EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015004412 (Gene tree)
Gene ID: 108918719
Gene Symbol: lsm8
Alias: -
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 3097 bases
Position: chrKV411256.1:2269987-2273083
Accession: 108918719
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015006696	LSM	PF01423.22	7.3e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015006799	-	2013	XM_018726201	ENSSFOP00015006696	96 (aa)	XP_018581717	A0A0N8JXY8

Gene Model

Click here to download ENSSFOG00015004412's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03018	RNA degradation	KEGG
sfm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015004412's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015004412	lsm8	74	36.620	ENSSFOG00015019528	lsm1	53	36.620
ENSSFOG00015004412	lsm8	73	35.526	ENSSFOG00015006728	lsm7	72	35.526

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015004412	lsm8	100	91.667	ENSG00000128534	LSM8	100	96.000	Homo_sapiens
ENSSFOG00015004412	lsm8	100	96.875	ENSAPOG00000008649	lsm8	100	96.875	Acanthochromis_polyacanthus
ENSSFOG00015004412	lsm8	100	91.667	ENSAMEG00000001162	LSM8	100	91.667	Ailuropoda_melanoleuca
ENSSFOG00015004412	lsm8	78	96.000	ENSACIG00000014694	lsm8	100	96.000	Amphilophus_citrinellus
ENSSFOG00015004412	lsm8	100	96.875	ENSAOCG00000013926	lsm8	100	96.875	Amphiprion_ocellaris
ENSSFOG00015004412	lsm8	100	96.875	ENSAPEG00000023502	lsm8	100	96.875	Amphiprion_percula
ENSSFOG00015004412	lsm8	78	96.000	ENSATEG00000023432	lsm8	100	96.000	Anabas_testudineus
ENSSFOG00015004412	lsm8	95	88.298	ENSAPLG00000005115	LSM8	95	88.298	Anas_platyrhynchos
ENSSFOG00015004412	lsm8	100	91.667	ENSANAG00000027771	LSM8	100	93.243	Aotus_nancymaae
ENSSFOG00015004412	lsm8	100	96.875	ENSACLG00000011253	lsm8	100	96.875	Astatotilapia_calliptera
ENSSFOG00015004412	lsm8	100	96.875	ENSAMXG00000042902	lsm8	100	96.875	Astyanax_mexicanus
ENSSFOG00015004412	lsm8	100	91.667	ENSBTAG00000012649	LSM8	100	91.667	Bos_taurus
ENSSFOG00015004412	lsm8	98	56.383	WBGene00003082	lsm-8	96	56.383	Caenorhabditis_elegans
ENSSFOG00015004412	lsm8	100	91.667	ENSCJAG00000046406	LSM8	100	93.243	Callithrix_jacchus
ENSSFOG00015004412	lsm8	98	92.553	ENSCAFG00000016459	LSM8	95	92.553	Canis_familiaris
ENSSFOG00015004412	lsm8	89	91.765	ENSCAFG00020012800	-	66	91.765	Canis_lupus_dingo
ENSSFOG00015004412	lsm8	100	91.667	ENSCAFG00020007643	-	100	91.667	Canis_lupus_dingo
ENSSFOG00015004412	lsm8	89	94.118	ENSCHIG00000014201	LSM8	90	94.118	Capra_hircus
ENSSFOG00015004412	lsm8	100	91.667	ENSTSYG00000032434	LSM8	100	91.667	Carlito_syrichta
ENSSFOG00015004412	lsm8	77	94.595	ENSCAPG00000008253	LSM8	100	94.595	Cavia_aperea
ENSSFOG00015004412	lsm8	100	91.667	ENSCPOG00000035673	LSM8	100	91.667	Cavia_porcellus
ENSSFOG00015004412	lsm8	100	91.667	ENSCCAG00000021329	LSM8	100	93.243	Cebus_capucinus
