EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015002117 (Gene tree)
Gene ID: 108923973
Gene Symbol: cpsf2
Alias: zgc:92484
Full Name: cleavage and polyadenylation specific factor 2
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 11276 bases
Position: chrKV410831.1:2809313-2820588
Accession: 108923973
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015003303	Beta-Casp	PF10996.8	4.3e-20	1	1
ENSSFOP00015003303	Lactamase_B	PF00753.27	2.9e-05	1	1
ENSSFOP00015003303	RMMBL	PF07521.12	3.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015003358	-	6722	XM_018735049	ENSSFOP00015003303	787 (aa)	XP_018590565	A0A0P7U144

Gene Model

Click here to download ENSSFOG00015002117's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015002117's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015002117	cpsf2	100	87.675	ENSG00000165934	CPSF2	100	88.750	Homo_sapiens
ENSSFOG00015002117	cpsf2	100	91.888	ENSAPOG00000001242	cpsf2	100	91.762	Acanthochromis_polyacanthus
ENSSFOG00015002117	cpsf2	100	91.899	ENSACIG00000009331	cpsf2	100	91.772	Amphilophus_citrinellus
ENSSFOG00015002117	cpsf2	100	91.255	ENSAOCG00000014095	cpsf2	100	91.128	Amphiprion_ocellaris
ENSSFOG00015002117	cpsf2	100	91.255	ENSAPEG00000009158	cpsf2	100	91.128	Amphiprion_percula
ENSSFOG00015002117	cpsf2	96	91.316	ENSATEG00000017644	cpsf2	100	89.482	Anabas_testudineus
ENSSFOG00015002117	cpsf2	100	86.692	ENSAPLG00000006330	CPSF2	100	86.582	Anas_platyrhynchos
ENSSFOG00015002117	cpsf2	100	86.912	ENSACAG00000009245	CPSF2	100	86.912	Anolis_carolinensis
ENSSFOG00015002117	cpsf2	100	87.421	ENSANAG00000022915	CPSF2	100	87.421	Aotus_nancymaae
ENSSFOG00015002117	cpsf2	100	91.105	ENSAMXG00000018696	cpsf2	100	91.105	Astyanax_mexicanus
ENSSFOG00015002117	cpsf2	100	87.166	ENSBTAG00000010227	CPSF2	100	87.166	Bos_taurus
ENSSFOG00015002117	cpsf2	100	43.494	WBGene00017313	cpsf-2	100	42.857	Caenorhabditis_elegans
ENSSFOG00015002117	cpsf2	100	87.421	ENSCJAG00000018069	CPSF2	100	87.421	Callithrix_jacchus
ENSSFOG00015002117	cpsf2	100	87.294	ENSCAFG00000010909	CPSF2	100	87.294	Canis_familiaris
ENSSFOG00015002117	cpsf2	100	87.294	ENSCAFG00020020670	CPSF2	100	87.294	Canis_lupus_dingo
ENSSFOG00015002117	cpsf2	100	87.166	ENSCHIG00000023848	CPSF2	100	87.166	Capra_hircus
ENSSFOG00015002117	cpsf2	100	87.294	ENSTSYG00000009036	CPSF2	100	87.294	Carlito_syrichta
ENSSFOG00015002117	cpsf2	100	87.294	ENSCPOG00000010899	CPSF2	100	87.294	Cavia_porcellus
ENSSFOG00015002117	cpsf2	100	87.421	ENSCCAG00000028088	CPSF2	100	87.421	Cebus_capucinus
ENSSFOG00015002117	cpsf2	100	87.421	ENSCATG00000030132	CPSF2	100	87.421	Cercocebus_atys
ENSSFOG00015002117	cpsf2	100	87.294	ENSCLAG00000012404	CPSF2	100	87.294	Chinchilla_lanigera
