EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSFOG00015002108 (Gene tree)
Gene ID
108929323
Gene Symbol
cpsf3
Alias
si:dkey-81b15.1|wu:fc32f10|zgc:101655
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Scleropages_formosus
Status
putative
Strand
Minus strand
Length
11572 bases
Position
chrKV410896.1:3362293-3373864
Accession
108929323
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSFOP00015003318CPSF73-100_CPF11718.81.6e-5011
ENSSFOP00015003334CPSF73-100_CPF11718.81.9e-5011
ENSSFOP00015003353CPSF73-100_CPF11718.81.6e-4811
ENSSFOP00015003353Beta-CaspPF10996.87.5e-3411
ENSSFOP00015003318Beta-CaspPF10996.87.6e-3411
ENSSFOP00015003334Beta-CaspPF10996.88.9e-3411
ENSSFOP00015003334Lactamase_BPF00753.271.6e-1811
ENSSFOP00015003318Lactamase_BPF00753.271.5e-1311
ENSSFOP00015003353Lactamase_BPF00753.273.9e-0811
ENSSFOP00015003318RMMBLPF07521.128.3e-2211
ENSSFOP00015003353RMMBLPF07521.128.5e-2211
ENSSFOP00015003334RMMBLPF07521.121e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSFOT00015003408-1908-ENSSFOP00015003353635 (aa)--
ENSSFOT00015003389-6297XM_018743744ENSSFOP00015003334690 (aa)XP_018599260A0A1W4ZET6
ENSSFOT00015003373-6386-ENSSFOP00015003318634 (aa)--
Gene Model
Click here to download ENSSFOG00015002108's gene model file
Pathways
Pathway IDPathway NameSource
sfm03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015002108's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSFOG00015002108cpsf38335.254ENSSFOG00015020610cpsf3l9635.254
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSFOG00015002108cpsf39989.574ENSG00000119203CPSF3100100.000Homo_sapiens
ENSSFOG00015002108cpsf310087.971ENSAPOG00000022087cpsf310087.971Acanthochromis_polyacanthus
ENSSFOG00015002108cpsf37497.446ENSAPOG00000012241CPSF39197.446Acanthochromis_polyacanthus
ENSSFOG00015002108cpsf39989.721ENSAMEG00000008493CPSF39989.721Ailuropoda_melanoleuca
ENSSFOG00015002108cpsf310085.377ENSACIG00000009846cpsf310085.377Amphilophus_citrinellus
ENSSFOG00015002108cpsf310089.168ENSACIG00000023663CPSF310089.168Amphilophus_citrinellus
ENSSFOG00015002108cpsf310091.014ENSAOCG00000010077CPSF310091.014Amphiprion_ocellaris
ENSSFOG00015002108cpsf310088.406ENSAOCG00000022056cpsf310089.650Amphiprion_ocellaris
ENSSFOG00015002108cpsf310091.014ENSAPEG00000021167CPSF310091.014Amphiprion_percula
ENSSFOG00015002108cpsf310088.406ENSAPEG00000019526cpsf39989.802Amphiprion_percula
ENSSFOG00015002108cpsf39988.808ENSATEG00000003959cpsf39988.808Anabas_testudineus
ENSSFOG00015002108cpsf310086.087ENSATEG00000014525CPSF310086.087Anabas_testudineus
ENSSFOG00015002108cpsf39989.100ENSAPLG00000006941CPSF39889.254Anas_platyrhynchos
