EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015002660 (Gene tree)
Gene ID: 108942675
Gene Symbol: si:dkey-85a20.4
Alias: -
Full Name: TAR (HIV-1) RNA binding protein 1
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 19264 bases
Position: chrKV411250.1:9634581-9653844
Accession: 108942675
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015004259	SpoU_methylase	PF00588.19	4.4e-29	1	1
ENSSFOP00015004243	SpoU_methylase	PF00588.19	5.1e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015004310	-	4500	-	ENSSFOP00015004243	1499 (aa)	-	-
ENSSFOT00015004327	-	4056	XM_018766134	ENSSFOP00015004259	1351 (aa)	XP_018621650	-

Gene Model

Click here to download ENSSFOG00015002660's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015002660's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015002660	si:dkey-85a20.4	97	47.380	ENSG00000059588	TARBP1	84	46.076	Homo_sapiens
ENSSFOG00015002660	si:dkey-85a20.4	97	61.288	ENSAPOG00000016419	si:dkey-85a20.4	99	54.154	Acanthochromis_polyacanthus
ENSSFOG00015002660	si:dkey-85a20.4	96	44.866	ENSAMEG00000003359	TARBP1	99	43.894	Ailuropoda_melanoleuca
ENSSFOG00015002660	si:dkey-85a20.4	97	60.850	ENSATEG00000020266	si:dkey-85a20.4	99	53.370	Anabas_testudineus
ENSSFOG00015002660	si:dkey-85a20.4	97	47.541	ENSAPLG00000007666	TARBP1	99	47.541	Anas_platyrhynchos
ENSSFOG00015002660	si:dkey-85a20.4	96	44.765	ENSACAG00000001142	TARBP1	85	44.122	Anolis_carolinensis
ENSSFOG00015002660	si:dkey-85a20.4	93	47.218	ENSANAG00000022031	TARBP1	87	44.975	Aotus_nancymaae
ENSSFOG00015002660	si:dkey-85a20.4	96	46.108	ENSBTAG00000004517	TARBP1	82	52.308	Bos_taurus
ENSSFOG00015002660	si:dkey-85a20.4	97	47.006	ENSCJAG00000018155	TARBP1	84	46.104	Callithrix_jacchus
ENSSFOG00015002660	si:dkey-85a20.4	97	45.602	ENSCAFG00000011533	TARBP1	96	45.054	Canis_familiaris
ENSSFOG00015002660	si:dkey-85a20.4	97	45.784	ENSCAFG00020027141	TARBP1	83	45.047	Canis_lupus_dingo
ENSSFOG00015002660	si:dkey-85a20.4	96	46.611	ENSCHIG00000011437	TARBP1	84	45.507	Capra_hircus
ENSSFOG00015002660	si:dkey-85a20.4	96	46.281	ENSTSYG00000010382	TARBP1	96	46.356	Carlito_syrichta
ENSSFOG00015002660	si:dkey-85a20.4	94	43.455	ENSCAPG00000010831	TARBP1	99	43.310	Cavia_aperea
ENSSFOG00015002660	si:dkey-85a20.4	97	46.148	ENSCPOG00000013995	TARBP1	85	45.238	Cavia_porcellus
ENSSFOG00015002660	si:dkey-85a20.4	97	47.226	ENSCCAG00000037278	TARBP1	91	44.265	Cebus_capucinus
ENSSFOG00015002660	si:dkey-85a20.4	97	46.801	ENSCATG00000011754	TARBP1	91	44.265	Cercocebus_atys
ENSSFOG00015002660	si:dkey-85a20.4	96	45.556	ENSCLAG00000003655	TARBP1	96	45.509	Chinchilla_lanigera
