EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015002870 (Gene tree)
Gene ID: 108936420
Gene Symbol: snrpb
Alias: zgc:77315
Full Name: small nuclear ribonucleoprotein polypeptides B and B1
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 4809 bases
Position: chrKV411121.1:8225419-8230227
Accession: 108936420
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015004426	LSM	PF01423.22	1e-19	1	1
ENSSFOP00015004409	LSM	PF01423.22	1e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015004495	-	711	-	ENSSFOP00015004426	236 (aa)	-	-
ENSSFOT00015004478	-	1084	XM_018755761	ENSSFOP00015004409	237 (aa)	XP_018611277	A0A0P7XJH0

Gene Model

Click here to download ENSSFOG00015002870's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015002870's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015002870	snrpb	70	93.452	ENSG00000125835	SNRPB	74	100.000	Homo_sapiens
ENSSFOG00015002870	snrpb	99	96.218	ENSAPOG00000019606	snrpb	81	96.218	Acanthochromis_polyacanthus
ENSSFOG00015002870	snrpb	70	93.413	ENSAMEG00000011353	SNRPB	69	92.216	Ailuropoda_melanoleuca
ENSSFOG00015002870	snrpb	94	95.133	ENSACIG00000014480	snrpb	100	95.133	Amphilophus_citrinellus
ENSSFOG00015002870	snrpb	99	95.798	ENSAOCG00000006876	snrpb	99	95.798	Amphiprion_ocellaris
ENSSFOG00015002870	snrpb	99	95.798	ENSAPEG00000021585	snrpb	99	95.798	Amphiprion_percula
ENSSFOG00015002870	snrpb	99	95.378	ENSATEG00000009836	snrpb	99	95.378	Anabas_testudineus
ENSSFOG00015002870	snrpb	67	94.375	ENSACAG00000002053	SNRPB	69	93.125	Anolis_carolinensis
ENSSFOG00015002870	snrpb	70	93.452	ENSANAG00000024443	-	73	92.262	Aotus_nancymaae
ENSSFOG00015002870	snrpb	90	87.442	ENSANAG00000036271	-	68	84.524	Aotus_nancymaae
ENSSFOG00015002870	snrpb	99	96.218	ENSACLG00000014707	snrpb	99	96.218	Astatotilapia_calliptera
ENSSFOG00015002870	snrpb	100	97.059	ENSAMXG00000029434	snrpb	100	97.059	Astyanax_mexicanus
ENSSFOG00015002870	snrpb	86	87.019	ENSBTAG00000001038	SNRPB	73	92.262	Bos_taurus
ENSSFOG00015002870	snrpb	70	93.452	ENSCJAG00000020971	-	73	92.262	Callithrix_jacchus
ENSSFOG00015002870	snrpb	89	85.981	ENSCJAG00000023097	-	70	86.310	Callithrix_jacchus
ENSSFOG00015002870	snrpb	70	93.452	ENSCAFG00000006693	-	73	92.262	Canis_familiaris
ENSSFOG00015002870	snrpb	76	80.435	ENSCAFG00000031109	-	70	81.065	Canis_familiaris
ENSSFOG00015002870	snrpb	70	93.452	ENSCAFG00020016981	-	70	92.262	Canis_lupus_dingo
ENSSFOG00015002870	snrpb	76	93.443	ENSCHIG00000025449	-	73	92.262	Capra_hircus
ENSSFOG00015002870	snrpb	97	72.489	ENSTSYG00000032303	-	55	75.333	Carlito_syrichta
