EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015004579 (Gene tree)
Gene ID: 108921796
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 11303 bases
Position: chrKV410808.1:2759043-2770345
Accession: 108921796
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015006979	PRP21_like_P	PF12230.8	7.1e-53	1	1
ENSSFOP00015006979	Surp	PF01805.20	6.9e-46	1	2
ENSSFOP00015006979	Surp	PF01805.20	6.9e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015007088	-	6738	XM_018731492	ENSSFOP00015006979	790 (aa)	XP_018587008	-

Gene Model

Click here to download ENSSFOG00015004579's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015004579's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015004579	sf3a1	99	85.385	ENSG00000099995	SF3A1	100	83.250	Homo_sapiens
ENSSFOG00015004579	sf3a1	100	91.150	ENSAPOG00000020465	sf3a1	100	90.265	Acanthochromis_polyacanthus
ENSSFOG00015004579	sf3a1	98	85.917	ENSAMEG00000007737	SF3A1	100	83.791	Ailuropoda_melanoleuca
ENSSFOG00015004579	sf3a1	100	90.771	ENSACIG00000020672	sf3a1	100	89.886	Amphilophus_citrinellus
ENSSFOG00015004579	sf3a1	100	90.898	ENSAOCG00000003060	sf3a1	100	90.013	Amphiprion_ocellaris
ENSSFOG00015004579	sf3a1	100	91.024	ENSAPEG00000010735	sf3a1	100	90.139	Amphiprion_percula
ENSSFOG00015004579	sf3a1	97	91.667	ENSATEG00000021201	sf3a1	96	90.755	Anabas_testudineus
ENSSFOG00015004579	sf3a1	96	85.827	ENSAPLG00000009057	SF3A1	99	84.170	Anas_platyrhynchos
ENSSFOG00015004579	sf3a1	100	82.801	ENSACAG00000009415	SF3A1	100	81.572	Anolis_carolinensis
ENSSFOG00015004579	sf3a1	97	85.714	ENSANAG00000032045	SF3A1	100	83.354	Aotus_nancymaae
ENSSFOG00015004579	sf3a1	100	89.886	ENSACLG00000012622	sf3a1	100	89.001	Astatotilapia_calliptera
ENSSFOG00015004579	sf3a1	99	90.458	ENSAMXG00000005382	sf3a1	99	90.331	Astyanax_mexicanus
ENSSFOG00015004579	sf3a1	99	85.256	ENSBTAG00000003390	SF3A1	100	83.500	Bos_taurus
ENSSFOG00015004579	sf3a1	87	43.130	WBGene00004188	prp-21	96	41.638	Caenorhabditis_elegans
ENSSFOG00015004579	sf3a1	99	84.872	ENSCJAG00000010370	SF3A1	100	83.125	Callithrix_jacchus
ENSSFOG00015004579	sf3a1	99	85.385	ENSCAFG00000012559	SF3A1	100	83.625	Canis_familiaris
ENSSFOG00015004579	sf3a1	99	85.385	ENSCAFG00020000838	SF3A1	100	83.625	Canis_lupus_dingo
ENSSFOG00015004579	sf3a1	99	85.385	ENSCHIG00000018642	SF3A1	100	83.625	Capra_hircus
ENSSFOG00015004579	sf3a1	99	85.385	ENSTSYG00000004739	SF3A1	100	83.625	Carlito_syrichta
ENSSFOG00015004579	sf3a1	96	69.201	ENSCAPG00000015414	SF3A1	97	69.067	Cavia_aperea
ENSSFOG00015004579	sf3a1	99	85.513	ENSCPOG00000014589	SF3A1	100	83.375	Cavia_porcellus
ENSSFOG00015004579	sf3a1	97	85.714	ENSCCAG00000032006	SF3A1	100	83.354	Cebus_capucinus
ENSSFOG00015004579	sf3a1	99	85.128	ENSCATG00000029241	SF3A1	100	83.375	Cercocebus_atys