ENSSFOG00015004412	lsm8	100	91.667	ENSCATG00000045302	LSM8	100	93.243	Cercocebus_atys
ENSSFOG00015004412	lsm8	100	91.667	ENSCLAG00000003726	LSM8	100	91.667	Chinchilla_lanigera
ENSSFOG00015004412	lsm8	100	91.667	ENSCSAG00000010802	-	100	91.667	Chlorocebus_sabaeus
ENSSFOG00015004412	lsm8	100	87.500	ENSCSAG00000019007	-	100	87.500	Chlorocebus_sabaeus
ENSSFOG00015004412	lsm8	89	94.118	ENSCPBG00000008154	LSM8	87	94.118	Chrysemys_picta_bellii
ENSSFOG00015004412	lsm8	100	76.042	ENSCING00000024877	-	100	76.042	Ciona_intestinalis
ENSSFOG00015004412	lsm8	100	91.667	ENSCANG00000040728	LSM8	100	93.243	Colobus_angolensis_palliatus
ENSSFOG00015004412	lsm8	100	91.667	ENSCGRG00001000450	Lsm8	100	91.667	Cricetulus_griseus_chok1gshd
ENSSFOG00015004412	lsm8	89	94.118	ENSCGRG00000005587	Lsm8	100	94.118	Cricetulus_griseus_crigri
ENSSFOG00015004412	lsm8	100	82.292	ENSCSEG00000004164	lsm8	100	82.292	Cynoglossus_semilaevis
ENSSFOG00015004412	lsm8	100	97.917	ENSCVAG00000020547	lsm8	100	97.917	Cyprinodon_variegatus
ENSSFOG00015004412	lsm8	100	95.833	ENSDARG00000091656	lsm8	100	95.833	Danio_rerio
ENSSFOG00015004412	lsm8	100	91.667	ENSDNOG00000034613	LSM8	100	91.667	Dasypus_novemcinctus
ENSSFOG00015004412	lsm8	100	91.667	ENSDORG00000027868	Lsm8	100	91.667	Dipodomys_ordii
ENSSFOG00015004412	lsm8	98	70.213	FBgn0035271	CG2021	99	70.213	Drosophila_melanogaster
ENSSFOG00015004412	lsm8	100	92.708	ENSETEG00000011594	LSM8	100	92.708	Echinops_telfairi
ENSSFOG00015004412	lsm8	77	90.541	ENSEBUG00000012017	lsm8	100	90.541	Eptatretus_burgeri
ENSSFOG00015004412	lsm8	100	91.667	ENSEASG00005008932	LSM8	62	91.667	Equus_asinus_asinus
ENSSFOG00015004412	lsm8	89	94.118	ENSECAG00000024025	LSM8	77	94.118	Equus_caballus
ENSSFOG00015004412	lsm8	100	93.750	ENSELUG00000010138	lsm8	100	93.750	Esox_lucius
ENSSFOG00015004412	lsm8	84	72.840	ENSFCAG00000044794	-	82	72.840	Felis_catus
ENSSFOG00015004412	lsm8	100	91.667	ENSFCAG00000036620	-	100	91.667	Felis_catus
ENSSFOG00015004412	lsm8	100	92.708	ENSFALG00000010023	LSM8	100	92.708	Ficedula_albicollis
ENSSFOG00015004412	lsm8	100	91.667	ENSFDAG00000019530	LSM8	100	91.667	Fukomys_damarensis
ENSSFOG00015004412	lsm8	100	96.875	ENSFHEG00000013729	lsm8	100	96.875	Fundulus_heteroclitus
ENSSFOG00015004412	lsm8	100	92.708	ENSGALG00000009110	LSM8	100	92.708	Gallus_gallus
ENSSFOG00015004412	lsm8	100	97.917	ENSGAFG00000001135	lsm8	100	97.917	Gambusia_affinis
ENSSFOG00015004412	lsm8	100	91.667	ENSGAGG00000017366	LSM8	100	91.667	Gopherus_agassizii
ENSSFOG00015004412	lsm8	100	91.667	ENSGGOG00000041883	LSM8	100	91.667	Gorilla_gorilla
ENSSFOG00015004412	lsm8	100	96.875	ENSHBUG00000003646	lsm8	100	96.875	Haplochromis_burtoni
ENSSFOG00015004412	lsm8	100	85.417	ENSHGLG00000019782	-	100	85.417	Heterocephalus_glaber_female
ENSSFOG00015004412	lsm8	71	91.176	ENSHGLG00000001988	-	99	91.176	Heterocephalus_glaber_female
