EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015003117 (Gene tree)
Gene ID: 108922459
Gene Symbol: gfm1
Alias: fc96f12|wu:fc96f12|zgc:154041
Full Name: G elongation factor mitochondrial 1
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 12642 bases
Position: chrKV410815.1:1041170-1053811
Accession: 108922459
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015004835	GTP_EFTU	PF00009.27	2.3e-62	1	1
ENSSFOP00015004847	GTP_EFTU	PF00009.27	2.4e-62	1	1
ENSSFOP00015004835	GTP_EFTU_D2	PF03144.25	5.9e-14	1	1
ENSSFOP00015004847	GTP_EFTU_D2	PF03144.25	6.1e-14	1	1
ENSSFOP00015004847	EFG_IV	PF03764.18	7.8e-35	1	1
ENSSFOP00015004835	EFG_IV	PF03764.18	1.5e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015004925	-	4773	XM_018732595	ENSSFOP00015004847	749 (aa)	XP_018588111	A0A1W4YID2
ENSSFOT00015004912	-	2187	-	ENSSFOP00015004835	728 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015003117's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015003117's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015003117	gfm1	69	48.438	ENSSFOG00015018454	eef2l2	70	48.438
ENSSFOG00015003117	gfm1	74	37.584	ENSSFOG00015004255	-	70	37.584
ENSSFOG00015003117	gfm1	97	34.367	ENSSFOG00015016059	gfm2	98	35.095

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015003117	gfm1	99	80.907	ENSG00000168827	GFM1	100	91.667	Homo_sapiens
ENSSFOG00015003117	gfm1	92	83.019	ENSAPOG00000016489	gfm1	98	83.019	Acanthochromis_polyacanthus
ENSSFOG00015003117	gfm1	99	80.769	ENSAMEG00000013542	GFM1	96	80.769	Ailuropoda_melanoleuca
ENSSFOG00015003117	gfm1	99	79.420	ENSACIG00000014465	gfm1	94	79.972	Amphilophus_citrinellus
ENSSFOG00015003117	gfm1	99	83.148	ENSAOCG00000006023	gfm1	99	82.796	Amphiprion_ocellaris
ENSSFOG00015003117	gfm1	99	82.869	ENSAPEG00000024499	gfm1	99	82.869	Amphiprion_percula
ENSSFOG00015003117	gfm1	100	82.777	ENSATEG00000013789	gfm1	100	82.777	Anabas_testudineus
ENSSFOG00015003117	gfm1	99	81.077	ENSAPLG00000005022	GFM1	99	81.215	Anas_platyrhynchos
ENSSFOG00015003117	gfm1	99	79.862	ENSACAG00000006829	GFM1	99	79.512	Anolis_carolinensis
ENSSFOG00015003117	gfm1	99	80.632	ENSANAG00000035983	GFM1	96	80.972	Aotus_nancymaae
ENSSFOG00015003117	gfm1	100	83.578	ENSACLG00000016586	gfm1	100	83.578	Astatotilapia_calliptera
ENSSFOG00015003117	gfm1	99	84.509	ENSAMXG00000013435	gfm1	97	84.371	Astyanax_mexicanus
ENSSFOG00015003117	gfm1	99	80.690	ENSBTAG00000027795	GFM1	96	80.690	Bos_taurus
ENSSFOG00015003117	gfm1	96	56.205	WBGene00009246	gfm-1	95	56.276	Caenorhabditis_elegans
ENSSFOG00015003117	gfm1	99	80.907	ENSCJAG00000000363	GFM1	96	81.250	Callithrix_jacchus
ENSSFOG00015003117	gfm1	99	81.405	ENSCAFG00000009006	GFM1	100	81.657	Canis_familiaris
