EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015003923 (Gene tree)
Gene ID: -
Gene Symbol: alyref (1 of many)
Alias: tho4|thoc4|zgc:171753
Full Name: THO complex subunit 4-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 5536 bases
Position: chrKV411197.1:5921653-5927188
Accession: 108939760
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015006057	RRM_1	PF00076.22	1.7e-13	1	1
ENSSFOP00015006048	RRM_1	PF00076.22	2.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015006145	-	3345	XM_018761360	ENSSFOP00015006048	276 (aa)	XP_018616876	-
ENSSFOT00015006154	-	2433	-	ENSSFOP00015006057	256 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015003923's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015003923's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015003923	alyref	72	80.423	ENSSFOG00015003678	alyref	86	79.365

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015003923	alyref	73	61.972	ENSAPOG00000000183	-	84	56.637	Acanthochromis_polyacanthus
ENSSFOG00015003923	alyref	72	54.222	ENSACIG00000020351	-	83	54.626	Amphilophus_citrinellus
ENSSFOG00015003923	alyref	72	69.048	ENSACIG00000006351	alyref	76	75.943	Amphilophus_citrinellus
ENSSFOG00015003923	alyref	73	62.679	ENSAOCG00000019305	-	84	63.158	Amphiprion_ocellaris
ENSSFOG00015003923	alyref	73	72.770	ENSAOCG00000014012	alyref	78	80.282	Amphiprion_ocellaris
ENSSFOG00015003923	alyref	73	72.770	ENSAPEG00000014603	alyref	78	80.282	Amphiprion_percula
ENSSFOG00015003923	alyref	73	62.679	ENSAPEG00000013527	-	84	63.158	Amphiprion_percula
ENSSFOG00015003923	alyref	75	61.927	ENSATEG00000000382	-	82	61.033	Anabas_testudineus
ENSSFOG00015003923	alyref	73	71.889	ENSATEG00000004307	alyref	78	78.341	Anabas_testudineus
ENSSFOG00015003923	alyref	51	74.815	ENSAPLG00000014745	-	100	75.362	Anas_platyrhynchos
ENSSFOG00015003923	alyref	72	59.633	ENSACLG00000010184	-	83	60.000	Astatotilapia_calliptera
ENSSFOG00015003923	alyref	73	70.561	ENSACLG00000008432	alyref	78	77.103	Astatotilapia_calliptera
ENSSFOG00015003923	alyref	73	79.070	ENSAMXG00000007359	alyref	77	81.860	Astyanax_mexicanus
ENSSFOG00015003923	alyref	68	48.936	ENSCING00000013568	-	78	47.596	Ciona_intestinalis
ENSSFOG00015003923	alyref	69	49.215	ENSCSAVG00000003324	-	77	47.143	Ciona_savignyi
ENSSFOG00015003923	alyref	72	72.170	ENSCSEG00000017800	alyref	78	79.245	Cynoglossus_semilaevis
ENSSFOG00015003923	alyref	73	76.667	ENSCVAG00000014869	alyref	78	79.048	Cyprinodon_variegatus
ENSSFOG00015003923	alyref	71	55.135	ENSCVAG00000007789	-	76	57.292	Cyprinodon_variegatus
ENSSFOG00015003923	alyref	73	79.812	ENSDARG00000077732	alyref	76	82.629	Danio_rerio
ENSSFOG00015003923	alyref	71	48.515	FBgn0010774	Ref1	72	45.729	Drosophila_melanogaster
ENSSFOG00015003923	alyref	72	51.980	ENSEBUG00000008253	alyref	73	50.971	Eptatretus_burgeri
ENSSFOG00015003923	alyref	71	46.875	ENSEBUG00000006305	alyref	85	43.137	Eptatretus_burgeri
ENSSFOG00015003923	alyref	73	68.950	ENSELUG00000008849	-	85	70.320	Esox_lucius
ENSSFOG00015003923	alyref	73	80.676	ENSELUG00000017178	alyref	77	78.744	Esox_lucius
ENSSFOG00015003923	alyref	60	79.747	ENSFALG00000011923	-	96	77.922	Ficedula_albicollis
ENSSFOG00015003923	alyref	72	55.392	ENSFHEG00000004698	-	75	57.068	Fundulus_heteroclitus