ENSSFOG00015004412	lsm8	100	87.500	ENSHGLG00100012166	-	100	87.500	Heterocephalus_glaber_male
ENSSFOG00015004412	lsm8	98	90.426	ENSHGLG00100003934	-	94	90.426	Heterocephalus_glaber_male
ENSSFOG00015004412	lsm8	100	96.875	ENSHCOG00000005037	lsm8	100	96.875	Hippocampus_comes
ENSSFOG00015004412	lsm8	100	96.875	ENSIPUG00000019811	NAA38	100	96.875	Ictalurus_punctatus
ENSSFOG00015004412	lsm8	100	91.667	ENSSTOG00000009039	LSM8	100	91.667	Ictidomys_tridecemlineatus
ENSSFOG00015004412	lsm8	92	81.818	ENSSTOG00000034801	-	81	81.818	Ictidomys_tridecemlineatus
ENSSFOG00015004412	lsm8	100	91.667	ENSJJAG00000009031	Lsm8	99	91.667	Jaculus_jaculus
ENSSFOG00015004412	lsm8	100	96.875	ENSKMAG00000018983	lsm8	100	96.875	Kryptolebias_marmoratus
ENSSFOG00015004412	lsm8	100	94.792	ENSLACG00000010231	LSM8	100	94.792	Latimeria_chalumnae
ENSSFOG00015004412	lsm8	100	97.917	ENSLOCG00000015580	lsm8	100	97.917	Lepisosteus_oculatus
ENSSFOG00015004412	lsm8	100	90.722	ENSLAFG00000011242	LSM8	100	90.722	Loxodonta_africana
ENSSFOG00015004412	lsm8	100	87.500	ENSMFAG00000013044	-	100	87.500	Macaca_fascicularis
ENSSFOG00015004412	lsm8	100	91.667	ENSMFAG00000035798	LSM8	100	93.243	Macaca_fascicularis
ENSSFOG00015004412	lsm8	100	91.667	ENSMMUG00000046401	LSM8	100	93.243	Macaca_mulatta
ENSSFOG00015004412	lsm8	78	92.000	ENSMNEG00000011141	-	100	92.000	Macaca_nemestrina
ENSSFOG00015004412	lsm8	100	91.667	ENSMNEG00000036764	-	100	93.243	Macaca_nemestrina
ENSSFOG00015004412	lsm8	100	77.083	ENSMLEG00000039324	-	100	77.083	Mandrillus_leucophaeus
ENSSFOG00015004412	lsm8	100	91.667	ENSMLEG00000035828	-	100	93.243	Mandrillus_leucophaeus
ENSSFOG00015004412	lsm8	78	96.000	ENSMAMG00000018839	lsm8	100	96.000	Mastacembelus_armatus
ENSSFOG00015004412	lsm8	100	96.875	ENSMZEG00005019138	lsm8	100	96.875	Maylandia_zebra
ENSSFOG00015004412	lsm8	100	92.708	ENSMGAG00000008808	LSM8	100	92.708	Meleagris_gallopavo
ENSSFOG00015004412	lsm8	100	85.417	ENSMAUG00000015721	-	100	85.417	Mesocricetus_auratus
ENSSFOG00015004412	lsm8	100	75.000	ENSMAUG00000015356	-	100	75.000	Mesocricetus_auratus
ENSSFOG00015004412	lsm8	75	88.889	ENSMAUG00000020287	-	100	86.486	Mesocricetus_auratus
ENSSFOG00015004412	lsm8	100	91.667	ENSMICG00000042730	LSM8	100	91.667	Microcebus_murinus
ENSSFOG00015004412	lsm8	100	91.667	ENSMOCG00000001688	Lsm8	100	91.667	Microtus_ochrogaster
ENSSFOG00015004412	lsm8	78	96.000	ENSMMOG00000006046	lsm8	100	96.000	Mola_mola
ENSSFOG00015004412	lsm8	76	84.000	ENSMODG00000015729	LSM8	96	84.000	Monodelphis_domestica
ENSSFOG00015004412	lsm8	100	95.833	ENSMALG00000000405	lsm8	100	95.833	Monopterus_albus
ENSSFOG00015004412	lsm8	100	91.667	MGP_CAROLIEiJ_G0028125	-	100	91.667	Mus_caroli
ENSSFOG00015004412	lsm8	100	91.667	ENSMUSG00000044155	Lsm8	100	91.667	Mus_musculus