ENSSFOG00015002117	cpsf2	100	87.421	ENSCSAG00000011300	CPSF2	100	87.421	Chlorocebus_sabaeus
ENSSFOG00015002117	cpsf2	100	81.321	ENSCHOG00000012904	CPSF2	100	81.321	Choloepus_hoffmanni
ENSSFOG00015002117	cpsf2	100	87.548	ENSCPBG00000008766	CPSF2	97	87.548	Chrysemys_picta_bellii
ENSSFOG00015002117	cpsf2	100	54.342	ENSCING00000007881	-	100	54.208	Ciona_intestinalis
ENSSFOG00015002117	cpsf2	94	87.534	ENSCANG00000041651	CPSF2	100	87.517	Colobus_angolensis_palliatus
ENSSFOG00015002117	cpsf2	100	86.785	ENSCGRG00001006901	Cpsf2	100	86.785	Cricetulus_griseus_chok1gshd
ENSSFOG00015002117	cpsf2	100	86.785	ENSCGRG00000012416	Cpsf2	100	86.785	Cricetulus_griseus_crigri
ENSSFOG00015002117	cpsf2	100	90.621	ENSCSEG00000004116	cpsf2	100	90.621	Cynoglossus_semilaevis
ENSSFOG00015002117	cpsf2	100	90.621	ENSCVAG00000000095	cpsf2	100	90.621	Cyprinodon_variegatus
ENSSFOG00015002117	cpsf2	100	89.747	ENSDARG00000028971	cpsf2	100	89.241	Danio_rerio
ENSSFOG00015002117	cpsf2	100	87.421	ENSDNOG00000042757	CPSF2	100	87.421	Dasypus_novemcinctus
ENSSFOG00015002117	cpsf2	100	87.294	ENSDORG00000013709	Cpsf2	100	87.294	Dipodomys_ordii
ENSSFOG00015002117	cpsf2	100	54.332	FBgn0027873	Cpsf100	100	54.094	Drosophila_melanogaster
ENSSFOG00015002117	cpsf2	100	79.061	ENSETEG00000012123	CPSF2	100	79.061	Echinops_telfairi
ENSSFOG00015002117	cpsf2	52	77.751	ENSEBUG00000012098	cpsf2	93	77.751	Eptatretus_burgeri
ENSSFOG00015002117	cpsf2	89	92.150	ENSEASG00005021193	CPSF2	100	92.150	Equus_asinus_asinus
ENSSFOG00015002117	cpsf2	100	87.166	ENSECAG00000023935	CPSF2	100	87.166	Equus_caballus
ENSSFOG00015002117	cpsf2	100	90.339	ENSELUG00000008442	cpsf2	100	90.339	Esox_lucius
ENSSFOG00015002117	cpsf2	100	87.166	ENSFCAG00000007886	CPSF2	100	87.166	Felis_catus
ENSSFOG00015002117	cpsf2	100	87.166	ENSFALG00000002412	CPSF2	100	86.929	Ficedula_albicollis
ENSSFOG00015002117	cpsf2	100	87.166	ENSFDAG00000006327	CPSF2	100	87.166	Fukomys_damarensis
ENSSFOG00015002117	cpsf2	96	89.673	ENSFHEG00000015465	cpsf2	98	90.065	Fundulus_heteroclitus
ENSSFOG00015002117	cpsf2	100	88.791	ENSGMOG00000008761	cpsf2	100	88.665	Gadus_morhua
ENSSFOG00015002117	cpsf2	100	87.056	ENSGALG00000010783	CPSF2	100	86.929	Gallus_gallus
ENSSFOG00015002117	cpsf2	100	90.494	ENSGAFG00000001407	cpsf2	100	90.368	Gambusia_affinis
ENSSFOG00015002117	cpsf2	100	91.255	ENSGACG00000008418	cpsf2	100	91.128	Gasterosteus_aculeatus
ENSSFOG00015002117	cpsf2	100	87.421	ENSGAGG00000008287	CPSF2	100	87.421	Gopherus_agassizii
ENSSFOG00015002117	cpsf2	100	87.675	ENSGGOG00000011799	CPSF2	100	87.675	Gorilla_gorilla
ENSSFOG00015002117	cpsf2	100	90.875	ENSHBUG00000023466	cpsf2	100	90.621	Haplochromis_burtoni