ENSSFOG00015002108cpsf39987.224ENSACAG00000001759CPSF39987.224Anolis_carolinensis
ENSSFOG00015002108cpsf39984.435ENSANAG00000031254CPSF39985.135Aotus_nancymaae
ENSSFOG00015002108cpsf310089.482ENSACLG00000018846CPSF310089.482Astatotilapia_calliptera
ENSSFOG00015002108cpsf310087.539ENSACLG00000014484cpsf39988.138Astatotilapia_calliptera
ENSSFOG00015002108cpsf310091.325ENSAMXG00000004786cpsf310091.304Astyanax_mexicanus
ENSSFOG00015002108cpsf39989.721ENSBTAG00000019735CPSF39989.721Bos_taurus
ENSSFOG00015002108cpsf39157.797WBGene00013460cpsf-38958.202Caenorhabditis_elegans
ENSSFOG00015002108cpsf39989.427ENSCJAG00000006276CPSF39989.427Callithrix_jacchus
ENSSFOG00015002108cpsf39989.721ENSCAFG00000003375CPSF39589.721Canis_familiaris
ENSSFOG00015002108cpsf39090.877ENSCAFG00020026799CPSF39991.100Canis_lupus_dingo
ENSSFOG00015002108cpsf39989.721ENSCHIG00000013973CPSF39989.721Capra_hircus
ENSSFOG00015002108cpsf39989.574ENSTSYG00000002967CPSF39989.574Carlito_syrichta
ENSSFOG00015002108cpsf39988.784ENSCAPG00000013851CPSF39989.323Cavia_aperea
ENSSFOG00015002108cpsf39989.134ENSCPOG00000011299CPSF39989.134Cavia_porcellus
ENSSFOG00015002108cpsf39989.427ENSCCAG00000036730CPSF39989.640Cebus_capucinus
ENSSFOG00015002108cpsf39987.812ENSCATG00000014770CPSF39993.276Cercocebus_atys
ENSSFOG00015002108cpsf39989.280ENSCLAG00000002727CPSF39989.280Chinchilla_lanigera
ENSSFOG00015002108cpsf39981.645ENSCSAG00000007125CPSF39981.645Chlorocebus_sabaeus
ENSSFOG00015002108cpsf385100.000ENSCHOG00000000180CPSF38564.437Choloepus_hoffmanni
ENSSFOG00015002108cpsf39989.260ENSCPBG00000014074CPSF39989.260Chrysemys_picta_bellii
ENSSFOG00015002108cpsf39967.606ENSCING00000007214-9767.836Ciona_intestinalis
ENSSFOG00015002108cpsf39979.562ENSCANG00000034435CPSF39979.562Colobus_angolensis_palliatus
ENSSFOG00015002108cpsf39989.134ENSCGRG00001013134Cpsf39989.134Cricetulus_griseus_chok1gshd
ENSSFOG00015002108cpsf39989.134ENSCGRG00000018319Cpsf39989.134Cricetulus_griseus_crigri
ENSSFOG00015002108cpsf310089.764ENSCSEG00000002021CPSF310089.954Cynoglossus_semilaevis
ENSSFOG00015002108cpsf310090.580ENSCVAG00000015067CPSF310090.580Cyprinodon_variegatus
ENSSFOG00015002108cpsf35074.214ENSCVAG00000022039-9474.214Cyprinodon_variegatus
ENSSFOG00015002108cpsf310090.435ENSDARG00000027649cpsf310090.435Danio_rerio
ENSSFOG00015002108cpsf39988.270ENSDNOG00000008940CPSF39588.270Dasypus_novemcinctus
ENSSFOG00015002108cpsf39589.701ENSDORG00000014263Cpsf39990.000Dipodomys_ordii
ENSSFOG00015002108cpsf310065.625FBgn0261065Cpsf739966.282Drosophila_melanogaster
ENSSFOG00015002108cpsf39579.734ENSETEG00000003893CPSF39977.538Echinops_telfairi