ENSSFOG00015004412	lsm8	100	91.667	MGP_PahariEiJ_G0021881	Lsm8	100	96.000	Mus_pahari
ENSSFOG00015004412	lsm8	100	91.667	MGP_SPRETEiJ_G0029125	-	100	91.667	Mus_spretus
ENSSFOG00015004412	lsm8	100	90.625	ENSMLUG00000027762	-	100	90.625	Myotis_lucifugus
ENSSFOG00015004412	lsm8	100	91.667	ENSMLUG00000006837	-	100	91.667	Myotis_lucifugus
ENSSFOG00015004412	lsm8	100	91.667	ENSNGAG00000016554	Lsm8	100	91.667	Nannospalax_galili
ENSSFOG00015004412	lsm8	100	96.875	ENSNBRG00000014441	lsm8	100	96.875	Neolamprologus_brichardi
ENSSFOG00015004412	lsm8	100	91.667	ENSNLEG00000011768	LSM8	100	91.667	Nomascus_leucogenys
ENSSFOG00015004412	lsm8	100	80.208	ENSMEUG00000007801	LSM8	100	80.208	Notamacropus_eugenii
ENSSFOG00015004412	lsm8	89	94.118	ENSOPRG00000014809	LSM8	100	94.118	Ochotona_princeps
ENSSFOG00015004412	lsm8	100	91.667	ENSODEG00000000418	-	100	91.667	Octodon_degus
ENSSFOG00015004412	lsm8	90	74.419	ENSODEG00000020290	-	100	74.419	Octodon_degus
ENSSFOG00015004412	lsm8	100	90.625	ENSOANG00000014536	LSM8	100	90.625	Ornithorhynchus_anatinus
ENSSFOG00015004412	lsm8	100	90.722	ENSOCUG00000017359	LSM8	100	90.722	Oryctolagus_cuniculus
ENSSFOG00015004412	lsm8	100	84.375	ENSORLG00000017432	lsm8	100	84.375	Oryzias_latipes
ENSSFOG00015004412	lsm8	100	84.375	ENSORLG00020004376	lsm8	100	84.375	Oryzias_latipes_hni
ENSSFOG00015004412	lsm8	100	96.875	ENSORLG00015003757	lsm8	100	96.875	Oryzias_latipes_hsok
ENSSFOG00015004412	lsm8	100	82.292	ENSOMEG00000022509	lsm8	100	83.333	Oryzias_melastigma
ENSSFOG00015004412	lsm8	100	91.667	ENSOGAG00000013377	LSM8	100	91.667	Otolemur_garnettii
ENSSFOG00015004412	lsm8	100	91.667	ENSOARG00000017974	LSM8	100	91.667	Ovis_aries
ENSSFOG00015004412	lsm8	78	96.000	ENSPPAG00000043228	-	100	96.000	Pan_paniscus
ENSSFOG00015004412	lsm8	100	91.667	ENSPPRG00000006444	LSM8	100	91.667	Panthera_pardus
ENSSFOG00015004412	lsm8	100	91.667	ENSPTIG00000004722	LSM8	100	91.667	Panthera_tigris_altaica
ENSSFOG00015004412	lsm8	78	96.000	ENSPTRG00000046596	-	100	96.000	Pan_troglodytes
ENSSFOG00015004412	lsm8	100	85.417	ENSPANG00000019395	-	100	85.417	Papio_anubis
ENSSFOG00015004412	lsm8	100	91.667	ENSPANG00000035470	-	100	93.243	Papio_anubis
ENSSFOG00015004412	lsm8	89	96.471	ENSPKIG00000006092	lsm8	86	96.471	Paramormyrops_kingsleyae
ENSSFOG00015004412	lsm8	78	96.000	ENSPSIG00000017054	LSM8	100	96.000	Pelodiscus_sinensis
ENSSFOG00015004412	lsm8	78	96.000	ENSPMGG00000016442	lsm8	100	96.000	Periophthalmus_magnuspinnatus
ENSSFOG00015004412	lsm8	77	93.243	ENSPEMG00000009153	Lsm8	100	93.243	Peromyscus_maniculatus_bairdii
ENSSFOG00015004412	lsm8	97	92.473	ENSPCIG00000021467	LSM8	98	92.473	Phascolarctos_cinereus
ENSSFOG00015004412	lsm8	100	97.917	ENSPFOG00000012340	lsm8	100	97.917	Poecilia_formosa
ENSSFOG00015004412	lsm8	100	88.542	ENSPLAG00000000516	lsm8	100	88.542	Poecilia_latipinna