ENSSFOG00015002117	cpsf2	100	87.294	ENSHGLG00000018311	CPSF2	100	87.294	Heterocephalus_glaber_female
ENSSFOG00015002117	cpsf2	100	87.294	ENSHGLG00100016460	CPSF2	100	87.294	Heterocephalus_glaber_male
ENSSFOG00015002117	cpsf2	100	89.734	ENSHCOG00000019527	cpsf2	98	89.607	Hippocampus_comes
ENSSFOG00015002117	cpsf2	100	91.105	ENSIPUG00000020857	cpsf2	100	91.105	Ictalurus_punctatus
ENSSFOG00015002117	cpsf2	100	87.294	ENSSTOG00000009528	CPSF2	100	87.294	Ictidomys_tridecemlineatus
ENSSFOG00015002117	cpsf2	100	87.166	ENSJJAG00000017925	Cpsf2	100	87.166	Jaculus_jaculus
ENSSFOG00015002117	cpsf2	100	90.114	ENSKMAG00000019429	cpsf2	100	89.987	Kryptolebias_marmoratus
ENSSFOG00015002117	cpsf2	95	90.107	ENSLBEG00000011585	cpsf2	100	90.107	Labrus_bergylta
ENSSFOG00015002117	cpsf2	100	85.006	ENSLACG00000019024	CPSF2	100	84.879	Latimeria_chalumnae
ENSSFOG00015002117	cpsf2	100	92.269	ENSLOCG00000014102	cpsf2	100	92.269	Lepisosteus_oculatus
ENSSFOG00015002117	cpsf2	100	87.199	ENSLAFG00000004891	CPSF2	100	87.199	Loxodonta_africana
ENSSFOG00015002117	cpsf2	100	87.421	ENSMFAG00000041212	CPSF2	100	87.421	Macaca_fascicularis
ENSSFOG00015002117	cpsf2	100	87.421	ENSMMUG00000000699	CPSF2	100	87.421	Macaca_mulatta
ENSSFOG00015002117	cpsf2	100	87.421	ENSMNEG00000031584	CPSF2	100	87.421	Macaca_nemestrina
ENSSFOG00015002117	cpsf2	100	87.421	ENSMLEG00000029394	CPSF2	100	87.421	Mandrillus_leucophaeus
ENSSFOG00015002117	cpsf2	100	91.762	ENSMAMG00000004235	cpsf2	100	91.635	Mastacembelus_armatus
ENSSFOG00015002117	cpsf2	100	91.001	ENSMZEG00005001769	cpsf2	100	90.748	Maylandia_zebra
ENSSFOG00015002117	cpsf2	100	87.072	ENSMGAG00000013122	CPSF2	100	86.946	Meleagris_gallopavo
ENSSFOG00015002117	cpsf2	100	86.658	ENSMAUG00000015160	Cpsf2	100	86.658	Mesocricetus_auratus
ENSSFOG00015002117	cpsf2	100	87.421	ENSMICG00000016441	CPSF2	100	87.421	Microcebus_murinus
ENSSFOG00015002117	cpsf2	100	86.785	ENSMOCG00000015372	Cpsf2	100	86.785	Microtus_ochrogaster
ENSSFOG00015002117	cpsf2	100	85.932	ENSMMOG00000015590	cpsf2	100	85.805	Mola_mola
ENSSFOG00015002117	cpsf2	100	87.421	ENSMODG00000002042	CPSF2	100	87.421	Monodelphis_domestica
ENSSFOG00015002117	cpsf2	100	87.452	ENSMALG00000022275	cpsf2	100	86.946	Monopterus_albus
ENSSFOG00015002117	cpsf2	100	86.785	ENSMUSG00000041781	Cpsf2	100	86.785	Mus_musculus
ENSSFOG00015002117	cpsf2	100	86.658	MGP_PahariEiJ_G0029791	Cpsf2	100	86.658	Mus_pahari
ENSSFOG00015002117	cpsf2	100	86.785	MGP_SPRETEiJ_G0018877	Cpsf2	100	86.785	Mus_spretus
ENSSFOG00015002117	cpsf2	100	87.421	ENSMPUG00000007617	CPSF2	98	87.421	Mustela_putorius_furo
ENSSFOG00015002117	cpsf2	100	87.421	ENSMLUG00000005570	CPSF2	100	87.421	Myotis_lucifugus