ENSSFOG00015002660	si:dkey-85a20.4	95	47.027	ENSCSAG00000010100	TARBP1	99	47.027	Chlorocebus_sabaeus
ENSSFOG00015002660	si:dkey-85a20.4	91	45.267	ENSCPBG00000005587	TARBP1	76	53.357	Chrysemys_picta_bellii
ENSSFOG00015002660	si:dkey-85a20.4	97	47.041	ENSCANG00000034343	TARBP1	99	45.882	Colobus_angolensis_palliatus
ENSSFOG00015002660	si:dkey-85a20.4	97	46.051	ENSCGRG00001016690	Tarbp1	99	41.853	Cricetulus_griseus_chok1gshd
ENSSFOG00015002660	si:dkey-85a20.4	97	46.051	ENSCGRG00000016893	Tarbp1	93	44.778	Cricetulus_griseus_crigri
ENSSFOG00015002660	si:dkey-85a20.4	97	55.277	ENSCSEG00000005255	si:dkey-85a20.4	99	57.927	Cynoglossus_semilaevis
ENSSFOG00015002660	si:dkey-85a20.4	96	61.103	ENSDARG00000079055	si:dkey-85a20.4	99	70.826	Danio_rerio
ENSSFOG00015002660	si:dkey-85a20.4	96	45.970	ENSDNOG00000008637	TARBP1	82	44.899	Dasypus_novemcinctus
ENSSFOG00015002660	si:dkey-85a20.4	96	46.727	ENSDORG00000007984	Tarbp1	100	46.647	Dipodomys_ordii
ENSSFOG00015002660	si:dkey-85a20.4	96	46.592	ENSEASG00005000252	TARBP1	84	45.369	Equus_asinus_asinus
ENSSFOG00015002660	si:dkey-85a20.4	96	46.622	ENSECAG00000023673	TARBP1	84	45.770	Equus_caballus
ENSSFOG00015002660	si:dkey-85a20.4	96	63.456	ENSELUG00000012193	si:dkey-85a20.4	99	57.116	Esox_lucius
ENSSFOG00015002660	si:dkey-85a20.4	96	44.048	ENSFCAG00000014183	TARBP1	83	43.259	Felis_catus
ENSSFOG00015002660	si:dkey-85a20.4	97	46.171	ENSFALG00000013565	TARBP1	99	46.026	Ficedula_albicollis
ENSSFOG00015002660	si:dkey-85a20.4	95	44.694	ENSFDAG00000001308	TARBP1	99	44.686	Fukomys_damarensis
ENSSFOG00015002660	si:dkey-85a20.4	91	65.087	ENSFHEG00000007565	si:dkey-85a20.4	95	67.380	Fundulus_heteroclitus
ENSSFOG00015002660	si:dkey-85a20.4	97	58.296	ENSGMOG00000004549	si:dkey-85a20.4	98	57.426	Gadus_morhua
ENSSFOG00015002660	si:dkey-85a20.4	97	43.475	ENSGALG00000011000	TARBP1	85	45.501	Gallus_gallus
ENSSFOG00015002660	si:dkey-85a20.4	97	58.584	ENSGAFG00000007387	si:dkey-85a20.4	90	57.565	Gambusia_affinis
ENSSFOG00015002660	si:dkey-85a20.4	97	61.045	ENSGACG00000005865	si:dkey-85a20.4	98	59.286	Gasterosteus_aculeatus
ENSSFOG00015002660	si:dkey-85a20.4	98	46.843	ENSGAGG00000012102	TARBP1	87	46.486	Gopherus_agassizii
ENSSFOG00015002660	si:dkey-85a20.4	97	45.577	ENSGGOG00000022879	TARBP1	99	44.340	Gorilla_gorilla
ENSSFOG00015002660	si:dkey-85a20.4	97	61.480	ENSHBUG00000008877	si:dkey-85a20.4	99	54.121	Haplochromis_burtoni
ENSSFOG00015002660	si:dkey-85a20.4	97	46.114	ENSHGLG00000011592	TARBP1	85	45.396	Heterocephalus_glaber_female
ENSSFOG00015002660	si:dkey-85a20.4	97	46.142	ENSHGLG00100015169	TARBP1	94	45.494	Heterocephalus_glaber_male