ENSSFOG00015002870	snrpb	70	93.452	ENSTSYG00000014498	-	73	92.262	Carlito_syrichta
ENSSFOG00015002870	snrpb	70	93.413	ENSCAPG00000012669	SNRPB	73	92.216	Cavia_aperea
ENSSFOG00015002870	snrpb	70	93.452	ENSCPOG00000039408	SNRPB	73	92.262	Cavia_porcellus
ENSSFOG00015002870	snrpb	70	93.452	ENSCCAG00000026002	SNRPB	73	92.262	Cebus_capucinus
ENSSFOG00015002870	snrpb	54	82.677	ENSCCAG00000035140	-	89	86.275	Cebus_capucinus
ENSSFOG00015002870	snrpb	70	93.452	ENSCATG00000030230	SNRPB	73	92.262	Cercocebus_atys
ENSSFOG00015002870	snrpb	70	93.452	ENSCLAG00000012442	SNRPB	71	92.262	Chinchilla_lanigera
ENSSFOG00015002870	snrpb	70	93.452	ENSCSAG00000010840	SNRPB	73	92.262	Chlorocebus_sabaeus
ENSSFOG00015002870	snrpb	70	95.238	ENSCPBG00000026801	SNRPB	73	94.048	Chrysemys_picta_bellii
ENSSFOG00015002870	snrpb	70	93.452	ENSCANG00000019461	SNRPB	73	92.262	Colobus_angolensis_palliatus
ENSSFOG00015002870	snrpb	70	93.452	ENSCGRG00001023046	Snrpb	73	92.262	Cricetulus_griseus_chok1gshd
ENSSFOG00015002870	snrpb	68	93.252	ENSCGRG00000010423	Snrpb	71	91.875	Cricetulus_griseus_crigri
ENSSFOG00015002870	snrpb	99	97.034	ENSCSEG00000020328	snrpb	99	97.034	Cynoglossus_semilaevis
ENSSFOG00015002870	snrpb	99	97.458	ENSDARG00000011125	snrpb	99	97.458	Danio_rerio
ENSSFOG00015002870	snrpb	70	87.500	ENSDNOG00000007896	-	69	86.310	Dasypus_novemcinctus
ENSSFOG00015002870	snrpb	70	93.452	ENSDNOG00000015545	-	70	92.262	Dasypus_novemcinctus
ENSSFOG00015002870	snrpb	74	93.220	ENSDORG00000029558	Snrpb	70	91.975	Dipodomys_ordii
ENSSFOG00015002870	snrpb	75	63.277	FBgn0262601	SmB	74	69.128	Drosophila_melanogaster
ENSSFOG00015002870	snrpb	76	79.891	ENSEBUG00000007467	SNRPB	62	87.919	Eptatretus_burgeri
ENSSFOG00015002870	snrpb	70	92.857	ENSEASG00005012991	SNRPB	73	91.667	Equus_asinus_asinus
ENSSFOG00015002870	snrpb	70	93.452	ENSECAG00000011944	SNRPB	73	92.262	Equus_caballus
ENSSFOG00015002870	snrpb	70	93.452	ENSEEUG00000015568	SNRPB	59	92.262	Erinaceus_europaeus
ENSSFOG00015002870	snrpb	100	96.639	ENSELUG00000014564	snrpb	100	96.639	Esox_lucius
ENSSFOG00015002870	snrpb	70	93.452	ENSFCAG00000034090	-	73	92.262	Felis_catus
ENSSFOG00015002870	snrpb	73	94.286	ENSFALG00000004866	SNRPB	69	93.750	Ficedula_albicollis
ENSSFOG00015002870	snrpb	70	93.452	ENSFDAG00000009937	SNRPB	73	92.262	Fukomys_damarensis
ENSSFOG00015002870	snrpb	76	94.536	ENSGALG00000035421	SNRPN	70	94.048	Gallus_gallus
ENSSFOG00015002870	snrpb	72	97.059	ENSGAFG00000019558	snrpb	73	97.006	Gambusia_affinis
ENSSFOG00015002870	snrpb	99	96.186	ENSGACG00000003262	snrpb	99	96.186	Gasterosteus_aculeatus
ENSSFOG00015002870	snrpb	70	95.238	ENSGAGG00000001308	SNRPB	70	94.048	Gopherus_agassizii
