EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015002439 (Gene tree)
Gene ID: 108926202
Gene Symbol: edc3
Alias: FLJ21128|LSM16|YJDC|YJEFN2|hYjeF_N2-15q23
Full Name: enhancer of mRNA-decapping protein 3-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 8168 bases
Position: chrKV410852.1:6627215-6635382
Accession: 108926202
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015003755	FDF	PF09532.10	8.8e-06	1	1
ENSSFOP00015003766	FDF	PF09532.10	8.8e-06	1	1
ENSSFOP00015003781	FDF	PF09532.10	9.1e-06	1	1
ENSSFOP00015003755	LSM14	PF12701.7	9.5e-12	1	1
ENSSFOP00015003766	LSM14	PF12701.7	9.5e-12	1	1
ENSSFOP00015003781	LSM14	PF12701.7	2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015003818	-	4272	-	ENSSFOP00015003755	465 (aa)	-	A0A0P7VH74
ENSSFOT00015003829	-	3733	XM_018738781	ENSSFOP00015003766	465 (aa)	XP_018594297	A0A0P7VH74
ENSSFOT00015003844	-	1389	-	ENSSFOP00015003781	462 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015002439's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015002439's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015002439	edc3	100	73.413	ENSSFOG00015016939	edc3	100	73.320

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015002439	edc3	100	64.786	ENSG00000179151	EDC3	100	81.481	Homo_sapiens
ENSSFOG00015002439	edc3	100	74.741	ENSAPOG00000010791	edc3	100	74.327	Acanthochromis_polyacanthus
ENSSFOG00015002439	edc3	100	60.569	ENSAPOG00000008655	EDC3	100	60.366	Acanthochromis_polyacanthus
ENSSFOG00015002439	edc3	100	65.370	ENSAMEG00000008963	EDC3	100	63.813	Ailuropoda_melanoleuca
ENSSFOG00015002439	edc3	100	73.085	ENSACIG00000017751	edc3	100	72.671	Amphilophus_citrinellus
ENSSFOG00015002439	edc3	100	65.795	ENSACIG00000005330	EDC3	99	66.129	Amphilophus_citrinellus
ENSSFOG00015002439	edc3	100	66.878	ENSAOCG00000009103	-	100	66.878	Amphiprion_ocellaris
ENSSFOG00015002439	edc3	100	74.741	ENSAOCG00000005431	edc3	100	74.327	Amphiprion_ocellaris
ENSSFOG00015002439	edc3	100	67.089	ENSAPEG00000007841	EDC3	100	67.089	Amphiprion_percula
ENSSFOG00015002439	edc3	100	74.741	ENSAPEG00000000968	edc3	100	74.327	Amphiprion_percula
ENSSFOG00015002439	edc3	100	67.158	ENSATEG00000004205	-	100	66.737	Anabas_testudineus
ENSSFOG00015002439	edc3	100	74.741	ENSATEG00000015505	edc3	100	74.534	Anabas_testudineus
ENSSFOG00015002439	edc3	76	76.136	ENSAPLG00000008957	EDC3	76	76.136	Anas_platyrhynchos
ENSSFOG00015002439	edc3	76	60.599	ENSACAG00000000460	-	100	57.683	Anolis_carolinensis
ENSSFOG00015002439	edc3	100	64.981	ENSANAG00000024078	EDC3	100	63.333	Aotus_nancymaae
ENSSFOG00015002439	edc3	100	72.878	ENSACLG00000007232	edc3	100	72.464	Astatotilapia_calliptera
ENSSFOG00015002439	edc3	100	68.230	ENSACLG00000018776	-	99	68.376	Astatotilapia_calliptera
ENSSFOG00015002439	edc3	100	72.157	ENSAMXG00000001589	edc3	100	72.047	Astyanax_mexicanus
ENSSFOG00015002439	edc3	100	65.370	ENSBTAG00000007308	EDC3	100	62.157	Bos_taurus
ENSSFOG00015002439	edc3	100	65.370	ENSCJAG00000017681	EDC3	100	63.529	Callithrix_jacchus