ENSSFOG00015002660	si:dkey-85a20.4	97	57.371	ENSIPUG00000005249	si:dkey-85a20.4	93	54.325	Ictalurus_punctatus
ENSSFOG00015002660	si:dkey-85a20.4	97	45.251	ENSSTOG00000032291	TARBP1	96	44.978	Ictidomys_tridecemlineatus
ENSSFOG00015002660	si:dkey-85a20.4	99	43.687	ENSJJAG00000017840	Tarbp1	94	43.073	Jaculus_jaculus
ENSSFOG00015002660	si:dkey-85a20.4	88	62.331	ENSKMAG00000017546	si:dkey-85a20.4	87	57.160	Kryptolebias_marmoratus
ENSSFOG00015002660	si:dkey-85a20.4	78	65.067	ENSLBEG00000012132	si:dkey-85a20.4	85	65.067	Labrus_bergylta
ENSSFOG00015002660	si:dkey-85a20.4	96	47.875	ENSLACG00000004337	TARBP1	84	47.500	Latimeria_chalumnae
ENSSFOG00015002660	si:dkey-85a20.4	96	61.656	ENSLOCG00000016214	si:dkey-85a20.4	89	59.706	Lepisosteus_oculatus
ENSSFOG00015002660	si:dkey-85a20.4	97	45.920	ENSLAFG00000011394	TARBP1	87	44.595	Loxodonta_africana
ENSSFOG00015002660	si:dkey-85a20.4	97	45.787	ENSMFAG00000041068	TARBP1	85	44.571	Macaca_fascicularis
ENSSFOG00015002660	si:dkey-85a20.4	97	45.638	ENSMMUG00000021703	TARBP1	83	44.548	Macaca_mulatta
ENSSFOG00015002660	si:dkey-85a20.4	97	47.305	ENSMNEG00000045002	TARBP1	91	44.121	Macaca_nemestrina
ENSSFOG00015002660	si:dkey-85a20.4	97	47.116	ENSMLEG00000044182	TARBP1	99	45.752	Mandrillus_leucophaeus
ENSSFOG00015002660	si:dkey-85a20.4	97	61.597	ENSMAMG00000021760	si:dkey-85a20.4	99	55.507	Mastacembelus_armatus
ENSSFOG00015002660	si:dkey-85a20.4	97	61.480	ENSMZEG00005005751	si:dkey-85a20.4	99	53.998	Maylandia_zebra
ENSSFOG00015002660	si:dkey-85a20.4	97	46.439	ENSMAUG00000020968	Tarbp1	85	45.646	Mesocricetus_auratus
ENSSFOG00015002660	si:dkey-85a20.4	98	41.845	ENSMICG00000015280	TARBP1	82	41.262	Microcebus_murinus
ENSSFOG00015002660	si:dkey-85a20.4	97	46.131	ENSMOCG00000004128	Tarbp1	85	45.349	Microtus_ochrogaster
ENSSFOG00015002660	si:dkey-85a20.4	96	58.711	ENSMMOG00000007795	si:dkey-85a20.4	99	52.602	Mola_mola
ENSSFOG00015002660	si:dkey-85a20.4	98	46.919	ENSMODG00000008504	TARBP1	82	46.642	Monodelphis_domestica
ENSSFOG00015002660	si:dkey-85a20.4	96	59.923	ENSMALG00000002916	si:dkey-85a20.4	99	54.413	Monopterus_albus
ENSSFOG00015002660	si:dkey-85a20.4	97	46.171	MGP_CAROLIEiJ_G0031729	Tarbp1	78	61.240	Mus_caroli
ENSSFOG00015002660	si:dkey-85a20.4	97	46.296	ENSMUSG00000090290	Tarbp1	86	45.004	Mus_musculus
ENSSFOG00015002660	si:dkey-85a20.4	97	46.137	MGP_PahariEiJ_G0023326	Tarbp1	86	44.957	Mus_pahari
ENSSFOG00015002660	si:dkey-85a20.4	97	46.444	MGP_SPRETEiJ_G0032846	Tarbp1	86	45.291	Mus_spretus
ENSSFOG00015002660	si:dkey-85a20.4	92	45.810	ENSMPUG00000002802	TARBP1	99	45.890	Mustela_putorius_furo