ENSSFOG00015002108cpsf39976.587ENSEBUG00000009018cpsf39977.010Eptatretus_burgeri
ENSSFOG00015002108cpsf39989.721ENSEASG00005003970CPSF39989.721Equus_asinus_asinus
ENSSFOG00015002108cpsf39989.721ENSECAG00000019911CPSF39692.929Equus_caballus
ENSSFOG00015002108cpsf39974.596ENSEEUG00000015422CPSF39974.596Erinaceus_europaeus
ENSSFOG00015002108cpsf39992.743ENSELUG00000013775cpsf39992.743Esox_lucius
ENSSFOG00015002108cpsf39989.721ENSFCAG00000007852CPSF39989.721Felis_catus
ENSSFOG00015002108cpsf39989.258ENSFALG00000006572CPSF39989.457Ficedula_albicollis
ENSSFOG00015002108cpsf39988.563ENSFDAG00000006317CPSF39988.563Fukomys_damarensis
ENSSFOG00015002108cpsf310087.391ENSFHEG00000014774cpsf310087.391Fundulus_heteroclitus
ENSSFOG00015002108cpsf36472.087ENSFHEG00000012186CPSF310072.087Fundulus_heteroclitus
ENSSFOG00015002108cpsf310088.328ENSGMOG00000003157cpsf310088.261Gadus_morhua
ENSSFOG00015002108cpsf39989.067ENSGALG00000016424CPSF39989.067Gallus_gallus
ENSSFOG00015002108cpsf310085.669ENSGAFG00000019449cpsf310085.669Gambusia_affinis
ENSSFOG00015002108cpsf310091.014ENSGAFG00000008016CPSF310091.014Gambusia_affinis
ENSSFOG00015002108cpsf37485.439ENSGAGG00000025583CPSF39385.439Gopherus_agassizii
ENSSFOG00015002108cpsf39989.258ENSGGOG00000001757CPSF39198.073Gorilla_gorilla
ENSSFOG00015002108cpsf310087.826ENSHBUG00000001188cpsf310087.826Haplochromis_burtoni
ENSSFOG00015002108cpsf36484.406ENSHBUG00000014332CPSF310084.406Haplochromis_burtoni
ENSSFOG00015002108cpsf39988.987ENSHGLG00000000666CPSF39988.987Heterocephalus_glaber_female
ENSSFOG00015002108cpsf39988.987ENSHGLG00100007765CPSF39988.987Heterocephalus_glaber_male
ENSSFOG00015002108cpsf39989.873ENSHCOG00000015957CPSF39989.826Hippocampus_comes
ENSSFOG00015002108cpsf39987.209ENSHCOG00000007251cpsf39987.209Hippocampus_comes
ENSSFOG00015002108cpsf310090.435ENSIPUG00000023488cpsf310090.435Ictalurus_punctatus
ENSSFOG00015002108cpsf39989.280ENSSTOG00000004476CPSF39989.280Ictidomys_tridecemlineatus
ENSSFOG00015002108cpsf39988.546ENSJJAG00000023415Cpsf39988.546Jaculus_jaculus
ENSSFOG00015002108cpsf310090.580ENSKMAG00000007317CPSF310090.580Kryptolebias_marmoratus
ENSSFOG00015002108cpsf310087.826ENSKMAG00000002806cpsf310087.826Kryptolebias_marmoratus
ENSSFOG00015002108cpsf39591.681ENSLBEG00000013492CPSF39991.629Labrus_bergylta
ENSSFOG00015002108cpsf35984.140ENSLBEG00000015018-9984.367Labrus_bergylta
ENSSFOG00015002108cpsf39981.977ENSLBEG00000020569cpsf39681.977Labrus_bergylta
ENSSFOG00015002108cpsf310082.200ENSLACG00000008308CPSF310082.200Latimeria_chalumnae
ENSSFOG00015002108cpsf310092.308ENSLOCG00000016823cpsf310092.208Lepisosteus_oculatus