ENSSFOG00015002117	cpsf2	100	87.039	ENSNGAG00000020312	Cpsf2	100	87.039	Nannospalax_galili
ENSSFOG00015002117	cpsf2	100	91.255	ENSNBRG00000022402	cpsf2	100	91.001	Neolamprologus_brichardi
ENSSFOG00015002117	cpsf2	100	86.912	ENSNLEG00000017132	CPSF2	100	86.912	Nomascus_leucogenys
ENSSFOG00015002117	cpsf2	91	95.146	ENSMEUG00000008138	CPSF2	91	95.146	Notamacropus_eugenii
ENSSFOG00015002117	cpsf2	94	82.632	ENSOPRG00000008484	-	92	90.134	Ochotona_princeps
ENSSFOG00015002117	cpsf2	100	87.039	ENSODEG00000008682	CPSF2	100	87.039	Octodon_degus
ENSSFOG00015002117	cpsf2	100	91.635	ENSONIG00000005901	cpsf2	100	91.381	Oreochromis_niloticus
ENSSFOG00015002117	cpsf2	100	87.675	ENSOANG00000003822	CPSF2	100	87.675	Ornithorhynchus_anatinus
ENSSFOG00015002117	cpsf2	100	87.166	ENSOCUG00000005713	CPSF2	100	87.166	Oryctolagus_cuniculus
ENSSFOG00015002117	cpsf2	100	84.411	ENSORLG00000011628	cpsf2	100	84.537	Oryzias_latipes
ENSSFOG00015002117	cpsf2	100	90.114	ENSORLG00020016980	cpsf2	100	90.241	Oryzias_latipes_hni
ENSSFOG00015002117	cpsf2	100	90.114	ENSORLG00015011910	cpsf2	100	90.241	Oryzias_latipes_hsok
ENSSFOG00015002117	cpsf2	100	89.480	ENSOMEG00000022876	cpsf2	100	89.480	Oryzias_melastigma
ENSSFOG00015002117	cpsf2	100	84.157	ENSOARG00000012889	CPSF2	100	84.157	Ovis_aries
ENSSFOG00015002117	cpsf2	100	87.675	ENSPPAG00000039666	CPSF2	100	87.675	Pan_paniscus
ENSSFOG00015002117	cpsf2	99	87.150	ENSPPRG00000010869	CPSF2	100	87.150	Panthera_pardus
ENSSFOG00015002117	cpsf2	100	87.166	ENSPTIG00000021202	CPSF2	100	87.166	Panthera_tigris_altaica
ENSSFOG00015002117	cpsf2	100	87.675	ENSPTRG00000006651	CPSF2	100	87.675	Pan_troglodytes
ENSSFOG00015002117	cpsf2	100	87.421	ENSPANG00000017417	CPSF2	100	87.421	Papio_anubis
ENSSFOG00015002117	cpsf2	100	88.691	ENSPKIG00000021453	cpsf2	100	88.691	Paramormyrops_kingsleyae
ENSSFOG00015002117	cpsf2	100	87.039	ENSPSIG00000006289	CPSF2	100	87.039	Pelodiscus_sinensis
ENSSFOG00015002117	cpsf2	76	83.389	ENSPMGG00000002511	cpsf2	100	83.389	Periophthalmus_magnuspinnatus
ENSSFOG00015002117	cpsf2	100	86.912	ENSPEMG00000007917	Cpsf2	100	86.912	Peromyscus_maniculatus_bairdii
ENSSFOG00015002117	cpsf2	100	74.372	ENSPMAG00000006205	cpsf2	100	74.372	Petromyzon_marinus
ENSSFOG00015002117	cpsf2	100	87.421	ENSPCIG00000011393	CPSF2	100	87.421	Phascolarctos_cinereus
ENSSFOG00015002117	cpsf2	100	90.621	ENSPFOG00000018648	cpsf2	100	90.494	Poecilia_formosa
ENSSFOG00015002117	cpsf2	100	90.621	ENSPLAG00000019199	cpsf2	99	90.494	Poecilia_latipinna
ENSSFOG00015002117	cpsf2	96	90.658	ENSPMEG00000012100	cpsf2	100	89.973	Poecilia_mexicana
ENSSFOG00015002117	cpsf2	100	90.494	ENSPREG00000008960	cpsf2	100	90.368	Poecilia_reticulata
ENSSFOG00015002117	cpsf2	64	83.832	ENSPPYG00000029685	-	100	83.832	Pongo_abelii
