EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015004606 (Gene tree)
Gene ID: 108919291
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 19407 bases
Position: chrKV411269.1:2918443-2937849
Accession: 108919291
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015007183	CPSF_A	PF03178.15	1.4e-94	1	1
ENSSFOP00015007125	CPSF_A	PF03178.15	7.3e-94	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015007235	-	9723	XM_018727166	ENSSFOP00015007125	1372 (aa)	XP_018582682	-
ENSSFOT00015007263	-	624	-	ENSSFOP00015007155	145 (aa)	-	-
ENSSFOT00015007293	-	4314	-	ENSSFOP00015007183	1437 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015004606's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015004606's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015004606	cpsf1	100	81.323	ENSG00000071894	CPSF1	100	81.944	Homo_sapiens
ENSSFOG00015004606	cpsf1	100	86.344	ENSAPOG00000019621	cpsf1	98	86.947	Acanthochromis_polyacanthus
ENSSFOG00015004606	cpsf1	100	79.927	ENSAMEG00000005557	CPSF1	99	77.986	Ailuropoda_melanoleuca
ENSSFOG00015004606	cpsf1	100	86.890	ENSACIG00000006112	cpsf1	100	84.069	Amphilophus_citrinellus
ENSSFOG00015004606	cpsf1	100	87.146	ENSAOCG00000007120	cpsf1	100	85.211	Amphiprion_ocellaris
ENSSFOG00015004606	cpsf1	100	88.090	ENSAPEG00000005755	cpsf1	100	84.880	Amphiprion_percula
ENSSFOG00015004606	cpsf1	100	86.151	ENSATEG00000011097	cpsf1	100	83.502	Anabas_testudineus
ENSSFOG00015004606	cpsf1	92	77.044	ENSACAG00000009655	CPSF1	100	73.891	Anolis_carolinensis
ENSSFOG00015004606	cpsf1	100	81.164	ENSANAG00000036514	CPSF1	100	78.375	Aotus_nancymaae
ENSSFOG00015004606	cpsf1	100	86.867	ENSACLG00000012231	cpsf1	98	86.795	Astatotilapia_calliptera
ENSSFOG00015004606	cpsf1	100	81.600	ENSAMXG00000008485	cpsf1	100	78.842	Astyanax_mexicanus
ENSSFOG00015004606	cpsf1	100	79.643	ENSBTAG00000008355	CPSF1	100	79.571	Bos_taurus
ENSSFOG00015004606	cpsf1	99	33.217	WBGene00022301	cpsf-1	99	40.227	Caenorhabditis_elegans
ENSSFOG00015004606	cpsf1	100	81.382	ENSCJAG00000021421	CPSF1	100	78.306	Callithrix_jacchus
ENSSFOG00015004606	cpsf1	100	80.859	ENSCAFG00000001600	CPSF1	100	80.143	Canis_familiaris
ENSSFOG00015004606	cpsf1	100	80.859	ENSCAFG00020020821	CPSF1	100	78.129	Canis_lupus_dingo
ENSSFOG00015004606	cpsf1	100	76.962	ENSCHIG00000015833	CPSF1	100	74.414	Capra_hircus
ENSSFOG00015004606	cpsf1	100	81.891	ENSTSYG00000028560	CPSF1	100	82.407	Carlito_syrichta
ENSSFOG00015004606	cpsf1	99	80.956	ENSCAPG00000014921	CPSF1	97	80.882	Cavia_aperea
ENSSFOG00015004606	cpsf1	99	80.956	ENSCPOG00000011448	CPSF1	100	77.029	Cavia_porcellus
ENSSFOG00015004606	cpsf1	100	81.600	ENSCCAG00000037658	CPSF1	100	82.110	Cebus_capucinus
ENSSFOG00015004606	cpsf1	100	81.236	ENSCATG00000037234	CPSF1	100	81.944	Cercocebus_atys
ENSSFOG00015004606	cpsf1	100	81.295	ENSCLAG00000012166	CPSF1	100	78.015	Chinchilla_lanigera
ENSSFOG00015004606	cpsf1	100	81.309	ENSCSAG00000008502	CPSF1	100	78.237	Chlorocebus_sabaeus
ENSSFOG00015004606	cpsf1	99	82.660	ENSCPBG00000018910	CPSF1	96	79.764	Chrysemys_picta_bellii