ENSSFOG00015004579	sf3a1	98	85.237	ENSCLAG00000006508	SF3A1	100	83.605	Chinchilla_lanigera
ENSSFOG00015004579	sf3a1	99	85.000	ENSCSAG00000009470	SF3A1	100	83.250	Chlorocebus_sabaeus
ENSSFOG00015004579	sf3a1	59	89.011	ENSCHOG00000005201	SF3A1	67	89.011	Choloepus_hoffmanni
ENSSFOG00015004579	sf3a1	100	83.417	ENSCPBG00000007595	SF3A1	100	82.663	Chrysemys_picta_bellii
ENSSFOG00015004579	sf3a1	95	51.933	ENSCING00000008526	-	97	51.145	Ciona_intestinalis
ENSSFOG00015004579	sf3a1	91	64.035	ENSCSAVG00000005608	-	91	64.286	Ciona_savignyi
ENSSFOG00015004579	sf3a1	99	85.000	ENSCANG00000033564	SF3A1	100	83.250	Colobus_angolensis_palliatus
ENSSFOG00015004579	sf3a1	97	85.733	ENSCGRG00001008933	Sf3a1	100	82.979	Cricetulus_griseus_chok1gshd
ENSSFOG00015004579	sf3a1	97	85.733	ENSCGRG00000006127	Sf3a1	100	82.979	Cricetulus_griseus_crigri
ENSSFOG00015004579	sf3a1	100	88.384	ENSCSEG00000010792	sf3a1	100	87.374	Cynoglossus_semilaevis
ENSSFOG00015004579	sf3a1	100	89.381	ENSCVAG00000004560	sf3a1	100	88.243	Cyprinodon_variegatus
ENSSFOG00015004579	sf3a1	100	90.506	ENSDARG00000041887	sf3a1	100	89.747	Danio_rerio
ENSSFOG00015004579	sf3a1	99	84.891	ENSDNOG00000010629	SF3A1	100	83.021	Dasypus_novemcinctus
ENSSFOG00015004579	sf3a1	99	85.769	ENSDORG00000005613	Sf3a1	100	83.625	Dipodomys_ordii
ENSSFOG00015004579	sf3a1	86	60.727	FBgn0266917	Sf3a1	83	59.420	Drosophila_melanogaster
ENSSFOG00015004579	sf3a1	85	84.226	ENSETEG00000017194	SF3A1	100	81.690	Echinops_telfairi
ENSSFOG00015004579	sf3a1	98	67.319	ENSEBUG00000001285	sf3a1	96	68.550	Eptatretus_burgeri
ENSSFOG00015004579	sf3a1	99	85.128	ENSEASG00005010254	SF3A1	100	83.605	Equus_asinus_asinus
ENSSFOG00015004579	sf3a1	99	85.128	ENSECAG00000023962	SF3A1	100	83.605	Equus_caballus
ENSSFOG00015004579	sf3a1	74	93.443	ENSEEUG00000003159	SF3A1	82	93.443	Erinaceus_europaeus
ENSSFOG00015004579	sf3a1	100	87.154	ENSELUG00000022578	sf3a1	100	86.776	Esox_lucius
ENSSFOG00015004579	sf3a1	99	85.256	ENSFCAG00000011932	SF3A1	100	83.500	Felis_catus
ENSSFOG00015004579	sf3a1	96	84.757	ENSFALG00000006944	SF3A1	100	82.685	Ficedula_albicollis
ENSSFOG00015004579	sf3a1	99	85.256	ENSFDAG00000009560	SF3A1	100	83.500	Fukomys_damarensis
ENSSFOG00015004579	sf3a1	100	89.633	ENSFHEG00000010866	sf3a1	100	89.128	Fundulus_heteroclitus
ENSSFOG00015004579	sf3a1	100	86.094	ENSGMOG00000016024	sf3a1	100	83.709	Gadus_morhua
ENSSFOG00015004579	sf3a1	96	85.545	ENSGALG00000007937	SF3A1	100	83.061	Gallus_gallus
ENSSFOG00015004579	sf3a1	100	90.139	ENSGAFG00000009111	sf3a1	100	89.001	Gambusia_affinis
ENSSFOG00015004579	sf3a1	100	85.409	ENSGACG00000011893	sf3a1	100	84.528	Gasterosteus_aculeatus
ENSSFOG00015004579	sf3a1	96	82.569	ENSGAGG00000000762	SF3A1	99	82.176	Gopherus_agassizii