ENSSFOG00015002660	si:dkey-85a20.4	99	44.509	ENSMLUG00000002414	TARBP1	99	44.245	Myotis_lucifugus
ENSSFOG00015002660	si:dkey-85a20.4	97	47.231	ENSNLEG00000002518	TARBP1	84	46.220	Nomascus_leucogenys
ENSSFOG00015002660	si:dkey-85a20.4	77	53.279	ENSOPRG00000013822	TARBP1	68	53.443	Ochotona_princeps
ENSSFOG00015002660	si:dkey-85a20.4	97	45.880	ENSODEG00000005238	TARBP1	99	42.225	Octodon_degus
ENSSFOG00015002660	si:dkey-85a20.4	97	61.312	ENSONIG00000009789	si:dkey-85a20.4	98	60.029	Oreochromis_niloticus
ENSSFOG00015002660	si:dkey-85a20.4	97	46.399	ENSOCUG00000017418	TARBP1	84	45.624	Oryctolagus_cuniculus
ENSSFOG00015002660	si:dkey-85a20.4	97	58.712	ENSORLG00000010529	si:dkey-85a20.4	90	57.723	Oryzias_latipes
ENSSFOG00015002660	si:dkey-85a20.4	97	58.699	ENSORLG00020019264	si:dkey-85a20.4	89	58.107	Oryzias_latipes_hni
ENSSFOG00015002660	si:dkey-85a20.4	97	58.333	ENSORLG00015003276	si:dkey-85a20.4	90	57.505	Oryzias_latipes_hsok
ENSSFOG00015002660	si:dkey-85a20.4	98	45.159	ENSOGAG00000002379	TARBP1	83	44.509	Otolemur_garnettii
ENSSFOG00015002660	si:dkey-85a20.4	96	46.246	ENSOARG00000003434	TARBP1	99	43.169	Ovis_aries
ENSSFOG00015002660	si:dkey-85a20.4	97	47.116	ENSPPAG00000028097	TARBP1	99	45.893	Pan_paniscus
ENSSFOG00015002660	si:dkey-85a20.4	91	46.667	ENSPPRG00000013561	TARBP1	99	40.966	Panthera_pardus
ENSSFOG00015002660	si:dkey-85a20.4	96	45.874	ENSPTIG00000009281	TARBP1	99	45.055	Panthera_tigris_altaica
ENSSFOG00015002660	si:dkey-85a20.4	97	47.305	ENSPTRG00000002124	TARBP1	83	46.076	Pan_troglodytes
ENSSFOG00015002660	si:dkey-85a20.4	97	47.305	ENSPANG00000021933	TARBP1	84	46.148	Papio_anubis
ENSSFOG00015002660	si:dkey-85a20.4	97	71.407	ENSPKIG00000016716	si:dkey-85a20.4	95	66.079	Paramormyrops_kingsleyae
ENSSFOG00015002660	si:dkey-85a20.4	95	46.183	ENSPSIG00000010699	TARBP1	99	46.565	Pelodiscus_sinensis
ENSSFOG00015002660	si:dkey-85a20.4	98	45.622	ENSPEMG00000006888	Tarbp1	99	42.391	Peromyscus_maniculatus_bairdii
ENSSFOG00015002660	si:dkey-85a20.4	87	67.839	ENSPCIG00000029710	TARBP1	81	68.718	Phascolarctos_cinereus
ENSSFOG00015002660	si:dkey-85a20.4	97	58.872	ENSPFOG00000013020	si:dkey-85a20.4	99	57.504	Poecilia_formosa
ENSSFOG00015002660	si:dkey-85a20.4	97	58.717	ENSPLAG00000006044	si:dkey-85a20.4	99	52.518	Poecilia_latipinna
ENSSFOG00015002660	si:dkey-85a20.4	97	58.717	ENSPMEG00000017857	si:dkey-85a20.4	99	52.150	Poecilia_mexicana
ENSSFOG00015002660	si:dkey-85a20.4	97	58.321	ENSPREG00000022753	si:dkey-85a20.4	99	52.083	Poecilia_reticulata
ENSSFOG00015002660	si:dkey-85a20.4	85	54.902	ENSPPYG00000000102	TARBP1	90	45.631	Pongo_abelii