ENSSFOG00015004412	lsm8	100	97.917	ENSPMEG00000022567	lsm8	100	97.917	Poecilia_mexicana
ENSSFOG00015004412	lsm8	76	86.250	ENSPREG00000005527	lsm8	72	86.250	Poecilia_reticulata
ENSSFOG00015004412	lsm8	100	91.667	ENSPPYG00000017942	LSM8	100	91.667	Pongo_abelii
ENSSFOG00015004412	lsm8	100	91.667	ENSPCOG00000003309	-	100	91.667	Propithecus_coquereli
ENSSFOG00015004412	lsm8	97	73.118	ENSPCOG00000017982	-	97	73.118	Propithecus_coquereli
ENSSFOG00015004412	lsm8	89	92.941	ENSPVAG00000000990	LSM8	100	92.941	Pteropus_vampyrus
ENSSFOG00015004412	lsm8	100	96.875	ENSPNYG00000011448	lsm8	100	96.875	Pundamilia_nyererei
ENSSFOG00015004412	lsm8	100	96.875	ENSPNAG00000010252	lsm8	100	96.875	Pygocentrus_nattereri
ENSSFOG00015004412	lsm8	100	91.667	ENSRNOG00000058677	Lsm8	100	91.667	Rattus_norvegicus
ENSSFOG00015004412	lsm8	100	91.667	ENSRBIG00000032851	LSM8	100	93.243	Rhinopithecus_bieti
ENSSFOG00015004412	lsm8	100	91.667	ENSRROG00000039618	LSM8	100	93.243	Rhinopithecus_roxellana
ENSSFOG00015004412	lsm8	100	91.667	ENSSBOG00000023223	LSM8	100	93.243	Saimiri_boliviensis_boliviensis
ENSSFOG00015004412	lsm8	100	91.667	ENSSHAG00000018435	-	100	91.667	Sarcophilus_harrisii
ENSSFOG00015004412	lsm8	78	93.333	ENSSMAG00000009458	lsm8	100	93.333	Scophthalmus_maximus
ENSSFOG00015004412	lsm8	100	96.875	ENSSDUG00000014702	lsm8	100	96.875	Seriola_dumerili
ENSSFOG00015004412	lsm8	78	96.000	ENSSLDG00000016870	lsm8	100	96.000	Seriola_lalandi_dorsalis
ENSSFOG00015004412	lsm8	75	95.833	ENSSARG00000009628	-	100	95.833	Sorex_araneus
ENSSFOG00015004412	lsm8	100	91.667	ENSSPUG00000017419	LSM8	100	91.667	Sphenodon_punctatus
ENSSFOG00015004412	lsm8	100	96.875	ENSSPAG00000021422	lsm8	100	96.875	Stegastes_partitus
ENSSFOG00015004412	lsm8	100	91.667	ENSSSCG00000021652	LSM8	100	91.667	Sus_scrofa
ENSSFOG00015004412	lsm8	100	92.708	ENSTGUG00000004730	-	100	92.708	Taeniopygia_guttata
ENSSFOG00015004412	lsm8	100	91.667	ENSTGUG00000016823	-	100	91.667	Taeniopygia_guttata
ENSSFOG00015004412	lsm8	100	96.875	ENSTRUG00000025192	lsm8	100	96.875	Takifugu_rubripes
ENSSFOG00015004412	lsm8	100	96.875	ENSTNIG00000002864	lsm8	100	96.875	Tetraodon_nigroviridis
ENSSFOG00015004412	lsm8	100	91.667	ENSTTRG00000001023	LSM8	100	91.667	Tursiops_truncatus
ENSSFOG00015004412	lsm8	92	90.909	ENSUAMG00000006943	-	92	90.909	Ursus_americanus
ENSSFOG00015004412	lsm8	92	90.909	ENSUMAG00000003073	LSM8	94	90.909	Ursus_maritimus
ENSSFOG00015004412	lsm8	100	91.667	ENSVPAG00000001530	LSM8	100	91.667	Vicugna_pacos
ENSSFOG00015004412	lsm8	78	93.333	ENSVVUG00000013248	-	82	93.333	Vulpes_vulpes
ENSSFOG00015004412	lsm8	93	93.258	ENSXETG00000021829	lsm8	92	93.258	Xenopus_tropicalis
ENSSFOG00015004412	lsm8	100	95.833	ENSXCOG00000012938	lsm8	100	95.833	Xiphophorus_couchianus
ENSSFOG00015004412	lsm8	100	97.917	ENSXMAG00000025919	lsm8	100	97.917	Xiphophorus_maculatus