ENSSFOG00015004579	sf3a1	99	85.385	ENSGGOG00000012631	SF3A1	100	83.250	Gorilla_gorilla
ENSSFOG00015004579	sf3a1	100	89.886	ENSHBUG00000015795	sf3a1	100	88.875	Haplochromis_burtoni
ENSSFOG00015004579	sf3a1	99	85.256	ENSHGLG00000007907	SF3A1	100	83.500	Heterocephalus_glaber_female
ENSSFOG00015004579	sf3a1	99	85.256	ENSHGLG00100013799	SF3A1	100	83.500	Heterocephalus_glaber_male
ENSSFOG00015004579	sf3a1	100	86.473	ENSHCOG00000015423	sf3a1	100	84.324	Hippocampus_comes
ENSSFOG00015004579	sf3a1	98	88.486	ENSIPUG00000002470	sf3a1	99	88.228	Ictalurus_punctatus
ENSSFOG00015004579	sf3a1	99	85.256	ENSSTOG00000013892	SF3A1	100	83.500	Ictidomys_tridecemlineatus
ENSSFOG00015004579	sf3a1	98	85.237	ENSJJAG00000022566	Sf3a1	100	83.375	Jaculus_jaculus
ENSSFOG00015004579	sf3a1	100	88.622	ENSKMAG00000002400	sf3a1	100	88.116	Kryptolebias_marmoratus
ENSSFOG00015004579	sf3a1	100	87.611	ENSLBEG00000022974	sf3a1	100	86.599	Labrus_bergylta
ENSSFOG00015004579	sf3a1	100	83.774	ENSLACG00000003565	SF3A1	100	84.025	Latimeria_chalumnae
ENSSFOG00015004579	sf3a1	100	90.000	ENSLOCG00000008251	sf3a1	99	89.747	Lepisosteus_oculatus
ENSSFOG00015004579	sf3a1	97	56.322	ENSLAFG00000026032	-	97	54.798	Loxodonta_africana
ENSSFOG00015004579	sf3a1	99	85.385	ENSLAFG00000000448	SF3A1	100	83.500	Loxodonta_africana
ENSSFOG00015004579	sf3a1	99	84.872	ENSMFAG00000031979	SF3A1	100	83.125	Macaca_fascicularis
ENSSFOG00015004579	sf3a1	99	84.872	ENSMMUG00000005547	SF3A1	100	83.125	Macaca_mulatta
ENSSFOG00015004579	sf3a1	99	85.000	ENSMNEG00000037229	SF3A1	100	83.250	Macaca_nemestrina
ENSSFOG00015004579	sf3a1	99	85.000	ENSMLEG00000041908	SF3A1	100	83.250	Mandrillus_leucophaeus
ENSSFOG00015004579	sf3a1	98	91.591	ENSMAMG00000006460	sf3a1	96	90.686	Mastacembelus_armatus
ENSSFOG00015004579	sf3a1	100	89.886	ENSMZEG00005009633	sf3a1	100	89.001	Maylandia_zebra
ENSSFOG00015004579	sf3a1	96	85.808	ENSMGAG00000001330	SF3A1	99	84.149	Meleagris_gallopavo
ENSSFOG00015004579	sf3a1	93	81.707	ENSMAUG00000020317	Sf3a1	100	77.330	Mesocricetus_auratus
ENSSFOG00015004579	sf3a1	99	85.128	ENSMICG00000010038	SF3A1	100	83.375	Microcebus_murinus
ENSSFOG00015004579	sf3a1	97	85.455	ENSMOCG00000008438	Sf3a1	100	83.104	Microtus_ochrogaster
ENSSFOG00015004579	sf3a1	100	86.220	ENSMMOG00000015588	sf3a1	99	85.841	Mola_mola
ENSSFOG00015004579	sf3a1	97	85.436	ENSMODG00000009270	SF3A1	100	83.312	Monodelphis_domestica
ENSSFOG00015004579	sf3a1	100	90.025	ENSMALG00000000148	sf3a1	99	90.244	Monopterus_albus
ENSSFOG00015004579	sf3a1	99	84.615	MGP_CAROLIEiJ_G0016029	Sf3a1	99	83.418	Mus_caroli
ENSSFOG00015004579	sf3a1	99	84.615	ENSMUSG00000002129	Sf3a1	99	83.418	Mus_musculus
ENSSFOG00015004579	sf3a1	99	84.487	MGP_PahariEiJ_G0016862	Sf3a1	99	83.291	Mus_pahari