ENSSFOG00015002117	cpsf2	100	87.421	ENSPCAG00000012477	CPSF2	100	87.421	Procavia_capensis
ENSSFOG00015002117	cpsf2	100	87.421	ENSPCOG00000026387	CPSF2	100	87.421	Propithecus_coquereli
ENSSFOG00015002117	cpsf2	65	92.857	ENSPVAG00000004223	CPSF2	65	92.857	Pteropus_vampyrus
ENSSFOG00015002117	cpsf2	100	90.886	ENSPNYG00000023356	cpsf2	100	90.633	Pundamilia_nyererei
ENSSFOG00015002117	cpsf2	100	92.630	ENSPNAG00000001849	cpsf2	100	92.630	Pygocentrus_nattereri
ENSSFOG00015002117	cpsf2	100	86.785	ENSRNOG00000005733	Cpsf2	100	86.785	Rattus_norvegicus
ENSSFOG00015002117	cpsf2	100	87.421	ENSRBIG00000044792	CPSF2	100	87.421	Rhinopithecus_bieti
ENSSFOG00015002117	cpsf2	100	87.421	ENSRROG00000034875	CPSF2	100	87.421	Rhinopithecus_roxellana
ENSSFOG00015002117	cpsf2	100	87.421	ENSSBOG00000024571	CPSF2	100	87.421	Saimiri_boliviensis_boliviensis
ENSSFOG00015002117	cpsf2	100	87.421	ENSSHAG00000010458	CPSF2	100	87.421	Sarcophilus_harrisii
ENSSFOG00015002117	cpsf2	100	90.241	ENSSMAG00000002001	cpsf2	100	90.241	Scophthalmus_maximus
ENSSFOG00015002117	cpsf2	100	92.269	ENSSDUG00000004084	cpsf2	100	92.142	Seriola_dumerili
ENSSFOG00015002117	cpsf2	100	91.635	ENSSLDG00000024330	cpsf2	100	91.508	Seriola_lalandi_dorsalis
ENSSFOG00015002117	cpsf2	58	96.040	ENSSARG00000009784	-	63	96.040	Sorex_araneus
ENSSFOG00015002117	cpsf2	100	87.294	ENSSPUG00000013485	CPSF2	100	87.294	Sphenodon_punctatus
ENSSFOG00015002117	cpsf2	100	91.381	ENSSPAG00000013284	cpsf2	100	91.255	Stegastes_partitus
ENSSFOG00015002117	cpsf2	100	87.166	ENSSSCG00000002447	CPSF2	100	87.166	Sus_scrofa
ENSSFOG00015002117	cpsf2	100	87.039	ENSTGUG00000012571	-	100	86.802	Taeniopygia_guttata
ENSSFOG00015002117	cpsf2	100	91.001	ENSTRUG00000003742	cpsf2	100	91.001	Takifugu_rubripes
ENSSFOG00015002117	cpsf2	100	88.875	ENSTNIG00000012228	cpsf2	100	89.760	Tetraodon_nigroviridis
ENSSFOG00015002117	cpsf2	91	85.174	ENSTBEG00000004530	CPSF2	94	84.416	Tupaia_belangeri
ENSSFOG00015002117	cpsf2	88	87.500	ENSTTRG00000008697	CPSF2	88	87.500	Tursiops_truncatus
ENSSFOG00015002117	cpsf2	100	87.294	ENSUAMG00000028071	CPSF2	100	87.294	Ursus_americanus
ENSSFOG00015002117	cpsf2	100	87.294	ENSUMAG00000005029	CPSF2	100	91.304	Ursus_maritimus
ENSSFOG00015002117	cpsf2	99	87.150	ENSVPAG00000003503	CPSF2	100	87.150	Vicugna_pacos
ENSSFOG00015002117	cpsf2	100	87.294	ENSVVUG00000024642	CPSF2	100	87.294	Vulpes_vulpes
ENSSFOG00015002117	cpsf2	100	85.896	ENSXETG00000010289	cpsf2	100	85.896	Xenopus_tropicalis
ENSSFOG00015002117	cpsf2	100	90.494	ENSXCOG00000001764	cpsf2	100	90.368	Xiphophorus_couchianus
ENSSFOG00015002117	cpsf2	100	90.875	ENSXMAG00000017048	cpsf2	100	90.748	Xiphophorus_maculatus