ENSSFOG00015003117	gfm1	99	81.405	ENSCAFG00020005878	GFM1	99	81.405	Canis_lupus_dingo
ENSSFOG00015003117	gfm1	99	80.690	ENSCHIG00000015220	GFM1	96	80.690	Capra_hircus
ENSSFOG00015003117	gfm1	99	80.632	ENSTSYG00000002013	GFM1	100	78.752	Carlito_syrichta
ENSSFOG00015003117	gfm1	100	70.300	ENSCAPG00000005699	GFM1	98	70.300	Cavia_aperea
ENSSFOG00015003117	gfm1	99	80.632	ENSCPOG00000001194	GFM1	100	78.382	Cavia_porcellus
ENSSFOG00015003117	gfm1	99	80.357	ENSCCAG00000025561	GFM1	100	78.590	Cebus_capucinus
ENSSFOG00015003117	gfm1	99	80.632	ENSCATG00000037622	GFM1	100	78.856	Cercocebus_atys
ENSSFOG00015003117	gfm1	99	80.495	ENSCLAG00000002503	GFM1	96	80.495	Chinchilla_lanigera
ENSSFOG00015003117	gfm1	99	80.769	ENSCSAG00000012162	GFM1	100	78.989	Chlorocebus_sabaeus
ENSSFOG00015003117	gfm1	99	72.527	ENSCHOG00000004867	GFM1	100	70.955	Choloepus_hoffmanni
ENSSFOG00015003117	gfm1	99	80.636	ENSCPBG00000018367	GFM1	99	79.439	Chrysemys_picta_bellii
ENSSFOG00015003117	gfm1	99	57.745	ENSCING00000011960	-	95	57.745	Ciona_intestinalis
ENSSFOG00015003117	gfm1	97	59.944	ENSCSAVG00000008514	-	99	59.544	Ciona_savignyi
ENSSFOG00015003117	gfm1	99	80.632	ENSCANG00000031714	GFM1	100	78.856	Colobus_angolensis_palliatus
ENSSFOG00015003117	gfm1	99	81.241	ENSCGRG00001022095	GFM1	100	79.627	Cricetulus_griseus_chok1gshd
ENSSFOG00015003117	gfm1	99	81.241	ENSCGRG00000012043	GFM1	100	79.627	Cricetulus_griseus_crigri
ENSSFOG00015003117	gfm1	99	79.115	ENSCSEG00000017088	gfm1	99	79.115	Cynoglossus_semilaevis
ENSSFOG00015003117	gfm1	99	84.680	ENSCVAG00000004126	gfm1	99	84.543	Cyprinodon_variegatus
ENSSFOG00015003117	gfm1	100	82.911	ENSDARG00000063624	gfm1	100	82.911	Danio_rerio
ENSSFOG00015003117	gfm1	57	80.583	ENSDNOG00000016385	-	100	80.685	Dasypus_novemcinctus
ENSSFOG00015003117	gfm1	99	79.808	ENSDORG00000014165	Gfm1	100	77.955	Dipodomys_ordii
ENSSFOG00015003117	gfm1	98	67.978	FBgn0263133	mEFG1	99	65.909	Drosophila_melanogaster
ENSSFOG00015003117	gfm1	99	73.333	ENSETEG00000019197	GFM1	100	72.222	Echinops_telfairi
ENSSFOG00015003117	gfm1	93	65.436	ENSEBUG00000012794	gfm1	99	65.727	Eptatretus_burgeri
ENSSFOG00015003117	gfm1	91	72.393	ENSEEUG00000000429	GFM1	91	72.393	Erinaceus_europaeus
ENSSFOG00015003117	gfm1	100	82.911	ENSELUG00000014728	gfm1	100	82.911	Esox_lucius
ENSSFOG00015003117	gfm1	99	80.907	ENSFCAG00000013291	GFM1	96	80.907	Felis_catus
ENSSFOG00015003117	gfm1	93	81.268	ENSFALG00000007619	GFM1	100	81.333	Ficedula_albicollis
ENSSFOG00015003117	gfm1	99	80.194	ENSFDAG00000016559	GFM1	100	77.851	Fukomys_damarensis
ENSSFOG00015003117	gfm1	100	84.112	ENSFHEG00000006091	gfm1	100	84.112	Fundulus_heteroclitus
ENSSFOG00015003117	gfm1	99	81.843	ENSGMOG00000010161	gfm1	100	82.393	Gadus_morhua