ENSSFOG00015004579	sf3a1	99	84.615	MGP_SPRETEiJ_G0016870	Sf3a1	99	83.418	Mus_spretus
ENSSFOG00015004579	sf3a1	99	85.128	ENSMPUG00000013144	SF3A1	100	83.750	Mustela_putorius_furo
ENSSFOG00015004579	sf3a1	99	85.256	ENSMLUG00000002139	SF3A1	100	83.500	Myotis_lucifugus
ENSSFOG00015004579	sf3a1	99	85.133	ENSNGAG00000016977	Sf3a1	100	83.354	Nannospalax_galili
ENSSFOG00015004579	sf3a1	100	89.660	ENSNBRG00000016642	sf3a1	100	88.651	Neolamprologus_brichardi
ENSSFOG00015004579	sf3a1	99	85.000	ENSNLEG00000003686	SF3A1	100	83.250	Nomascus_leucogenys
ENSSFOG00015004579	sf3a1	94	76.707	ENSMEUG00000008741	SF3A1	100	75.654	Notamacropus_eugenii
ENSSFOG00015004579	sf3a1	98	86.176	ENSOPRG00000016636	SF3A1	100	83.875	Ochotona_princeps
ENSSFOG00015004579	sf3a1	97	86.086	ENSODEG00000002571	SF3A1	100	83.459	Octodon_degus
ENSSFOG00015004579	sf3a1	100	90.013	ENSONIG00000010848	sf3a1	100	89.254	Oreochromis_niloticus
ENSSFOG00015004579	sf3a1	99	85.256	ENSOCUG00000007633	SF3A1	100	83.500	Oryctolagus_cuniculus
ENSSFOG00015004579	sf3a1	96	88.507	ENSORLG00000013050	sf3a1	99	88.243	Oryzias_latipes
ENSSFOG00015004579	sf3a1	99	85.987	ENSORLG00020003236	sf3a1	97	86.264	Oryzias_latipes_hni
ENSSFOG00015004579	sf3a1	100	88.608	ENSORLG00015017411	sf3a1	100	88.354	Oryzias_latipes_hsok
ENSSFOG00015004579	sf3a1	100	89.241	ENSOMEG00000013362	sf3a1	100	88.608	Oryzias_melastigma
ENSSFOG00015004579	sf3a1	99	85.256	ENSOGAG00000012931	SF3A1	100	83.500	Otolemur_garnettii
ENSSFOG00015004579	sf3a1	99	83.974	ENSOARG00000006849	SF3A1	100	82.375	Ovis_aries
ENSSFOG00015004579	sf3a1	99	84.103	ENSPPAG00000041790	SF3A1	100	80.935	Pan_paniscus
ENSSFOG00015004579	sf3a1	99	85.256	ENSPPRG00000004391	SF3A1	100	83.500	Panthera_pardus
ENSSFOG00015004579	sf3a1	98	85.237	ENSPTIG00000000844	SF3A1	100	84.596	Panthera_tigris_altaica
ENSSFOG00015004579	sf3a1	99	85.385	ENSPTRG00000014240	SF3A1	100	83.250	Pan_troglodytes
ENSSFOG00015004579	sf3a1	99	85.000	ENSPANG00000020772	SF3A1	100	83.250	Papio_anubis
ENSSFOG00015004579	sf3a1	79	91.209	ENSPSIG00000012803	SF3A1	99	91.209	Pelodiscus_sinensis
ENSSFOG00015004579	sf3a1	97	85.956	ENSPMGG00000023096	sf3a1	100	86.866	Periophthalmus_magnuspinnatus
ENSSFOG00015004579	sf3a1	97	85.864	ENSPEMG00000009494	Sf3a1	100	83.104	Peromyscus_maniculatus_bairdii
ENSSFOG00015004579	sf3a1	69	77.636	ENSPMAG00000007139	-	93	78.261	Petromyzon_marinus
ENSSFOG00015004579	sf3a1	99	84.615	ENSPCIG00000022692	SF3A1	100	83.563	Phascolarctos_cinereus
ENSSFOG00015004579	sf3a1	100	80.657	ENSPFOG00000016768	sf3a1	100	80.152	Poecilia_formosa
ENSSFOG00015004579	sf3a1	100	90.771	ENSPLAG00000017268	sf3a1	100	89.886	Poecilia_latipinna
ENSSFOG00015004579	sf3a1	96	91.004	ENSPMEG00000019811	sf3a1	100	90.105	Poecilia_mexicana