ENSSFOG00015002108cpsf39989.432ENSLAFG00000009467CPSF39988.807Loxodonta_africana
ENSSFOG00015002108cpsf39989.427ENSMFAG00000001339CPSF39595.228Macaca_fascicularis
ENSSFOG00015002108cpsf39989.100ENSMMUG00000018038CPSF39989.302Macaca_mulatta
ENSSFOG00015002108cpsf39098.039ENSMNEG00000039447CPSF39997.222Macaca_nemestrina
ENSSFOG00015002108cpsf39989.574ENSMLEG00000026825CPSF39397.863Mandrillus_leucophaeus
ENSSFOG00015002108cpsf310088.406ENSMAMG00000003076cpsf310088.406Mastacembelus_armatus
ENSSFOG00015002108cpsf310089.168ENSMAMG00000008835CPSF310089.168Mastacembelus_armatus
ENSSFOG00015002108cpsf310091.014ENSMZEG00005006258CPSF310091.014Maylandia_zebra
ENSSFOG00015002108cpsf310087.826ENSMZEG00005014358cpsf310087.826Maylandia_zebra
ENSSFOG00015002108cpsf39988.468ENSMGAG00000013995CPSF39989.023Meleagris_gallopavo
ENSSFOG00015002108cpsf35981.283ENSMAUG00000000166Cpsf39981.283Mesocricetus_auratus
ENSSFOG00015002108cpsf39984.559ENSMICG00000002363CPSF39984.559Microcebus_murinus
ENSSFOG00015002108cpsf39985.316ENSMOCG00000020067Cpsf39985.316Microtus_ochrogaster
ENSSFOG00015002108cpsf37980.142ENSMMOG00000011923CPSF38580.142Mola_mola
ENSSFOG00015002108cpsf39984.044ENSMMOG00000018212CPSF39884.341Mola_mola
ENSSFOG00015002108cpsf39988.517ENSMODG00000014703CPSF39988.517Monodelphis_domestica
ENSSFOG00015002108cpsf39986.854ENSMALG00000011474CPSF39986.854Monopterus_albus
ENSSFOG00015002108cpsf310088.696ENSMALG00000016416cpsf310088.696Monopterus_albus
ENSSFOG00015002108cpsf39989.134MGP_CAROLIEiJ_G0017640Cpsf39989.134Mus_caroli
ENSSFOG00015002108cpsf39989.134ENSMUSG00000054309Cpsf39698.305Mus_musculus
ENSSFOG00015002108cpsf39988.987MGP_PahariEiJ_G0029397Cpsf39988.987Mus_pahari
ENSSFOG00015002108cpsf39989.134MGP_SPRETEiJ_G0018481Cpsf39989.134Mus_spretus
ENSSFOG00015002108cpsf39989.883ENSMPUG00000013213CPSF39989.883Mustela_putorius_furo
ENSSFOG00015002108cpsf39989.296ENSMLUG00000010636CPSF39989.296Myotis_lucifugus
ENSSFOG00015002108cpsf39988.987ENSNGAG00000019836Cpsf39988.987Nannospalax_galili
ENSSFOG00015002108cpsf310089.482ENSNBRG00000010525CPSF310089.482Neolamprologus_brichardi
ENSSFOG00015002108cpsf310087.536ENSNBRG00000004770cpsf310087.536Neolamprologus_brichardi
ENSSFOG00015002108cpsf39989.427ENSNLEG00000013359CPSF39198.073Nomascus_leucogenys
ENSSFOG00015002108cpsf39958.610ENSMEUG00000013117-9958.003Notamacropus_eugenii
ENSSFOG00015002108cpsf39980.938ENSOPRG00000008902CPSF39980.938Ochotona_princeps
ENSSFOG00015002108cpsf39989.427ENSODEG00000003129CPSF39989.427Octodon_degus
ENSSFOG00015002108cpsf310088.116ENSONIG00000018812cpsf310088.116Oreochromis_niloticus
ENSSFOG00015002108cpsf38888.078ENSOANG00000008577CPSF39988.078Ornithorhynchus_anatinus