ENSSFOG00015002439	edc3	100	64.786	ENSCAFG00000017935	EDC3	100	62.549	Canis_familiaris
ENSSFOG00015002439	edc3	100	64.786	ENSCAFG00020003909	EDC3	100	62.549	Canis_lupus_dingo
ENSSFOG00015002439	edc3	100	65.564	ENSCHIG00000023658	EDC3	100	62.157	Capra_hircus
ENSSFOG00015002439	edc3	100	65.370	ENSTSYG00000004822	EDC3	100	63.922	Carlito_syrichta
ENSSFOG00015002439	edc3	100	65.370	ENSCPOG00000015595	EDC3	100	63.922	Cavia_porcellus
ENSSFOG00015002439	edc3	100	65.175	ENSCCAG00000021663	EDC3	100	63.529	Cebus_capucinus
ENSSFOG00015002439	edc3	100	64.786	ENSCATG00000037511	EDC3	100	64.591	Cercocebus_atys
ENSSFOG00015002439	edc3	100	65.370	ENSCLAG00000005700	EDC3	100	63.725	Chinchilla_lanigera
ENSSFOG00015002439	edc3	100	64.786	ENSCSAG00000014239	EDC3	100	64.591	Chlorocebus_sabaeus
ENSSFOG00015002439	edc3	100	65.175	ENSCPBG00000024239	EDC3	82	78.261	Chrysemys_picta_bellii
ENSSFOG00015002439	edc3	100	36.346	ENSCING00000022142	-	99	36.224	Ciona_intestinalis
ENSSFOG00015002439	edc3	100	64.786	ENSCANG00000028699	EDC3	100	64.591	Colobus_angolensis_palliatus
ENSSFOG00015002439	edc3	100	66.408	ENSCGRG00001013874	Edc3	100	65.953	Cricetulus_griseus_chok1gshd
ENSSFOG00015002439	edc3	100	66.408	ENSCGRG00000011885	Edc3	100	65.953	Cricetulus_griseus_crigri
ENSSFOG00015002439	edc3	99	74.066	ENSCSEG00000012996	edc3	99	73.651	Cynoglossus_semilaevis
ENSSFOG00015002439	edc3	100	73.237	ENSCVAG00000008023	edc3	100	72.822	Cyprinodon_variegatus
ENSSFOG00015002439	edc3	99	71.063	ENSDARG00000051931	edc3	99	71.063	Danio_rerio
ENSSFOG00015002439	edc3	100	57.308	ENSDNOG00000030661	EDC3	100	57.115	Dasypus_novemcinctus
ENSSFOG00015002439	edc3	71	81.481	ENSETEG00000002398	-	64	81.481	Echinops_telfairi
ENSSFOG00015002439	edc3	100	64.981	ENSEASG00005005071	EDC3	100	63.333	Equus_asinus_asinus
ENSSFOG00015002439	edc3	100	64.981	ENSECAG00000017994	EDC3	100	63.333	Equus_caballus
ENSSFOG00015002439	edc3	100	70.928	ENSELUG00000005794	edc3	100	70.722	Esox_lucius
ENSSFOG00015002439	edc3	100	72.537	ENSELUG00000007607	EDC3	100	72.537	Esox_lucius
ENSSFOG00015002439	edc3	100	65.175	ENSFCAG00000002014	EDC3	100	63.333	Felis_catus
ENSSFOG00015002439	edc3	98	63.221	ENSFALG00000004543	EDC3	96	63.221	Ficedula_albicollis
ENSSFOG00015002439	edc3	100	65.175	ENSFDAG00000012582	EDC3	100	63.529	Fukomys_damarensis
ENSSFOG00015002439	edc3	100	72.878	ENSFHEG00000009375	edc3	100	72.671	Fundulus_heteroclitus
ENSSFOG00015002439	edc3	100	73.913	ENSGMOG00000002715	edc3	100	73.706	Gadus_morhua
ENSSFOG00015002439	edc3	100	64.844	ENSGALG00000040181	EDC3	100	62.992	Gallus_gallus
ENSSFOG00015002439	edc3	100	72.257	ENSGAFG00000014433	edc3	100	72.050	Gambusia_affinis
ENSSFOG00015002439	edc3	100	71.843	ENSGACG00000009783	edc3	100	71.843	Gasterosteus_aculeatus
ENSSFOG00015002439	edc3	90	77.612	ENSGACG00000014671	EDC3	82	77.612	Gasterosteus_aculeatus
ENSSFOG00015002439	edc3	100	64.844	ENSGAGG00000023477	EDC3	100	65.234	Gopherus_agassizii