ENSSFOG00015002660	si:dkey-85a20.4	77	52.529	ENSPCAG00000004808	TARBP1	69	52.529	Procavia_capensis
ENSSFOG00015002660	si:dkey-85a20.4	98	44.305	ENSPCOG00000005666	TARBP1	84	43.300	Propithecus_coquereli
ENSSFOG00015002660	si:dkey-85a20.4	91	60.279	ENSPVAG00000014798	TARBP1	85	39.337	Pteropus_vampyrus
ENSSFOG00015002660	si:dkey-85a20.4	97	60.213	ENSPNYG00000019135	si:dkey-85a20.4	99	53.976	Pundamilia_nyererei
ENSSFOG00015002660	si:dkey-85a20.4	97	44.370	ENSRNOG00000053574	Tarbp1	85	43.437	Rattus_norvegicus
ENSSFOG00015002660	si:dkey-85a20.4	98	43.523	ENSRBIG00000043362	TARBP1	92	43.095	Rhinopithecus_bieti
ENSSFOG00015002660	si:dkey-85a20.4	98	46.820	ENSRROG00000029527	TARBP1	87	46.004	Rhinopithecus_roxellana
ENSSFOG00015002660	si:dkey-85a20.4	97	46.771	ENSSBOG00000034503	TARBP1	96	46.109	Saimiri_boliviensis_boliviensis
ENSSFOG00015002660	si:dkey-85a20.4	98	46.012	ENSSHAG00000000013	TARBP1	99	44.982	Sarcophilus_harrisii
ENSSFOG00015002660	si:dkey-85a20.4	97	62.938	ENSSMAG00000007081	si:dkey-85a20.4	83	60.725	Scophthalmus_maximus
ENSSFOG00015002660	si:dkey-85a20.4	97	60.076	ENSSDUG00000023566	si:dkey-85a20.4	99	54.940	Seriola_dumerili
ENSSFOG00015002660	si:dkey-85a20.4	97	62.150	ENSSLDG00000020200	si:dkey-85a20.4	100	54.862	Seriola_lalandi_dorsalis
ENSSFOG00015002660	si:dkey-85a20.4	90	55.023	ENSSARG00000012207	TARBP1	76	55.023	Sorex_araneus
ENSSFOG00015002660	si:dkey-85a20.4	97	45.251	ENSSPUG00000015364	TARBP1	84	45.374	Sphenodon_punctatus
ENSSFOG00015002660	si:dkey-85a20.4	97	61.667	ENSSPAG00000007213	si:dkey-85a20.4	99	53.912	Stegastes_partitus
ENSSFOG00015002660	si:dkey-85a20.4	93	52.459	ENSSSCG00000010160	TARBP1	79	52.459	Sus_scrofa
ENSSFOG00015002660	si:dkey-85a20.4	96	46.257	ENSTGUG00000010214	TARBP1	99	46.257	Taeniopygia_guttata
ENSSFOG00015002660	si:dkey-85a20.4	99	58.216	ENSTNIG00000016586	si:dkey-85a20.4	100	57.331	Tetraodon_nigroviridis
ENSSFOG00015002660	si:dkey-85a20.4	91	42.484	ENSTTRG00000008707	TARBP1	83	41.616	Tursiops_truncatus
ENSSFOG00015002660	si:dkey-85a20.4	98	43.800	ENSUMAG00000006730	TARBP1	97	45.007	Ursus_maritimus
ENSSFOG00015002660	si:dkey-85a20.4	72	73.118	ENSVPAG00000007665	TARBP1	75	73.118	Vicugna_pacos
ENSSFOG00015002660	si:dkey-85a20.4	97	45.892	ENSVVUG00000007460	TARBP1	98	46.840	Vulpes_vulpes
ENSSFOG00015002660	si:dkey-85a20.4	97	43.727	ENSXETG00000016224	tarbp1	99	43.292	Xenopus_tropicalis
ENSSFOG00015002660	si:dkey-85a20.4	94	60.769	ENSXCOG00000011779	si:dkey-85a20.4	91	60.769	Xiphophorus_couchianus
ENSSFOG00015002660	si:dkey-85a20.4	78	56.338	ENSXMAG00000009600	si:dkey-85a20.4	100	56.338	Xiphophorus_maculatus