ENSSFOG00015004606	cpsf1	96	47.185	ENSCING00000000514	-	100	47.113	Ciona_intestinalis
ENSSFOG00015004606	cpsf1	99	48.738	ENSCSAVG00000002293	-	98	51.643	Ciona_savignyi
ENSSFOG00015004606	cpsf1	100	78.478	ENSCANG00000032760	CPSF1	100	82.407	Colobus_angolensis_palliatus
ENSSFOG00015004606	cpsf1	100	81.295	ENSCGRG00001016344	Cpsf1	100	78.222	Cricetulus_griseus_chok1gshd
ENSSFOG00015004606	cpsf1	100	79.767	ENSCGRG00000003118	Cpsf1	100	76.775	Cricetulus_griseus_crigri
ENSSFOG00015004606	cpsf1	100	85.131	ENSCSEG00000013464	cpsf1	99	84.509	Cynoglossus_semilaevis
ENSSFOG00015004606	cpsf1	90	83.115	ENSCVAG00000014059	cpsf1	100	79.167	Cyprinodon_variegatus
ENSSFOG00015004606	cpsf1	100	88.517	ENSDARG00000034178	cpsf1	100	85.557	Danio_rerio
ENSSFOG00015004606	cpsf1	56	81.268	ENSDNOG00000043654	CPSF1	94	80.980	Dasypus_novemcinctus
ENSSFOG00015004606	cpsf1	100	80.277	ENSDORG00000006278	Cpsf1	97	80.422	Dipodomys_ordii
ENSSFOG00015004606	cpsf1	100	44.713	FBgn0024698	Cpsf160	100	43.507	Drosophila_melanogaster
ENSSFOG00015004606	cpsf1	80	87.248	ENSETEG00000006022	CPSF1	83	87.248	Echinops_telfairi
ENSSFOG00015004606	cpsf1	100	81.223	ENSEASG00005010774	CPSF1	100	78.473	Equus_asinus_asinus
ENSSFOG00015004606	cpsf1	100	81.150	ENSECAG00000022209	CPSF1	100	78.404	Equus_caballus
ENSSFOG00015004606	cpsf1	100	81.382	ENSEEUG00000000471	CPSF1	100	78.007	Erinaceus_europaeus
ENSSFOG00015004606	cpsf1	100	86.003	ENSELUG00000012271	cpsf1	100	86.519	Esox_lucius
ENSSFOG00015004606	cpsf1	100	81.368	ENSFDAG00000016060	CPSF1	100	78.084	Fukomys_damarensis
ENSSFOG00015004606	cpsf1	100	84.627	ENSFHEG00000016801	cpsf1	100	81.881	Fundulus_heteroclitus
ENSSFOG00015004606	cpsf1	100	85.102	ENSGMOG00000000796	cpsf1	100	82.680	Gadus_morhua
ENSSFOG00015004606	cpsf1	94	85.714	ENSGAFG00000018890	cpsf1	99	85.714	Gambusia_affinis
ENSSFOG00015004606	cpsf1	100	86.947	ENSGACG00000008703	cpsf1	100	84.214	Gasterosteus_aculeatus
ENSSFOG00015004606	cpsf1	100	79.273	ENSGAGG00000004276	CPSF1	98	82.696	Gopherus_agassizii
ENSSFOG00015004606	cpsf1	100	81.150	ENSGGOG00000016185	CPSF1	100	81.944	Gorilla_gorilla
ENSSFOG00015004606	cpsf1	100	87.910	ENSHBUG00000018900	cpsf1	100	84.828	Haplochromis_burtoni
ENSSFOG00015004606	cpsf1	100	81.368	ENSHGLG00000016139	CPSF1	100	78.084	Heterocephalus_glaber_female
ENSSFOG00015004606	cpsf1	100	81.295	ENSHGLG00100009750	CPSF1	100	78.015	Heterocephalus_glaber_male
ENSSFOG00015004606	cpsf1	100	84.582	ENSHCOG00000018509	cpsf1	100	81.935	Hippocampus_comes
ENSSFOG00015004606	cpsf1	100	85.642	ENSIPUG00000011259	cpsf1	100	82.567	Ictalurus_punctatus
ENSSFOG00015004606	cpsf1	100	80.783	ENSSTOG00000009957	CPSF1	97	80.783	Ictidomys_tridecemlineatus
ENSSFOG00015004606	cpsf1	100	81.150	ENSJJAG00000023002	Cpsf1	100	78.054	Jaculus_jaculus
ENSSFOG00015004606	cpsf1	91	91.536	ENSKMAG00000001940	cpsf1	99	91.536	Kryptolebias_marmoratus
ENSSFOG00015004606	cpsf1	100	85.185	ENSLBEG00000003601	cpsf1	100	83.024	Labrus_bergylta