ENSSFOG00015002439	edc3	100	64.786	ENSGGOG00000003552	EDC3	100	63.137	Gorilla_gorilla
ENSSFOG00015002439	edc3	100	72.878	ENSHBUG00000003635	edc3	100	72.464	Haplochromis_burtoni
ENSSFOG00015002439	edc3	100	68.443	ENSHBUG00000020817	EDC3	99	68.590	Haplochromis_burtoni
ENSSFOG00015002439	edc3	100	72.917	ENSHCOG00000016834	edc3	100	72.917	Hippocampus_comes
ENSSFOG00015002439	edc3	99	72.222	ENSIPUG00000005695	edc3	100	71.571	Ictalurus_punctatus
ENSSFOG00015002439	edc3	100	65.564	ENSSTOG00000013936	EDC3	100	64.981	Ictidomys_tridecemlineatus
ENSSFOG00015002439	edc3	100	65.564	ENSJJAG00000008074	Edc3	100	61.036	Jaculus_jaculus
ENSSFOG00015002439	edc3	100	65.751	ENSKMAG00000001987	EDC3	100	65.751	Kryptolebias_marmoratus
ENSSFOG00015002439	edc3	100	72.934	ENSKMAG00000001243	edc3	100	73.554	Kryptolebias_marmoratus
ENSSFOG00015002439	edc3	100	66.105	ENSLBEG00000017984	EDC3	100	66.526	Labrus_bergylta
ENSSFOG00015002439	edc3	100	74.120	ENSLBEG00000013435	edc3	99	73.706	Labrus_bergylta
ENSSFOG00015002439	edc3	100	67.115	ENSLACG00000014149	EDC3	100	63.178	Latimeria_chalumnae
ENSSFOG00015002439	edc3	99	67.525	ENSLOCG00000014625	edc3	99	67.723	Lepisosteus_oculatus
ENSSFOG00015002439	edc3	100	65.497	ENSLAFG00000002992	EDC3	81	79.104	Loxodonta_africana
ENSSFOG00015002439	edc3	100	65.243	ENSMFAG00000043074	EDC3	100	63.992	Macaca_fascicularis
ENSSFOG00015002439	edc3	100	65.243	ENSMMUG00000011071	EDC3	100	63.992	Macaca_mulatta
ENSSFOG00015002439	edc3	100	65.243	ENSMNEG00000035316	EDC3	100	63.992	Macaca_nemestrina
ENSSFOG00015002439	edc3	100	64.786	ENSMLEG00000030372	EDC3	100	64.591	Mandrillus_leucophaeus
ENSSFOG00015002439	edc3	99	67.728	ENSMAMG00000005423	-	99	67.728	Mastacembelus_armatus
ENSSFOG00015002439	edc3	100	73.499	ENSMAMG00000000505	edc3	100	73.706	Mastacembelus_armatus
ENSSFOG00015002439	edc3	100	67.775	ENSMZEG00005005654	EDC3	99	66.806	Maylandia_zebra
ENSSFOG00015002439	edc3	100	72.671	ENSMZEG00005004892	edc3	100	72.257	Maylandia_zebra
ENSSFOG00015002439	edc3	100	64.648	ENSMGAG00000002617	EDC3	100	64.648	Meleagris_gallopavo
ENSSFOG00015002439	edc3	100	65.370	ENSMICG00000043190	EDC3	100	63.250	Microcebus_murinus
ENSSFOG00015002439	edc3	100	64.591	ENSMOCG00000016205	Edc3	100	64.591	Microtus_ochrogaster
ENSSFOG00015002439	edc3	99	74.274	ENSMMOG00000012278	edc3	99	73.859	Mola_mola
ENSSFOG00015002439	edc3	100	65.370	ENSMODG00000009442	EDC3	100	64.314	Monodelphis_domestica
ENSSFOG00015002439	edc3	100	74.327	ENSMALG00000008658	edc3	100	74.120	Monopterus_albus
ENSSFOG00015002439	edc3	90	77.273	MGP_CAROLIEiJ_G0032280	Edc3	100	80.000	Mus_caroli
ENSSFOG00015002439	edc3	90	77.273	ENSMUSG00000038957	Edc3	100	80.000	Mus_musculus
ENSSFOG00015002439	edc3	90	77.273	MGP_PahariEiJ_G0015146	Edc3	100	80.000	Mus_pahari
ENSSFOG00015002439	edc3	90	77.273	MGP_SPRETEiJ_G0033420	Edc3	100	80.000	Mus_spretus
ENSSFOG00015002439	edc3	100	65.370	ENSMPUG00000017293	EDC3	100	62.353	Mustela_putorius_furo
ENSSFOG00015002439	edc3	100	65.116	ENSMLUG00000016382	EDC3	100	65.116	Myotis_lucifugus
