG00000029355	-	88	58.845	Otolemur_garnettii
ENSSFOG00015001948	apex1	100	63.522	ENSOGAG00000013335	-	100	63.208	Otolemur_garnettii
ENSSFOG00015001948	apex1	97	58.442	ENSOARG00000001876	-	86	62.782	Ovis_aries
ENSSFOG00015001948	apex1	100	61.321	ENSOARG00000019740	-	87	65.942	Ovis_aries
ENSSFOG00015001948	apex1	95	55.333	ENSOARG00000014424	-	87	56.410	Ovis_aries
ENSSFOG00015001948	apex1	100	61.981	ENSPPAG00000038760	APEX1	88	66.426	Pan_paniscus
ENSSFOG00015001948	apex1	100	62.264	ENSPPRG00000011794	APEX1	100	62.893	Panthera_pardus
ENSSFOG00015001948	apex1	100	62.579	ENSPTIG00000014829	APEX1	100	62.893	Panthera_tigris_altaica
ENSSFOG00015001948	apex1	100	61.981	ENSPTRG00000006093	APEX1	88	66.426	Pan_troglodytes
ENSSFOG00015001948	apex1	100	62.264	ENSPANG00000022757	APEX1	87	66.065	Papio_anubis
ENSSFOG00015001948	apex1	95	89.796	ENSPKIG00000003504	apex1	100	87.580	Paramormyrops_kingsleyae
ENSSFOG00015001948	apex1	78	79.352	ENSPMGG00000016596	apex1	74	79.352	Periophthalmus_magnuspinnatus
ENSSFOG00015001948	apex1	100	63.091	ENSPEMG00000019097	Apex1	100	63.091	Peromyscus_maniculatus_bairdii
ENSSFOG00015001948	apex1	94	72.542	ENSPMAG00000007275	-	94	74.007	Petromyzon_marinus
ENSSFOG00015001948	apex1	91	65.724	ENSPCIG00000023274	APEX1	86	67.153	Phascolarctos_cinereus
ENSSFOG00015001948	apex1	99	82.581	ENSPFOG00000004178	apex1	99	80.323	Poecilia_formosa
ENSSFOG00015001948	apex1	99	82.581	ENSPLAG00000012779	apex1	99	80.323	Poecilia_latipinna
ENSSFOG00015001948	apex1	99	82.581	ENSPMEG00000019623	apex1	99	80.323	Poecilia_mexicana
ENSSFOG00015001948	apex1	99	81.613	ENSPREG00000014298	apex1	99	79.355	Poecilia_reticulata
ENSSFOG00015001948	apex1	100	61.635	ENSPPYG00000005565	APEX1	87	66.065	Pongo_abelii
ENSSFOG00015001948	apex1	100	60.377	ENSPCAG00000010376	APEX1	100	60.692	Procavia_capensis
ENSSFOG00015001948	apex1	100	61.950	ENSPCOG00000021564	APEX1	100	62.264	Propithecus_coquereli
ENSSFOG00015001948	apex1	100	61.875	ENSPVAG00000010736	APEX1	87	66.426	Pteropus_vampyrus
ENSSFOG00015001948	apex1	89	86.909	ENSPNYG00000023940	apex1	99	83.172	Pundamilia_nyererei
ENSSFOG00015001948	apex1	93	82.986	ENSPNAG00000020897	apex1	96	83.217	Pygocentrus_nattereri
ENSSFOG00015001948	apex1	81	30.671	ENSPNAG00000011666	apex2	52	30.128	Pygocentrus_nattereri
ENSSFOG00015001948	apex1	100	62.776	ENSRNOG00000009663	Apex1	100	62.776	Rattus_norvegicus
ENSSFOG00015001948	apex1	100	62.579	ENSRBIG00000038325	APEX1	86	66.426	Rhinopithecus_bieti
ENSSFOG00015001948	apex1	100	62.579	ENSSBOG00000018921	-	100	63.208	Saimiri_boliviensis_boliviensis
ENSSFOG00015001948	apex1	100	55.305	ENSSBOG00000031372	-	100	55.305	Saimiri_boliviensis_boliviensis
ENSSFOG00015001948	apex1	100	61.111	ENSSHAG00000013524	APEX1	85	66.426	Sarcophilus_harrisii
ENSSFOG00015001948	apex1	99	80.635	ENSSMAG00000013348	apex1	99	79.048	Scophthalmus_maximus
ENSSFOG00015001948	apex1	99	81.935	ENSSDUG00000016377	apex1	99	79.355	Seriola_dumerili
ENSSFOG00015001948	apex1	99	81.290	ENSSLDG00000023005	apex1	99	78.710	Seriola_lalandi_dorsalis
ENSSFOG00015001948	apex1	99	67.314	ENSSPUG00000000531	APEX1	99	67.320	Sphenodon_punctatus
ENSSFOG00015001948	apex1	99	79.288	ENSSPAG00000000458	apex1	99	79.288	Stegastes_partitus
ENSSFOG00015001948	apex1	100	61.321	ENSSSCG00000040060	-	100	61.950	Sus_scrofa
ENSSFOG00015001948	apex1	96	37.171	ENSSSCG00000039705	-	89	38.628	Sus_scrofa
ENSSFOG00015001948	apex1	76	57.872	ENSTGUG00000014378	APEX1	100	57.872	Taeniopygia_guttata
ENSSFOG00015001948	apex1	89	85.560	ENSTRUG00000004268	apex1	84	85.507	Takifugu_rubripes
ENSSFOG00015001948	apex1	99	81.494	ENSTNIG00000005778	apex1	99	79.545	Tetraodon_nigroviridis
ENSSFOG00015001948	apex1	100	59.119	ENSTBEG00000006405	APEX1	100	59.748	Tupaia_belangeri
ENSSFOG00015001948	apex1	76	64.681	ENSTTRG00000007860	APEX1	100	64.681	Tursiops_truncatus
ENSSFOG00015001948	apex1	100	61.950	ENSUAMG00000010457	APEX1	100	61.950	Ursus_americanus
ENSSFOG00015001948	apex1	100	61.950	ENSUMAG00000009178	APEX1	100	61.950	Ursus_maritimus
ENSSFOG00015001948	apex1	76	60.426	ENSVPAG00000005083	APEX1	100	60.426	Vicugna_pacos
ENSSFOG00015001948	apex1	100	63.208	ENSVVUG00000009010	APEX1	100	63.208	Vulpes_vulpes
ENSSFOG00015001948	apex1	100	67.405	ENSXETG00000024773	apex1	100	67.405	Xenopus_tropicalis
ENSSFOG00015001948	apex1	99	81.877	ENSXCOG00000015233	apex1	99	81.290	Xiphophorus_couchianus
ENSSFOG00015001948	apex1	99	81.877	ENSXMAG00000006195	apex1	99	81.290	Xiphophorus_maculatus