ENSSFOG00015004606	cpsf1	88	79.092	ENSLACG00000000233	CPSF1	92	78.973	Latimeria_chalumnae
ENSSFOG00015004606	cpsf1	100	86.057	ENSLOCG00000008484	cpsf1	100	83.838	Lepisosteus_oculatus
ENSSFOG00015004606	cpsf1	100	80.568	ENSLAFG00000022601	CPSF1	98	80.713	Loxodonta_africana
ENSSFOG00015004606	cpsf1	100	81.164	ENSMFAG00000037013	CPSF1	100	81.944	Macaca_fascicularis
ENSSFOG00015004606	cpsf1	100	81.164	ENSMMUG00000007380	CPSF1	100	81.944	Macaca_mulatta
ENSSFOG00015004606	cpsf1	100	81.164	ENSMNEG00000043564	CPSF1	100	81.944	Macaca_nemestrina
ENSSFOG00015004606	cpsf1	100	81.164	ENSMLEG00000043010	CPSF1	100	81.944	Mandrillus_leucophaeus
ENSSFOG00015004606	cpsf1	100	86.558	ENSMAMG00000003803	cpsf1	100	83.795	Mastacembelus_armatus
ENSSFOG00015004606	cpsf1	100	85.579	ENSMZEG00005001168	cpsf1	100	82.113	Maylandia_zebra
ENSSFOG00015004606	cpsf1	100	81.223	ENSMAUG00000003601	Cpsf1	100	78.084	Mesocricetus_auratus
ENSSFOG00015004606	cpsf1	100	81.455	ENSMICG00000015767	CPSF1	100	78.291	Microcebus_murinus
ENSSFOG00015004606	cpsf1	100	81.118	ENSMOCG00000022758	Cpsf1	100	77.854	Microtus_ochrogaster
ENSSFOG00015004606	cpsf1	100	87.546	ENSMMOG00000021245	cpsf1	100	84.759	Mola_mola
ENSSFOG00015004606	cpsf1	100	81.323	ENSMODG00000010755	CPSF1	100	78.282	Monodelphis_domestica
ENSSFOG00015004606	cpsf1	100	86.500	ENSMALG00000020545	cpsf1	100	83.570	Monopterus_albus
ENSSFOG00015004606	cpsf1	100	81.441	MGP_CAROLIEiJ_G0019936	Cpsf1	100	78.153	Mus_caroli
ENSSFOG00015004606	cpsf1	100	81.441	ENSMUSG00000034022	Cpsf1	100	78.153	Mus_musculus
ENSSFOG00015004606	cpsf1	100	81.441	MGP_PahariEiJ_G0019946	Cpsf1	100	78.222	Mus_pahari
ENSSFOG00015004606	cpsf1	100	81.441	MGP_SPRETEiJ_G0020839	Cpsf1	100	78.153	Mus_spretus
ENSSFOG00015004606	cpsf1	99	80.662	ENSMPUG00000006419	CPSF1	93	80.809	Mustela_putorius_furo
ENSSFOG00015004606	cpsf1	100	80.755	ENSNGAG00000022460	Cpsf1	100	77.579	Nannospalax_galili
ENSSFOG00015004606	cpsf1	100	83.103	ENSNBRG00000000813	cpsf1	100	80.193	Neolamprologus_brichardi
ENSSFOG00015004606	cpsf1	86	71.622	ENSNLEG00000010633	-	100	81.944	Nomascus_leucogenys
ENSSFOG00015004606	cpsf1	85	88.953	ENSMEUG00000014922	CPSF1	84	88.953	Notamacropus_eugenii
ENSSFOG00015004606	cpsf1	64	87.302	ENSOPRG00000004693	-	70	87.302	Ochotona_princeps
ENSSFOG00015004606	cpsf1	100	81.587	ENSODEG00000013995	CPSF1	100	78.360	Octodon_degus
ENSSFOG00015004606	cpsf1	100	88.638	ENSONIG00000007676	cpsf1	100	85.379	Oreochromis_niloticus
ENSSFOG00015004606	cpsf1	62	80.714	ENSOANG00000010716	CPSF1	89	80.714	Ornithorhynchus_anatinus
ENSSFOG00015004606	cpsf1	100	84.968	ENSORLG00000013544	cpsf1	92	93.004	Oryzias_latipes
ENSSFOG00015004606	cpsf1	100	85.111	ENSORLG00020021693	cpsf1	92	93.004	Oryzias_latipes_hni
ENSSFOG00015004606	cpsf1	100	85.039	ENSORLG00015009979	cpsf1	100	82.745	Oryzias_latipes_hsok
ENSSFOG00015004606	cpsf1	100	85.571	ENSOMEG00000011849	cpsf1	100	83.299	Oryzias_melastigma
ENSSFOG00015004606	cpsf1	100	81.382	ENSOGAG00000000315	CPSF1	100	78.512	Otolemur_garnettii