ENSSFOG00015002439	edc3	100	64.981	ENSNGAG00000010923	Edc3	100	64.786	Nannospalax_galili
ENSSFOG00015002439	edc3	100	67.635	ENSNBRG00000007881	EDC3	99	66.736	Neolamprologus_brichardi
ENSSFOG00015002439	edc3	100	72.878	ENSNBRG00000002434	edc3	100	72.464	Neolamprologus_brichardi
ENSSFOG00015002439	edc3	100	56.226	ENSNLEG00000014577	EDC3	100	54.510	Nomascus_leucogenys
ENSSFOG00015002439	edc3	100	66.016	ENSMEUG00000009077	EDC3	82	82.090	Notamacropus_eugenii
ENSSFOG00015002439	edc3	87	81.481	ENSOPRG00000009540	-	79	81.481	Ochotona_princeps
ENSSFOG00015002439	edc3	100	72.878	ENSONIG00000008434	edc3	100	72.464	Oreochromis_niloticus
ENSSFOG00015002439	edc3	100	62.913	ENSONIG00000002932	-	99	61.988	Oreochromis_niloticus
ENSSFOG00015002439	edc3	76	60.945	ENSOCUG00000017740	EDC3	86	60.945	Oryctolagus_cuniculus
ENSSFOG00015002439	edc3	100	71.134	ENSORLG00000004883	edc3	100	71.074	Oryzias_latipes
ENSSFOG00015002439	edc3	100	65.612	ENSORLG00000014399	-	98	65.190	Oryzias_latipes
ENSSFOG00015002439	edc3	100	65.612	ENSORLG00020019446	-	100	65.190	Oryzias_latipes_hni
ENSSFOG00015002439	edc3	100	71.340	ENSORLG00020012262	edc3	100	71.281	Oryzias_latipes_hni
ENSSFOG00015002439	edc3	100	65.401	ENSORLG00015017635	-	96	64.979	Oryzias_latipes_hsok
ENSSFOG00015002439	edc3	100	71.546	ENSORLG00015005634	edc3	100	71.488	Oryzias_latipes_hsok
ENSSFOG00015002439	edc3	100	65.678	ENSOMEG00000017354	EDC3	100	65.678	Oryzias_melastigma
ENSSFOG00015002439	edc3	100	73.085	ENSOMEG00000014026	edc3	100	73.140	Oryzias_melastigma
ENSSFOG00015002439	edc3	100	65.370	ENSOGAG00000014441	EDC3	100	63.725	Otolemur_garnettii
ENSSFOG00015002439	edc3	100	65.049	ENSOARG00000003476	EDC3	100	64.384	Ovis_aries
ENSSFOG00015002439	edc3	100	64.786	ENSPPAG00000040143	EDC3	100	63.137	Pan_paniscus
ENSSFOG00015002439	edc3	100	65.175	ENSPPRG00000006257	EDC3	100	64.786	Panthera_pardus
ENSSFOG00015002439	edc3	100	65.175	ENSPTIG00000017424	EDC3	100	64.786	Panthera_tigris_altaica
ENSSFOG00015002439	edc3	100	64.786	ENSPTRG00000007279	EDC3	100	63.137	Pan_troglodytes
ENSSFOG00015002439	edc3	100	64.786	ENSPANG00000015997	EDC3	100	64.591	Papio_anubis
ENSSFOG00015002439	edc3	100	68.452	ENSPKIG00000019810	EDC3	100	68.651	Paramormyrops_kingsleyae
ENSSFOG00015002439	edc3	100	77.362	ENSPKIG00000004416	edc3	100	76.772	Paramormyrops_kingsleyae
ENSSFOG00015002439	edc3	100	61.089	ENSPSIG00000008474	EDC3	81	77.612	Pelodiscus_sinensis
ENSSFOG00015002439	edc3	100	73.499	ENSPMGG00000007223	edc3	100	73.196	Periophthalmus_magnuspinnatus
ENSSFOG00015002439	edc3	100	65.370	ENSPEMG00000015260	Edc3	100	63.922	Peromyscus_maniculatus_bairdii
ENSSFOG00015002439	edc3	100	65.625	ENSPCIG00000006276	EDC3	57	82.090	Phascolarctos_cinereus
ENSSFOG00015002439	edc3	100	73.085	ENSPFOG00000012204	edc3	100	73.347	Poecilia_formosa
ENSSFOG00015002439	edc3	100	73.085	ENSPLAG00000014420	edc3	100	73.347	Poecilia_latipinna
ENSSFOG00015002439	edc3	100	73.085	ENSPMEG00000023289	edc3	100	73.347	Poecilia_mexicana