ENSSFOG00015003923	alyref	72	75.243	ENSFHEG00000019426	alyref	91	69.262	Fundulus_heteroclitus
ENSSFOG00015003923	alyref	69	60.209	ENSGMOG00000013122	-	100	60.209	Gadus_morhua
ENSSFOG00015003923	alyref	73	74.272	ENSGMOG00000009882	alyref	78	70.388	Gadus_morhua
ENSSFOG00015003923	alyref	73	78.365	ENSGAFG00000006014	alyref	76	79.227	Gambusia_affinis
ENSSFOG00015003923	alyref	71	56.522	ENSGAFG00000007573	-	75	56.316	Gambusia_affinis
ENSSFOG00015003923	alyref	72	59.091	ENSHBUG00000001454	-	83	59.459	Haplochromis_burtoni
ENSSFOG00015003923	alyref	73	70.561	ENSHBUG00000020196	alyref	78	77.103	Haplochromis_burtoni
ENSSFOG00015003923	alyref	73	54.630	ENSHCOG00000012825	-	74	55.897	Hippocampus_comes
ENSSFOG00015003923	alyref	73	83.981	ENSIPUG00000009469	alyref	77	83.962	Ictalurus_punctatus
ENSSFOG00015003923	alyref	75	71.875	ENSSTOG00000016570	-	98	72.396	Ictidomys_tridecemlineatus
ENSSFOG00015003923	alyref	71	80.311	ENSKMAG00000008912	alyref	78	79.343	Kryptolebias_marmoratus
ENSSFOG00015003923	alyref	73	59.804	ENSKMAG00000006462	-	81	59.804	Kryptolebias_marmoratus
ENSSFOG00015003923	alyref	70	54.450	ENSLBEG00000012930	-	82	55.288	Labrus_bergylta
ENSSFOG00015003923	alyref	73	71.090	ENSLBEG00000023118	alyref	75	75.355	Labrus_bergylta
ENSSFOG00015003923	alyref	71	53.333	ENSLBEG00000005387	-	85	54.978	Labrus_bergylta
ENSSFOG00015003923	alyref	73	75.229	ENSLOCG00000013879	alyref	89	75.814	Lepisosteus_oculatus
ENSSFOG00015003923	alyref	73	72.430	ENSMAMG00000003034	alyref	78	77.674	Mastacembelus_armatus
ENSSFOG00015003923	alyref	73	57.746	ENSMAMG00000005464	-	83	58.685	Mastacembelus_armatus
ENSSFOG00015003923	alyref	72	59.174	ENSMZEG00005012096	-	83	59.545	Maylandia_zebra
ENSSFOG00015003923	alyref	73	70.561	ENSMZEG00005008639	alyref	78	77.103	Maylandia_zebra
ENSSFOG00015003923	alyref	72	56.098	ENSMMOG00000007032	-	86	53.241	Mola_mola
ENSSFOG00015003923	alyref	73	76.190	ENSMMOG00000012458	alyref	75	80.952	Mola_mola
ENSSFOG00015003923	alyref	75	58.772	ENSMALG00000006054	-	84	57.466	Monopterus_albus
ENSSFOG00015003923	alyref	75	67.442	ENSMLUG00000014372	-	76	66.029	Myotis_lucifugus
ENSSFOG00015003923	alyref	72	59.535	ENSMLUG00000022467	-	74	57.416	Myotis_lucifugus
ENSSFOG00015003923	alyref	72	60.577	ENSMLUG00000030671	-	72	58.252	Myotis_lucifugus
ENSSFOG00015003923	alyref	72	59.903	ENSMLUG00000022178	-	74	60.396	Myotis_lucifugus
ENSSFOG00015003923	alyref	71	72.131	ENSMLUG00000004098	-	80	65.258	Myotis_lucifugus
ENSSFOG00015003923	alyref	71	59.048	ENSMLUG00000028605	-	72	60.697	Myotis_lucifugus
ENSSFOG00015003923	alyref	71	67.213	ENSMLUG00000006521	-	79	62.911	Myotis_lucifugus
ENSSFOG00015003923	alyref	72	58.904	ENSMLUG00000009247	-	77	59.615	Myotis_lucifugus
ENSSFOG00015003923	alyref	75	79.487	ENSNGAG00000022014	-	79	81.421	Nannospalax_galili
ENSSFOG00015003923	alyref	73	70.561	ENSNBRG00000001747	alyref	77	77.103	Neolamprologus_brichardi
ENSSFOG00015003923	alyref	72	60.185	ENSNBRG00000017460	-	83	60.550	Neolamprologus_brichardi
ENSSFOG00015003923	alyref	72	61.033	ENSONIG00000003296	-	82	62.326	Oreochromis_niloticus
ENSSFOG00015003923	alyref	73	73.272	ENSONIG00000019434	alyref	78	78.802	Oreochromis_niloticus
ENSSFOG00015003923	alyref	73	73.333	ENSORLG00020011942	alyref	77	79.426	Oryzias_latipes_hni
ENSSFOG00015003923	alyref	75	53.571	ENSORLG00020015673	-	83	53.846	Oryzias_latipes_hni
