EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015002645 (Gene tree)
Gene ID: 108918804
Gene Symbol: casc3
Alias: -
Full Name: CASC3%2C exon junction complex subunit
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 10686 bases
Position: chrKV411256.1:1164937-1175622
Accession: 108918804
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015004016	Btz	PF09405.10	3.1e-21	1	1
ENSSFOP00015004031	Btz	PF09405.10	3.2e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015004080	-	4855	XM_018726365	ENSSFOP00015004016	760 (aa)	XP_018581881	A0A1W4Y0Y1
ENSSFOT00015004095	-	4793	XM_018726364	ENSSFOP00015004031	765 (aa)	XP_018581880	A0A1W4Y059

Gene Model

Click here to download ENSSFOG00015002645's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03013	RNA transport	KEGG
sfm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015002645's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015002645	casc3	60	75.182	ENSACIG00000000720	casc3	84	65.574	Amphilophus_citrinellus
ENSSFOG00015002645	casc3	92	47.172	ENSACAG00000002674	CASC3	85	47.257	Anolis_carolinensis
ENSSFOG00015002645	casc3	71	58.599	ENSANAG00000034820	-	89	60.510	Aotus_nancymaae
ENSSFOG00015002645	casc3	99	62.484	ENSAMXG00000032452	casc3	98	62.159	Astyanax_mexicanus
ENSSFOG00015002645	casc3	92	49.231	ENSBTAG00000006250	CASC3	82	61.514	Bos_taurus
ENSSFOG00015002645	casc3	70	59.295	ENSCAFG00020018882	CASC3	90	61.199	Canis_lupus_dingo
ENSSFOG00015002645	casc3	92	49.440	ENSCHIG00000006338	CASC3	71	62.179	Capra_hircus
ENSSFOG00015002645	casc3	99	47.191	ENSCPBG00000004750	CASC3	95	49.441	Chrysemys_picta_bellii
ENSSFOG00015002645	casc3	99	61.017	ENSDARG00000029911	casc3	98	60.887	Danio_rerio
ENSSFOG00015002645	casc3	78	41.528	ENSEBUG00000010654	casc3	76	42.788	Eptatretus_burgeri
ENSSFOG00015002645	casc3	70	59.295	ENSEASG00005002909	CASC3	90	60.568	Equus_asinus_asinus
ENSSFOG00015002645	casc3	68	41.143	ENSEEUG00000014253	CASC3	53	51.186	Erinaceus_europaeus
ENSSFOG00015002645	casc3	99	56.663	ENSELUG00000015093	casc3	99	57.305	Esox_lucius
ENSSFOG00015002645	casc3	92	44.669	ENSFALG00000000412	CASC3	99	45.997	Ficedula_albicollis
ENSSFOG00015002645	casc3	81	52.305	ENSGAGG00000008432	CASC3	82	62.975	Gopherus_agassizii
ENSSFOG00015002645	casc3	99	57.308	ENSIPUG00000002679	casc3	98	57.717	Ictalurus_punctatus
ENSSFOG00015002645	casc3	56	83.505	ENSKMAG00000019507	casc3	62	70.992	Kryptolebias_marmoratus
ENSSFOG00015002645	casc3	80	54.421	ENSLBEG00000005435	casc3	99	52.421	Labrus_bergylta
ENSSFOG00015002645	casc3	91	47.109	ENSLACG00000013200	CASC3	99	46.526	Latimeria_chalumnae
ENSSFOG00015002645	casc3	71	80.930	ENSLOCG00000013518	casc3	67	80.930	Lepisosteus_oculatus
ENSSFOG00015002645	casc3	92	48.117	ENSMFAG00000041496	CASC3	90	61.514	Macaca_fascicularis
ENSSFOG00015002645	casc3	80	51.282	ENSMGAG00000013247	CASC3	99	50.356	Meleagris_gallopavo
ENSSFOG00015002645	casc3	81	50.000	ENSMODG00000013044	CASC3	90	46.632	Monodelphis_domestica
ENSSFOG00015002645	casc3	61	60.952	ENSMALG00000019771	casc3	69	75.200	Monopterus_albus
ENSSFOG00015002645	casc3	76	68.456	ENSMEUG00000015662	CASC3	99	40.110	Notamacropus_eugenii
ENSSFOG00015002645	casc3	51	48.246	ENSOANG00000003499	-	70	48.869	Ornithorhynchus_anatinus
ENSSFOG00015002645	casc3	99	73.935	ENSPKIG00000023186	casc3	99	72.526	Paramormyrops_kingsleyae
ENSSFOG00015002645	casc3	92	49.025	ENSPCIG00000025678	CASC3	99	48.454	Phascolarctos_cinereus
ENSSFOG00015002645	casc3	64	75.540	ENSPREG00000011856	casc3	84	63.961	Poecilia_reticulata
ENSSFOG00015002645	casc3	59	72.297	ENSPCOG00000008183	CASC3	71	60.883	Propithecus_coquereli
ENSSFOG00015002645	casc3	99	62.274	ENSPNAG00000015928	casc3	98	62.663	Pygocentrus_nattereri
ENSSFOG00015002645	casc3	62	69.281	ENSRNOG00000009716	Casc3	89	60.883	Rattus_norvegicus
ENSSFOG00015002645	casc3	91	48.873	ENSSHAG00000013338	CASC3	99	48.656	Sarcophilus_harrisii
ENSSFOG00015002645	casc3	72	58.805	ENSSLDG00000020308	casc3	88	63.487	Seriola_lalandi_dorsalis
ENSSFOG00015002645	casc3	81	44.762	ENSSARG00000010378	CASC3	67	61.859	Sorex_araneus
ENSSFOG00015002645	casc3	75	49.153	ENSTGUG00000002300	CASC3	99	47.492	Taeniopygia_guttata
ENSSFOG00015002645	casc3	61	67.773	ENSTBEG00000017459	CASC3	65	70.142	Tupaia_belangeri
ENSSFOG00015002645	casc3	55	58.360	ENSTTRG00000016896	CASC3	67	60.568	Tursiops_truncatus
ENSSFOG00015002645	casc3	70	59.936	ENSUAMG00000015116	CASC3	90	61.199	Ursus_americanus
ENSSFOG00015002645	casc3	59	69.595	ENSUMAG00000017697	CASC3	85	69.595	Ursus_maritimus