ENSSFOG00015002439	edc3	100	72.878	ENSPREG00000016022	edc3	100	72.671	Poecilia_reticulata
ENSSFOG00015002439	edc3	100	64.008	ENSPPYG00000006642	EDC3	100	62.353	Pongo_abelii
ENSSFOG00015002439	edc3	87	81.481	ENSPCAG00000002802	EDC3	79	81.481	Procavia_capensis
ENSSFOG00015002439	edc3	100	65.370	ENSPCOG00000013364	EDC3	100	63.725	Propithecus_coquereli
ENSSFOG00015002439	edc3	100	64.740	ENSPVAG00000014733	EDC3	81	80.597	Pteropus_vampyrus
ENSSFOG00015002439	edc3	100	72.878	ENSPNYG00000021797	edc3	100	72.464	Pundamilia_nyererei
ENSSFOG00015002439	edc3	100	68.443	ENSPNYG00000009669	EDC3	99	68.590	Pundamilia_nyererei
ENSSFOG00015002439	edc3	100	73.333	ENSPNAG00000019657	edc3	100	73.425	Pygocentrus_nattereri
ENSSFOG00015002439	edc3	90	77.557	ENSRNOG00000019579	Edc3	99	63.905	Rattus_norvegicus
ENSSFOG00015002439	edc3	100	64.981	ENSRBIG00000019488	EDC3	100	64.981	Rhinopithecus_bieti
ENSSFOG00015002439	edc3	100	64.981	ENSRROG00000034959	EDC3	100	64.981	Rhinopithecus_roxellana
ENSSFOG00015002439	edc3	100	65.175	ENSSBOG00000004896	EDC3	100	63.529	Saimiri_boliviensis_boliviensis
ENSSFOG00015002439	edc3	96	64.909	ENSSHAG00000015075	EDC3	77	82.090	Sarcophilus_harrisii
ENSSFOG00015002439	edc3	99	66.454	ENSSMAG00000010176	-	99	66.454	Scophthalmus_maximus
ENSSFOG00015002439	edc3	100	74.120	ENSSMAG00000010695	edc3	100	73.913	Scophthalmus_maximus
ENSSFOG00015002439	edc3	100	75.155	ENSSDUG00000021844	edc3	100	74.741	Seriola_dumerili
ENSSFOG00015002439	edc3	100	70.402	ENSSDUG00000007671	EDC3	100	69.979	Seriola_dumerili
ENSSFOG00015002439	edc3	100	75.362	ENSSLDG00000022046	edc3	100	74.948	Seriola_lalandi_dorsalis
ENSSFOG00015002439	edc3	82	81.048	ENSSARG00000003907	EDC3	62	82.090	Sorex_araneus
ENSSFOG00015002439	edc3	100	64.008	ENSSPUG00000008232	EDC3	81	80.597	Sphenodon_punctatus
ENSSFOG00015002439	edc3	100	74.534	ENSSPAG00000010009	edc3	100	74.120	Stegastes_partitus
ENSSFOG00015002439	edc3	100	67.089	ENSSPAG00000020327	EDC3	100	67.300	Stegastes_partitus
ENSSFOG00015002439	edc3	100	69.979	ENSSSCG00000001903	EDC3	100	69.767	Sus_scrofa
ENSSFOG00015002439	edc3	100	64.844	ENSTGUG00000004007	EDC3	100	64.844	Taeniopygia_guttata
ENSSFOG00015002439	edc3	100	74.490	ENSTRUG00000017078	edc3	100	74.948	Takifugu_rubripes
ENSSFOG00015002439	edc3	100	74.845	ENSTNIG00000016047	edc3	100	74.433	Tetraodon_nigroviridis
ENSSFOG00015002439	edc3	100	65.430	ENSTTRG00000007990	EDC3	100	65.039	Tursiops_truncatus
ENSSFOG00015002439	edc3	100	65.370	ENSUAMG00000026710	-	100	63.813	Ursus_americanus
ENSSFOG00015002439	edc3	100	65.370	ENSUMAG00000005006	EDC3	96	63.813	Ursus_maritimus
ENSSFOG00015002439	edc3	87	72.222	ENSVPAG00000003499	-	79	72.222	Vicugna_pacos
ENSSFOG00015002439	edc3	100	64.786	ENSVVUG00000018601	EDC3	100	63.619	Vulpes_vulpes
ENSSFOG00015002439	edc3	76	72.805	ENSXETG00000010622	edc3	99	73.938	Xenopus_tropicalis
ENSSFOG00015002439	edc3	100	72.464	ENSXMAG00000007377	edc3	100	72.257	Xiphophorus_maculatus