ENSSFOG00015004606	cpsf1	100	81.164	ENSPPAG00000019280	CPSF1	100	83.710	Pan_paniscus
ENSSFOG00015004606	cpsf1	100	79.714	ENSPTRG00000051253	-	100	83.710	Pan_troglodytes
ENSSFOG00015004606	cpsf1	100	81.164	ENSPTRG00000049288	-	100	83.710	Pan_troglodytes
ENSSFOG00015004606	cpsf1	100	81.164	ENSPANG00000015005	CPSF1	100	81.944	Papio_anubis
ENSSFOG00015004606	cpsf1	100	92.784	ENSPKIG00000002582	cpsf1	100	93.046	Paramormyrops_kingsleyae
ENSSFOG00015004606	cpsf1	100	81.395	ENSPCIG00000009035	CPSF1	100	78.351	Phascolarctos_cinereus
ENSSFOG00015004606	cpsf1	100	84.071	ENSPFOG00000012870	cpsf1	100	81.271	Poecilia_formosa
ENSSFOG00015004606	cpsf1	100	84.083	ENSPREG00000016307	cpsf1	100	81.357	Poecilia_reticulata
ENSSFOG00015004606	cpsf1	100	73.527	ENSPPYG00000018973	CPSF1	100	70.937	Pongo_abelii
ENSSFOG00015004606	cpsf1	94	85.795	ENSPCAG00000011541	CPSF1	93	85.795	Procavia_capensis
ENSSFOG00015004606	cpsf1	100	77.673	ENSPCOG00000020001	CPSF1	100	81.481	Propithecus_coquereli
ENSSFOG00015004606	cpsf1	90	88.857	ENSPVAG00000006761	CPSF1	91	88.857	Pteropus_vampyrus
ENSSFOG00015004606	cpsf1	100	86.795	ENSPNYG00000004906	cpsf1	98	86.724	Pundamilia_nyererei
ENSSFOG00015004606	cpsf1	100	84.532	ENSPNAG00000024395	cpsf1	100	81.831	Pygocentrus_nattereri
ENSSFOG00015004606	cpsf1	100	81.368	ENSRNOG00000030705	Cpsf1	100	78.084	Rattus_norvegicus
ENSSFOG00015004606	cpsf1	100	81.164	ENSRBIG00000044907	CPSF1	100	82.407	Rhinopithecus_bieti
ENSSFOG00015004606	cpsf1	100	81.236	ENSRROG00000044861	CPSF1	100	82.407	Rhinopithecus_roxellana
ENSSFOG00015004606	cpsf1	100	81.309	ENSSBOG00000027177	CPSF1	98	81.236	Saimiri_boliviensis_boliviensis
ENSSFOG00015004606	cpsf1	100	81.018	ENSSHAG00000006500	CPSF1	100	78.213	Sarcophilus_harrisii
ENSSFOG00015004606	cpsf1	100	86.133	ENSSMAG00000020547	cpsf1	100	83.694	Scophthalmus_maximus
ENSSFOG00015004606	cpsf1	100	88.574	ENSSDUG00000001100	cpsf1	100	85.793	Seriola_dumerili
ENSSFOG00015004606	cpsf1	100	88.274	ENSSLDG00000003619	cpsf1	100	85.714	Seriola_lalandi_dorsalis
ENSSFOG00015004606	cpsf1	91	77.182	ENSSARG00000003643	CPSF1	92	76.917	Sorex_araneus
ENSSFOG00015004606	cpsf1	100	83.479	ENSSPUG00000014396	CPSF1	99	83.406	Sphenodon_punctatus
ENSSFOG00015004606	cpsf1	100	87.117	ENSSPAG00000005349	cpsf1	100	84.595	Stegastes_partitus
ENSSFOG00015004606	cpsf1	100	80.277	ENSSSCG00000005906	CPSF1	100	77.273	Sus_scrofa
ENSSFOG00015004606	cpsf1	100	84.911	ENSTRUG00000013134	cpsf1	98	84.840	Takifugu_rubripes
ENSSFOG00015004606	cpsf1	100	86.449	ENSTNIG00000014027	cpsf1	100	83.687	Tetraodon_nigroviridis
ENSSFOG00015004606	cpsf1	76	79.216	ENSTBEG00000001756	CPSF1	88	79.216	Tupaia_belangeri
ENSSFOG00015004606	cpsf1	90	84.337	ENSTTRG00000001937	CPSF1	90	84.165	Tursiops_truncatus
ENSSFOG00015004606	cpsf1	100	81.368	ENSUAMG00000006476	CPSF1	96	81.295	Ursus_americanus
ENSSFOG00015004606	cpsf1	100	85.652	ENSXCOG00000003608	cpsf1	100	83.023	Xiphophorus_couchianus
ENSSFOG00015004606	cpsf1	100	84.778	ENSXMAG00000005798	cpsf1	100	81.919	Xiphophorus_maculatus