ENSSFOG00015002870	snrpb	70	93.452	ENSGGOG00000016138	SNRPB	73	92.262	Gorilla_gorilla
ENSSFOG00015002870	snrpb	99	96.218	ENSHBUG00000008369	snrpb	99	96.218	Haplochromis_burtoni
ENSSFOG00015002870	snrpb	63	85.333	ENSHGLG00000016505	-	72	85.333	Heterocephalus_glaber_female
ENSSFOG00015002870	snrpb	70	93.452	ENSHGLG00000016241	-	73	92.262	Heterocephalus_glaber_female
ENSSFOG00015002870	snrpb	63	85.333	ENSHGLG00100004178	-	72	85.333	Heterocephalus_glaber_male
ENSSFOG00015002870	snrpb	70	93.452	ENSHGLG00100012877	-	73	92.262	Heterocephalus_glaber_male
ENSSFOG00015002870	snrpb	99	96.610	ENSHCOG00000014888	snrpb	99	96.610	Hippocampus_comes
ENSSFOG00015002870	snrpb	100	97.899	ENSIPUG00000024569	SNRPB	100	97.899	Ictalurus_punctatus
ENSSFOG00015002870	snrpb	80	76.064	ENSSTOG00000027821	-	62	94.118	Ictidomys_tridecemlineatus
ENSSFOG00015002870	snrpb	70	91.667	ENSSTOG00000033664	-	70	90.476	Ictidomys_tridecemlineatus
ENSSFOG00015002870	snrpb	70	93.452	ENSJJAG00000024170	Snrpb	73	92.262	Jaculus_jaculus
ENSSFOG00015002870	snrpb	72	98.246	ENSKMAG00000014494	snrpb	68	98.193	Kryptolebias_marmoratus
ENSSFOG00015002870	snrpb	99	97.034	ENSLBEG00000005678	snrpb	99	97.034	Labrus_bergylta
ENSSFOG00015002870	snrpb	76	93.443	ENSLACG00000011459	SNRPB	70	93.452	Latimeria_chalumnae
ENSSFOG00015002870	snrpb	100	98.319	ENSLOCG00000002687	snrpb	100	98.319	Lepisosteus_oculatus
ENSSFOG00015002870	snrpb	76	89.011	ENSLAFG00000017588	SNRPB	71	87.425	Loxodonta_africana
ENSSFOG00015002870	snrpb	70	93.452	ENSMFAG00000038756	SNRPB	73	92.262	Macaca_fascicularis
ENSSFOG00015002870	snrpb	70	93.452	ENSMMUG00000010050	SNRPB	73	92.262	Macaca_mulatta
ENSSFOG00015002870	snrpb	70	93.452	ENSMNEG00000027954	SNRPB	73	92.262	Macaca_nemestrina
ENSSFOG00015002870	snrpb	70	93.452	ENSMLEG00000022346	SNRPB	73	92.262	Mandrillus_leucophaeus
ENSSFOG00015002870	snrpb	99	96.203	ENSMAMG00000009294	snrpb	96	96.203	Mastacembelus_armatus
ENSSFOG00015002870	snrpb	99	96.218	ENSMZEG00005011856	snrpb	99	96.218	Maylandia_zebra
ENSSFOG00015002870	snrpb	76	93.443	ENSMICG00000016519	SNRPB	73	92.262	Microcebus_murinus
ENSSFOG00015002870	snrpb	76	83.425	ENSMICG00000015983	-	77	82.143	Microcebus_murinus
ENSSFOG00015002870	snrpb	59	77.698	ENSMOCG00000021362	-	58	77.698	Microtus_ochrogaster
ENSSFOG00015002870	snrpb	70	92.857	ENSMOCG00000002892	-	73	91.667	Microtus_ochrogaster
ENSSFOG00015002870	snrpb	95	96.903	ENSMMOG00000013226	snrpb	97	96.903	Mola_mola
ENSSFOG00015002870	snrpb	99	95.378	ENSMALG00000020839	snrpb	80	95.378	Monopterus_albus
ENSSFOG00015002870	snrpb	70	93.452	MGP_CAROLIEiJ_G0024293	Snrpb	74	100.000	Mus_caroli