ENSSFOG00015003117	gfm1	99	80.636	ENSGALG00000009634	GFM1	99	79.783	Gallus_gallus
ENSSFOG00015003117	gfm1	100	83.578	ENSGAFG00000012527	gfm1	100	83.578	Gambusia_affinis
ENSSFOG00015003117	gfm1	99	84.094	ENSGACG00000009864	gfm1	99	83.712	Gasterosteus_aculeatus
ENSSFOG00015003117	gfm1	99	80.907	ENSGGOG00000003085	GFM1	100	78.989	Gorilla_gorilla
ENSSFOG00015003117	gfm1	100	83.979	ENSHBUG00000002120	gfm1	100	83.979	Haplochromis_burtoni
ENSSFOG00015003117	gfm1	99	79.670	ENSHGLG00000016855	GFM1	96	79.670	Heterocephalus_glaber_female
ENSSFOG00015003117	gfm1	99	79.670	ENSHGLG00100013049	GFM1	96	79.670	Heterocephalus_glaber_male
ENSSFOG00015003117	gfm1	98	84.218	ENSHCOG00000007638	gfm1	99	83.779	Hippocampus_comes
ENSSFOG00015003117	gfm1	99	84.743	ENSIPUG00000005873	gfm1	100	83.578	Ictalurus_punctatus
ENSSFOG00015003117	gfm1	99	79.670	ENSSTOG00000010150	GFM1	98	79.670	Ictidomys_tridecemlineatus
ENSSFOG00015003117	gfm1	99	80.000	ENSJJAG00000016447	Gfm1	100	77.763	Jaculus_jaculus
ENSSFOG00015003117	gfm1	100	82.644	ENSKMAG00000020768	gfm1	100	82.644	Kryptolebias_marmoratus
ENSSFOG00015003117	gfm1	97	83.949	ENSLBEG00000021315	gfm1	100	84.165	Labrus_bergylta
ENSSFOG00015003117	gfm1	99	82.434	ENSLACG00000012295	GFM1	100	80.774	Latimeria_chalumnae
ENSSFOG00015003117	gfm1	99	80.055	ENSLOCG00000003778	gfm1	100	80.464	Lepisosteus_oculatus
ENSSFOG00015003117	gfm1	99	78.984	ENSLAFG00000010945	GFM1	99	78.194	Loxodonta_africana
ENSSFOG00015003117	gfm1	99	80.907	ENSMFAG00000035731	GFM1	96	81.276	Macaca_fascicularis
ENSSFOG00015003117	gfm1	99	80.907	ENSMMUG00000004961	GFM1	96	81.276	Macaca_mulatta
ENSSFOG00015003117	gfm1	99	80.632	ENSMNEG00000033245	GFM1	100	78.856	Macaca_nemestrina
ENSSFOG00015003117	gfm1	99	78.984	ENSMLEG00000030908	GFM1	100	78.715	Mandrillus_leucophaeus
ENSSFOG00015003117	gfm1	100	84.379	ENSMAMG00000011760	gfm1	100	84.379	Mastacembelus_armatus
ENSSFOG00015003117	gfm1	100	83.712	ENSMZEG00005016639	gfm1	100	83.712	Maylandia_zebra
ENSSFOG00015003117	gfm1	99	80.636	ENSMGAG00000010641	GFM1	97	80.636	Meleagris_gallopavo
ENSSFOG00015003117	gfm1	99	81.103	ENSMAUG00000000611	Gfm1	100	79.228	Mesocricetus_auratus
ENSSFOG00015003117	gfm1	99	81.319	ENSMICG00000049086	GFM1	96	81.319	Microcebus_murinus
ENSSFOG00015003117	gfm1	99	80.138	ENSMOCG00000000465	Gfm1	100	78.296	Microtus_ochrogaster
ENSSFOG00015003117	gfm1	99	83.956	ENSMMOG00000012538	gfm1	98	84.232	Mola_mola
ENSSFOG00015003117	gfm1	99	80.193	ENSMODG00000015673	GFM1	100	78.371	Monodelphis_domestica
ENSSFOG00015003117	gfm1	99	83.611	ENSMALG00000012508	gfm1	95	84.240	Monopterus_albus
ENSSFOG00015003117	gfm1	99	80.552	MGP_CAROLIEiJ_G0025052	Gfm1	100	78.429	Mus_caroli
ENSSFOG00015003117	gfm1	99	80.690	ENSMUSG00000027774	Gfm1	100	78.562	Mus_musculus