ENSSFOG00015002108cpsf39989.427ENSOCUG00000003728CPSF39989.427Oryctolagus_cuniculus
ENSSFOG00015002108cpsf310085.942ENSORLG00000018854cpsf310085.942Oryzias_latipes
ENSSFOG00015002108cpsf310085.797ENSORLG00020013331cpsf310085.797Oryzias_latipes_hni
ENSSFOG00015002108cpsf310085.942ENSORLG00015011017cpsf310085.942Oryzias_latipes_hsok
ENSSFOG00015002108cpsf310086.087ENSOMEG00000010647cpsf39686.087Oryzias_melastigma
ENSSFOG00015002108cpsf39979.442ENSOGAG00000001680CPSF39979.442Otolemur_garnettii
ENSSFOG00015002108cpsf39989.721ENSOARG00000015073CPSF39989.721Ovis_aries
ENSSFOG00015002108cpsf39989.574ENSPPAG00000042457CPSF39198.073Pan_paniscus
ENSSFOG00015002108cpsf39989.427ENSPPRG00000016790CPSF39989.427Panthera_pardus
ENSSFOG00015002108cpsf39989.100ENSPTIG00000003920CPSF39989.823Panthera_tigris_altaica
ENSSFOG00015002108cpsf39989.574ENSPTRG00000011638CPSF39198.073Pan_troglodytes
ENSSFOG00015002108cpsf39989.427ENSPANG00000016798CPSF39595.228Papio_anubis
ENSSFOG00015002108cpsf310097.792ENSPKIG00000023646cpsf310097.833Paramormyrops_kingsleyae
ENSSFOG00015002108cpsf39988.468ENSPSIG00000016144CPSF39987.959Pelodiscus_sinensis
ENSSFOG00015002108cpsf36482.222ENSPMGG00000015311CPSF310082.222Periophthalmus_magnuspinnatus
ENSSFOG00015002108cpsf39982.148ENSPMGG00000006141-9491.529Periophthalmus_magnuspinnatus
ENSSFOG00015002108cpsf39989.134ENSPEMG00000017668Cpsf39989.134Peromyscus_maniculatus_bairdii
ENSSFOG00015002108cpsf37989.908ENSPMAG00000004841cpsf310089.908Petromyzon_marinus
ENSSFOG00015002108cpsf39988.942ENSPCIG00000009823CPSF39889.724Phascolarctos_cinereus
ENSSFOG00015002108cpsf310090.536ENSPFOG00000010418-10090.435Poecilia_formosa
ENSSFOG00015002108cpsf310086.957ENSPFOG00000015922cpsf310086.957Poecilia_formosa
ENSSFOG00015002108cpsf36485.432ENSPLAG00000021300-10085.432Poecilia_latipinna
ENSSFOG00015002108cpsf310086.957ENSPLAG00000000882cpsf310086.957Poecilia_latipinna
ENSSFOG00015002108cpsf310086.957ENSPMEG00000018309cpsf310086.957Poecilia_mexicana
ENSSFOG00015002108cpsf310084.058ENSPREG00000004482CPSF310084.058Poecilia_reticulata
ENSSFOG00015002108cpsf310085.827ENSPREG00000014875cpsf310085.827Poecilia_reticulata
ENSSFOG00015002108cpsf39985.316ENSPPYG00000012666CPSF39985.316Pongo_abelii
ENSSFOG00015002108cpsf38272.727ENSPCAG00000015042CPSF39066.353Procavia_capensis
ENSSFOG00015002108cpsf38789.680ENSPCOG00000023016CPSF39789.680Propithecus_coquereli
ENSSFOG00015002108cpsf39989.589ENSPVAG00000005324CPSF39989.589Pteropus_vampyrus
ENSSFOG00015002108cpsf38794.727ENSPNYG00000021047CPSF39294.727Pundamilia_nyererei