ENSSFOG00015003923	alyref	73	73.333	ENSORLG00015022664	alyref	78	79.426	Oryzias_latipes_hsok
ENSSFOG00015003923	alyref	75	54.018	ENSORLG00015015143	-	83	55.238	Oryzias_latipes_hsok
ENSSFOG00015003923	alyref	74	56.542	ENSOMEG00000007158	-	81	55.122	Oryzias_melastigma
ENSSFOG00015003923	alyref	73	75.714	ENSOMEG00000019176	alyref	77	78.947	Oryzias_melastigma
ENSSFOG00015003923	alyref	71	80.214	ENSPPAG00000036403	-	73	73.604	Pan_paniscus
ENSSFOG00015003923	alyref	72	84.951	ENSPKIG00000006233	-	65	80.193	Paramormyrops_kingsleyae
ENSSFOG00015003923	alyref	73	81.281	ENSPKIG00000007070	alyref	76	78.818	Paramormyrops_kingsleyae
ENSSFOG00015003923	alyref	72	73.077	ENSPMGG00000016600	alyref	71	76.303	Periophthalmus_magnuspinnatus
ENSSFOG00015003923	alyref	50	57.143	ENSPMGG00000012994	-	68	61.345	Periophthalmus_magnuspinnatus
ENSSFOG00015003923	alyref	80	74.641	ENSPEMG00000016628	-	92	75.120	Peromyscus_maniculatus_bairdii
ENSSFOG00015003923	alyref	71	54.301	ENSPFOG00000017094	-	75	56.021	Poecilia_formosa
ENSSFOG00015003923	alyref	73	75.120	ENSPFOG00000022825	alyref	75	76.442	Poecilia_formosa
ENSSFOG00015003923	alyref	71	54.301	ENSPLAG00000014380	-	75	56.021	Poecilia_latipinna
ENSSFOG00015003923	alyref	73	75.120	ENSPLAG00000006948	alyref	76	76.442	Poecilia_latipinna
ENSSFOG00015003923	alyref	73	75.120	ENSPMEG00000003547	alyref	76	76.442	Poecilia_mexicana
ENSSFOG00015003923	alyref	71	54.301	ENSPMEG00000023039	-	75	56.021	Poecilia_mexicana
ENSSFOG00015003923	alyref	71	57.377	ENSPREG00000003649	-	76	58.201	Poecilia_reticulata
ENSSFOG00015003923	alyref	73	74.163	ENSPREG00000015795	alyref	89	65.975	Poecilia_reticulata
ENSSFOG00015003923	alyref	73	70.561	ENSPNYG00000017498	alyref	78	77.103	Pundamilia_nyererei
ENSSFOG00015003923	alyref	71	56.808	ENSPNYG00000002879	-	81	57.209	Pundamilia_nyererei
ENSSFOG00015003923	alyref	73	83.254	ENSPNAG00000002531	alyref	77	84.689	Pygocentrus_nattereri
ENSSFOG00015003923	alyref	76	77.561	ENSSBOG00000030924	-	93	73.659	Saimiri_boliviensis_boliviensis
ENSSFOG00015003923	alyref	73	65.686	ENSSHAG00000000609	-	87	61.244	Sarcophilus_harrisii
ENSSFOG00015003923	alyref	73	65.196	ENSSHAG00000012866	-	78	62.687	Sarcophilus_harrisii
ENSSFOG00015003923	alyref	73	72.038	ENSSMAG00000009283	alyref	77	79.621	Scophthalmus_maximus
ENSSFOG00015003923	alyref	71	57.000	ENSSMAG00000011169	-	84	57.919	Scophthalmus_maximus
ENSSFOG00015003923	alyref	73	72.770	ENSSDUG00000016158	alyref	94	65.891	Seriola_dumerili
ENSSFOG00015003923	alyref	73	72.430	ENSSLDG00000017803	alyref	95	64.865	Seriola_lalandi_dorsalis
ENSSFOG00015003923	alyref	72	61.137	ENSSPAG00000017028	-	81	60.664	Stegastes_partitus
ENSSFOG00015003923	alyref	75	54.348	ENSTRUG00000003051	-	76	56.219	Takifugu_rubripes
ENSSFOG00015003923	alyref	74	57.282	ENSTNIG00000014136	-	77	57.812	Tetraodon_nigroviridis
ENSSFOG00015003923	alyref	75	76.923	ENSTNIG00000011595	alyref	88	74.419	Tetraodon_nigroviridis
ENSSFOG00015003923	alyref	71	80.214	ENSVVUG00000000272	-	82	79.144	Vulpes_vulpes
ENSSFOG00015003923	alyref	72	77.561	ENSXCOG00000018047	alyref	75	77.295	Xiphophorus_couchianus
ENSSFOG00015003923	alyref	71	55.135	ENSXMAG00000018086	-	75	57.368	Xiphophorus_maculatus
ENSSFOG00015003923	alyref	72	77.561	ENSXMAG00000012218	alyref	75	77.295	Xiphophorus_maculatus