ENSSFOG00015003117	gfm1	99	81.241	MGP_PahariEiJ_G0026495	Gfm1	100	79.095	Mus_pahari
ENSSFOG00015003117	gfm1	99	80.690	MGP_SPRETEiJ_G0025994	Gfm1	100	78.562	Mus_spretus
ENSSFOG00015003117	gfm1	99	81.044	ENSMPUG00000002859	GFM1	96	81.044	Mustela_putorius_furo
ENSSFOG00015003117	gfm1	99	81.593	ENSMLUG00000000452	GFM1	96	81.593	Myotis_lucifugus
ENSSFOG00015003117	gfm1	99	79.890	ENSNGAG00000012375	Gfm1	100	78.000	Nannospalax_galili
ENSSFOG00015003117	gfm1	99	84.371	ENSNBRG00000004631	gfm1	99	84.499	Neolamprologus_brichardi
ENSSFOG00015003117	gfm1	99	80.769	ENSNLEG00000004176	GFM1	100	78.856	Nomascus_leucogenys
ENSSFOG00015003117	gfm1	95	72.093	ENSMEUG00000007784	GFM1	100	72.093	Notamacropus_eugenii
ENSSFOG00015003117	gfm1	99	80.495	ENSOPRG00000009860	GFM1	98	80.495	Ochotona_princeps
ENSSFOG00015003117	gfm1	99	80.082	ENSODEG00000004316	GFM1	96	80.082	Octodon_degus
ENSSFOG00015003117	gfm1	100	84.112	ENSONIG00000003772	gfm1	100	84.112	Oreochromis_niloticus
ENSSFOG00015003117	gfm1	99	81.319	ENSOCUG00000013561	GFM1	99	79.652	Oryctolagus_cuniculus
ENSSFOG00015003117	gfm1	98	84.951	ENSORLG00000006487	gfm1	100	85.311	Oryzias_latipes
ENSSFOG00015003117	gfm1	100	83.445	ENSORLG00020003362	gfm1	100	83.445	Oryzias_latipes_hni
ENSSFOG00015003117	gfm1	100	83.445	ENSORLG00015005829	gfm1	100	83.445	Oryzias_latipes_hsok
ENSSFOG00015003117	gfm1	100	82.777	ENSOMEG00000012894	gfm1	100	82.777	Oryzias_melastigma
ENSSFOG00015003117	gfm1	99	80.632	ENSOGAG00000008298	GFM1	96	80.632	Otolemur_garnettii
ENSSFOG00015003117	gfm1	99	79.835	ENSOARG00000002409	GFM1	99	80.305	Ovis_aries
ENSSFOG00015003117	gfm1	99	80.907	ENSPPAG00000033881	GFM1	100	78.989	Pan_paniscus
ENSSFOG00015003117	gfm1	99	80.907	ENSPPRG00000009281	GFM1	96	80.907	Panthera_pardus
ENSSFOG00015003117	gfm1	99	80.769	ENSPTIG00000012416	GFM1	96	80.769	Panthera_tigris_altaica
ENSSFOG00015003117	gfm1	99	80.907	ENSPTRG00000015570	GFM1	100	78.989	Pan_troglodytes
ENSSFOG00015003117	gfm1	99	80.769	ENSPANG00000016512	GFM1	100	78.989	Papio_anubis
ENSSFOG00015003117	gfm1	100	87.717	ENSPKIG00000004876	gfm1	100	87.717	Paramormyrops_kingsleyae
ENSSFOG00015003117	gfm1	99	81.328	ENSPSIG00000012567	GFM1	99	80.107	Pelodiscus_sinensis
ENSSFOG00015003117	gfm1	99	81.743	ENSPMGG00000014068	gfm1	100	81.680	Periophthalmus_magnuspinnatus
ENSSFOG00015003117	gfm1	99	80.966	ENSPEMG00000008942	Gfm1	100	79.095	Peromyscus_maniculatus_bairdii
ENSSFOG00015003117	gfm1	88	77.223	ENSPCIG00000020195	GFM1	98	77.480	Phascolarctos_cinereus
ENSSFOG00015003117	gfm1	100	84.379	ENSPFOG00000011022	gfm1	100	84.379	Poecilia_formosa
ENSSFOG00015003117	gfm1	99	84.786	ENSPLAG00000019585	gfm1	100	83.590	Poecilia_latipinna