ENSSFOG00015004579	sf3a1	100	90.898	ENSPREG00000010347	sf3a1	100	90.013	Poecilia_reticulata
ENSSFOG00015004579	sf3a1	99	85.000	ENSPPYG00000011707	SF3A1	100	83.250	Pongo_abelii
ENSSFOG00015004579	sf3a1	58	85.537	ENSPCAG00000003266	SF3A1	56	85.537	Procavia_capensis
ENSSFOG00015004579	sf3a1	99	84.872	ENSPCOG00000026630	SF3A1	100	83.125	Propithecus_coquereli
ENSSFOG00015004579	sf3a1	95	85.220	ENSPVAG00000017719	SF3A1	94	84.554	Pteropus_vampyrus
ENSSFOG00015004579	sf3a1	100	89.633	ENSPNYG00000018706	sf3a1	100	88.622	Pundamilia_nyererei
ENSSFOG00015004579	sf3a1	99	91.603	ENSPNAG00000003721	sf3a1	99	91.094	Pygocentrus_nattereri
ENSSFOG00015004579	sf3a1	99	84.744	ENSRNOG00000005218	Sf3a1	99	83.061	Rattus_norvegicus
ENSSFOG00015004579	sf3a1	99	85.000	ENSRBIG00000032167	SF3A1	100	83.250	Rhinopithecus_bieti
ENSSFOG00015004579	sf3a1	99	85.000	ENSRROG00000044908	SF3A1	100	83.250	Rhinopithecus_roxellana
ENSSFOG00015004579	sf3a1	93	85.792	ENSSBOG00000021960	SF3A1	98	85.757	Saimiri_boliviensis_boliviensis
ENSSFOG00015004579	sf3a1	100	80.886	ENSSHAG00000003666	SF3A1	97	82.705	Sarcophilus_harrisii
ENSSFOG00015004579	sf3a1	100	86.599	ENSSMAG00000004275	sf3a1	100	86.852	Scophthalmus_maximus
ENSSFOG00015004579	sf3a1	100	89.760	ENSSDUG00000022219	sf3a1	100	89.001	Seriola_dumerili
ENSSFOG00015004579	sf3a1	100	89.760	ENSSLDG00000012642	sf3a1	100	89.001	Seriola_lalandi_dorsalis
ENSSFOG00015004579	sf3a1	98	82.670	ENSSARG00000005960	SF3A1	100	81.643	Sorex_araneus
ENSSFOG00015004579	sf3a1	96	85.084	ENSSPUG00000018863	SF3A1	100	81.965	Sphenodon_punctatus
ENSSFOG00015004579	sf3a1	100	90.392	ENSSPAG00000011856	sf3a1	100	89.633	Stegastes_partitus
ENSSFOG00015004579	sf3a1	99	85.128	ENSSSCG00000010002	SF3A1	100	83.500	Sus_scrofa
ENSSFOG00015004579	sf3a1	96	85.583	ENSTGUG00000010547	SF3A1	100	84.299	Taeniopygia_guttata
ENSSFOG00015004579	sf3a1	100	87.105	ENSTRUG00000006118	sf3a1	100	85.461	Takifugu_rubripes
ENSSFOG00015004579	sf3a1	63	85.507	ENSTNIG00000005713	sf3a1	89	90.179	Tetraodon_nigroviridis
ENSSFOG00015004579	sf3a1	99	78.333	ENSTBEG00000012771	SF3A1	100	76.625	Tupaia_belangeri
ENSSFOG00015004579	sf3a1	99	85.385	ENSTTRG00000001535	SF3A1	100	83.625	Tursiops_truncatus
ENSSFOG00015004579	sf3a1	99	83.123	ENSUAMG00000006750	SF3A1	99	82.494	Ursus_americanus
ENSSFOG00015004579	sf3a1	98	85.788	ENSUMAG00000016665	SF3A1	100	83.186	Ursus_maritimus
ENSSFOG00015004579	sf3a1	99	85.385	ENSVVUG00000003075	SF3A1	100	83.625	Vulpes_vulpes
ENSSFOG00015004579	sf3a1	100	79.401	ENSXETG00000016144	sf3a1	96	84.800	Xenopus_tropicalis
ENSSFOG00015004579	sf3a1	100	89.760	ENSXCOG00000015653	sf3a1	100	88.622	Xiphophorus_couchianus
ENSSFOG00015004579	sf3a1	100	90.013	ENSXMAG00000002753	sf3a1	100	88.875	Xiphophorus_maculatus