ENSSFOG00015002108cpsf310087.826ENSPNYG00000004405cpsf310087.826Pundamilia_nyererei
ENSSFOG00015002108cpsf310091.159ENSPNAG00000023060cpsf310091.159Pygocentrus_nattereri
ENSSFOG00015002108cpsf310088.504ENSRNOG00000052418Cpsf39988.873Rattus_norvegicus
ENSSFOG00015002108cpsf39985.940ENSRBIG00000041615CPSF39986.047Rhinopithecus_bieti
ENSSFOG00015002108cpsf39989.574ENSRROG00000033792CPSF39989.574Rhinopithecus_roxellana
ENSSFOG00015002108cpsf39141.405YLR277CYSH19042.188Saccharomyces_cerevisiae
ENSSFOG00015002108cpsf39985.714ENSSBOG00000027263CPSF39786.398Saimiri_boliviensis_boliviensis
ENSSFOG00015002108cpsf39989.427ENSSHAG00000007024CPSF39989.427Sarcophilus_harrisii
ENSSFOG00015002108cpsf39590.259ENSSMAG00000020534CPSF39790.259Scophthalmus_maximus
ENSSFOG00015002108cpsf310090.870ENSSDUG00000018498CPSF310090.870Seriola_dumerili
ENSSFOG00015002108cpsf310088.696ENSSDUG00000002828cpsf39788.696Seriola_dumerili
ENSSFOG00015002108cpsf310088.841ENSSLDG00000008469cpsf39789.666Seriola_lalandi_dorsalis
ENSSFOG00015002108cpsf310090.870ENSSLDG00000005234CPSF310090.870Seriola_lalandi_dorsalis
ENSSFOG00015002108cpsf38984.428ENSSARG00000005186CPSF38984.428Sorex_araneus
ENSSFOG00015002108cpsf39985.557ENSSPUG00000015525CPSF39786.248Sphenodon_punctatus
ENSSFOG00015002108cpsf310090.870ENSSPAG00000002906CPSF310090.870Stegastes_partitus
ENSSFOG00015002108cpsf310088.116ENSSPAG00000018579cpsf310088.116Stegastes_partitus
ENSSFOG00015002108cpsf39989.721ENSSSCG00000020799CPSF39989.721Sus_scrofa
ENSSFOG00015002108cpsf39989.736ENSTGUG00000013016CPSF39989.736Taeniopygia_guttata
ENSSFOG00015002108cpsf36476.601ENSTRUG00000013905CPSF310076.601Takifugu_rubripes
ENSSFOG00015002108cpsf39987.228ENSTRUG00000007030cpsf39887.228Takifugu_rubripes
ENSSFOG00015002108cpsf38491.484ENSTBEG00000002707CPSF38491.484Tupaia_belangeri
ENSSFOG00015002108cpsf38674.818ENSTTRG00000000861CPSF38774.818Tursiops_truncatus
ENSSFOG00015002108cpsf39689.638ENSUAMG00000007535CPSF39489.939Ursus_americanus
ENSSFOG00015002108cpsf39989.415ENSUMAG00000003676CPSF39989.612Ursus_maritimus
ENSSFOG00015002108cpsf39588.040ENSVPAG00000008041CPSF310088.644Vicugna_pacos
ENSSFOG00015002108cpsf39989.721ENSVVUG00000002194CPSF39989.721Vulpes_vulpes
ENSSFOG00015002108cpsf39987.246ENSXETG00000008263cpsf39987.246Xenopus_tropicalis
ENSSFOG00015002108cpsf35984.409ENSXCOG00000000957-8784.409Xiphophorus_couchianus
ENSSFOG00015002108cpsf310086.667ENSXCOG00000019695cpsf310086.667Xiphophorus_couchianus
ENSSFOG00015002108cpsf310086.812ENSXMAG00000009784cpsf310086.812Xiphophorus_maculatus
ENSSFOG00015002108cpsf310090.725ENSXMAG00000027291CPSF310090.725Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us