ENSSFOG00015003117	gfm1	100	84.513	ENSPMEG00000012376	gfm1	100	84.513	Poecilia_mexicana
ENSSFOG00015003117	gfm1	100	84.246	ENSPREG00000001332	gfm1	95	84.246	Poecilia_reticulata
ENSSFOG00015003117	gfm1	99	80.769	ENSPPYG00000014244	GFM1	100	78.856	Pongo_abelii
ENSSFOG00015003117	gfm1	97	80.170	ENSPCAG00000008934	GFM1	100	80.228	Procavia_capensis
ENSSFOG00015003117	gfm1	99	80.907	ENSPCOG00000022259	GFM1	100	79.205	Propithecus_coquereli
ENSSFOG00015003117	gfm1	99	80.357	ENSPVAG00000013605	GFM1	96	80.357	Pteropus_vampyrus
ENSSFOG00015003117	gfm1	100	83.445	ENSPNYG00000006037	gfm1	100	83.445	Pundamilia_nyererei
ENSSFOG00015003117	gfm1	99	85.615	ENSPNAG00000001237	gfm1	100	84.112	Pygocentrus_nattereri
ENSSFOG00015003117	gfm1	99	80.690	ENSRNOG00000012873	Gfm1	100	79.095	Rattus_norvegicus
ENSSFOG00015003117	gfm1	99	80.632	ENSRBIG00000031363	GFM1	100	78.856	Rhinopithecus_bieti
ENSSFOG00015003117	gfm1	99	80.769	ENSRROG00000031081	GFM1	100	78.989	Rhinopithecus_roxellana
ENSSFOG00015003117	gfm1	95	57.286	YLR069C	-	92	56.267	Saccharomyces_cerevisiae
ENSSFOG00015003117	gfm1	99	80.632	ENSSBOG00000023252	GFM1	96	80.972	Saimiri_boliviensis_boliviensis
ENSSFOG00015003117	gfm1	99	81.018	ENSSHAG00000017772	GFM1	97	81.018	Sarcophilus_harrisii
ENSSFOG00015003117	gfm1	100	82.243	ENSSMAG00000013221	gfm1	100	82.243	Scophthalmus_maximus
ENSSFOG00015003117	gfm1	100	83.979	ENSSDUG00000018665	gfm1	100	83.979	Seriola_dumerili
ENSSFOG00015003117	gfm1	100	83.845	ENSSLDG00000020606	gfm1	100	83.845	Seriola_lalandi_dorsalis
ENSSFOG00015003117	gfm1	99	78.363	ENSSPUG00000018686	GFM1	99	78.202	Sphenodon_punctatus
ENSSFOG00015003117	gfm1	100	84.112	ENSSPAG00000008800	gfm1	100	84.112	Stegastes_partitus
ENSSFOG00015003117	gfm1	99	81.655	ENSSSCG00000025651	GFM1	96	81.655	Sus_scrofa
ENSSFOG00015003117	gfm1	100	81.842	ENSTRUG00000009244	gfm1	100	81.842	Takifugu_rubripes
ENSSFOG00015003117	gfm1	100	83.044	ENSTNIG00000007729	gfm1	100	83.044	Tetraodon_nigroviridis
ENSSFOG00015003117	gfm1	93	72.714	ENSTBEG00000017404	GFM1	89	73.037	Tupaia_belangeri
ENSSFOG00015003117	gfm1	99	80.274	ENSTTRG00000001735	GFM1	96	80.274	Tursiops_truncatus
ENSSFOG00015003117	gfm1	99	80.907	ENSUAMG00000026381	GFM1	96	80.907	Ursus_americanus
ENSSFOG00015003117	gfm1	99	80.907	ENSUMAG00000011268	GFM1	96	80.907	Ursus_maritimus
ENSSFOG00015003117	gfm1	99	77.304	ENSVPAG00000009444	GFM1	96	77.304	Vicugna_pacos
ENSSFOG00015003117	gfm1	99	81.641	ENSVVUG00000020091	GFM1	100	81.361	Vulpes_vulpes
ENSSFOG00015003117	gfm1	99	82.240	ENSXETG00000032551	GFM1	100	81.117	Xenopus_tropicalis
ENSSFOG00015003117	gfm1	52	85.224	ENSXCOG00000012590	gfm1	89	83.805	Xiphophorus_couchianus
ENSSFOG00015003117	gfm1	100	84.246	ENSXMAG00000000261	gfm1	100	84.246	Xiphophorus_maculatus