ENSSFOG00015002870	snrpb	70	93.452	ENSMUSG00000027404	Snrpb	74	100.000	Mus_musculus
ENSSFOG00015002870	snrpb	70	93.452	MGP_PahariEiJ_G0025738	Snrpb	74	100.000	Mus_pahari
ENSSFOG00015002870	snrpb	70	93.452	MGP_SPRETEiJ_G0025213	Snrpb	73	100.000	Mus_spretus
ENSSFOG00015002870	snrpb	70	93.452	ENSMPUG00000009283	SNRPB	73	92.262	Mustela_putorius_furo
ENSSFOG00015002870	snrpb	76	90.164	ENSMLUG00000016951	SNRPB	69	88.690	Myotis_lucifugus
ENSSFOG00015002870	snrpb	70	93.452	ENSNGAG00000012051	Snrpb	73	92.262	Nannospalax_galili
ENSSFOG00015002870	snrpb	95	93.886	ENSNBRG00000006353	snrpb	87	93.886	Neolamprologus_brichardi
ENSSFOG00015002870	snrpb	70	93.452	ENSNLEG00000029067	SNRPB	70	92.262	Nomascus_leucogenys
ENSSFOG00015002870	snrpb	70	94.012	ENSMEUG00000015625	SNRPB	74	92.814	Notamacropus_eugenii
ENSSFOG00015002870	snrpb	70	88.095	ENSODEG00000016060	-	70	86.905	Octodon_degus
ENSSFOG00015002870	snrpb	70	93.452	ENSODEG00000004305	-	73	92.262	Octodon_degus
ENSSFOG00015002870	snrpb	99	96.218	ENSONIG00000000248	snrpb	99	96.218	Oreochromis_niloticus
ENSSFOG00015002870	snrpb	76	93.443	ENSOCUG00000014042	-	70	92.262	Oryctolagus_cuniculus
ENSSFOG00015002870	snrpb	75	87.151	ENSOCUG00000022423	-	86	88.095	Oryctolagus_cuniculus
ENSSFOG00015002870	snrpb	89	91.080	ENSOCUG00000028215	-	70	89.881	Oryctolagus_cuniculus
ENSSFOG00015002870	snrpb	89	65.258	ENSOCUG00000026813	-	63	66.216	Oryctolagus_cuniculus
ENSSFOG00015002870	snrpb	90	88.837	ENSOCUG00000021456	-	70	88.690	Oryctolagus_cuniculus
ENSSFOG00015002870	snrpb	76	96.089	ENSORLG00000021862	snrpb	69	97.590	Oryzias_latipes
ENSSFOG00015002870	snrpb	70	93.452	ENSOGAG00000016149	SNRPB	70	92.262	Otolemur_garnettii
ENSSFOG00015002870	snrpb	76	93.443	ENSOARG00000006740	SNRPB	73	92.262	Ovis_aries
ENSSFOG00015002870	snrpb	70	93.452	ENSPPAG00000036314	SNRPB	73	92.262	Pan_paniscus
ENSSFOG00015002870	snrpb	70	93.452	ENSPPRG00000003233	-	73	92.262	Panthera_pardus
ENSSFOG00015002870	snrpb	70	93.413	ENSPTIG00000007468	SNRPB	72	92.216	Panthera_tigris_altaica
ENSSFOG00015002870	snrpb	70	93.452	ENSPTRG00000013176	SNRPB	73	92.262	Pan_troglodytes
ENSSFOG00015002870	snrpb	70	93.452	ENSPANG00000020362	SNRPB	70	92.262	Papio_anubis
ENSSFOG00015002870	snrpb	100	97.899	ENSPKIG00000002865	snrpb	100	97.899	Paramormyrops_kingsleyae
ENSSFOG00015002870	snrpb	70	95.210	ENSPSIG00000014125	SNRPB	69	94.012	Pelodiscus_sinensis
ENSSFOG00015002870	snrpb	74	94.318	ENSPMGG00000016349	snrpb	69	95.031	Periophthalmus_magnuspinnatus
ENSSFOG00015002870	snrpb	70	93.452	ENSPEMG00000007948	Snrpb	73	92.262	Peromyscus_maniculatus_bairdii
ENSSFOG00015002870	snrpb	70	92.814	ENSPCIG00000004694	SNRPB	69	91.617	Phascolarctos_cinereus
ENSSFOG00015002870	snrpb	88	79.904	ENSPFOG00000011802	snrpb	63	97.987	Poecilia_formosa
ENSSFOG00015002870	snrpb	70	93.452	ENSPPYG00000010841	SNRPB	73	92.262	Pongo_abelii
ENSSFOG00015002870	snrpb	70	93.452	ENSPCOG00000013686	SNRPB	73	92.262	Propithecus_coquereli
ENSSFOG00015002870	snrpb	70	92.262	ENSPVAG00000017013	SNRPB	59	91.071	Pteropus_vampyrus
ENSSFOG00015002870	snrpb	99	96.218	ENSPNYG00000014788	snrpb	99	96.218	Pundamilia_nyererei
ENSSFOG00015002870	snrpb	100	97.479	ENSPNAG00000016126	snrpb	100	97.479	Pygocentrus_nattereri
ENSSFOG00015002870	snrpb	70	93.452	ENSRNOG00000006961	Snrpb	73	100.000	Rattus_norvegicus
ENSSFOG00015002870	snrpb	70	93.452	ENSRBIG00000040505	SNRPB	73	92.262	Rhinopithecus_bieti
ENSSFOG00015002870	snrpb	70	93.452	ENSRROG00000036094	SNRPB	73	92.262	Rhinopithecus_roxellana
ENSSFOG00015002870	snrpb	70	93.452	ENSSBOG00000027310	SNRPB	73	92.262	Saimiri_boliviensis_boliviensis
ENSSFOG00015002870	snrpb	70	94.048	ENSSHAG00000010394	SNRPB	70	92.857	Sarcophilus_harrisii
ENSSFOG00015002870	snrpb	99	96.610	ENSSMAG00000006766	snrpb	99	96.610	Scophthalmus_maximus
ENSSFOG00015002870	snrpb	99	96.218	ENSSDUG00000018539	snrpb	99	96.218	Seriola_dumerili
ENSSFOG00015002870	snrpb	99	96.218	ENSSLDG00000022391	snrpb	99	96.218	Seriola_lalandi_dorsalis
ENSSFOG00015002870	snrpb	72	77.326	ENSSARG00000003084	SNRPB	74	77.326	Sorex_araneus
ENSSFOG00015002870	snrpb	70	95.210	ENSSPUG00000015659	SNRPB	70	94.012	Sphenodon_punctatus
ENSSFOG00015002870	snrpb	99	96.218	ENSSPAG00000021992	snrpb	99	96.218	Stegastes_partitus
ENSSFOG00015002870	snrpb	88	72.986	ENSSSCG00000011966	-	77	69.399	Sus_scrofa
ENSSFOG00015002870	snrpb	76	93.443	ENSSSCG00000040857	-	73	92.262	Sus_scrofa
ENSSFOG00015002870	snrpb	74	80.226	ENSTGUG00000005684	SNRPB	59	96.429	Taeniopygia_guttata
ENSSFOG00015002870	snrpb	95	96.476	ENSTRUG00000023094	snrpb	99	96.476	Takifugu_rubripes
ENSSFOG00015002870	snrpb	99	96.610	ENSTNIG00000002991	snrpb	99	96.610	Tetraodon_nigroviridis
ENSSFOG00015002870	snrpb	70	93.452	ENSUAMG00000005984	-	80	92.262	Ursus_americanus
ENSSFOG00015002870	snrpb	58	94.161	ENSUMAG00000002123	-	63	94.161	Ursus_maritimus
ENSSFOG00015002870	snrpb	70	92.857	ENSVVUG00000025654	-	70	91.667	Vulpes_vulpes
ENSSFOG00015002870	snrpb	100	72.803	ENSVVUG00000010086	-	71	75.000	Vulpes_vulpes
ENSSFOG00015002870	snrpb	63	97.333	ENSXETG00000027266	snrpb	63	97.333	Xenopus_tropicalis
ENSSFOG00015002870	snrpb	90	67.593	ENSXMAG00000028767	snrpb	58	97.778	Xiphophorus_maculatus