EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015004735 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: fj17e06|si:dkey-54k13.1|unm_sa1472|wu:fj17e06
Full Name: trinucleotide repeat-containing gene 6C protein-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 12734 bases
Position: chrKV411140.1:253779-266512
Accession: 108937189
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015007348	RRM_1	PF00076.22	4.4e-06	1	1
ENSSFOP00015007327	RRM_1	PF00076.22	3.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015007437	-	4458	XM_018756984	ENSSFOP00015007327	1485 (aa)	XP_018612500	-
ENSSFOT00015007458	-	1065	-	ENSSFOP00015007348	354 (aa)	-	-
ENSSFOT00015007477	-	648	-	ENSSFOP00015007367	215 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015004735's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015004735's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015004735	-	100	66.667	ENSSFOG00015006475	tnrc6c1	91	62.554

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015004735	-	99	61.257	ENSG00000078687	TNRC6C	99	52.174	Homo_sapiens
ENSSFOG00015004735	-	99	68.633	ENSAPOG00000019749	tnrc6c1	84	65.432	Acanthochromis_polyacanthus
ENSSFOG00015004735	-	99	59.250	ENSAMEG00000013756	TNRC6C	87	56.367	Ailuropoda_melanoleuca
ENSSFOG00015004735	-	99	68.380	ENSACIG00000008075	tnrc6c1	97	62.200	Amphilophus_citrinellus
ENSSFOG00015004735	-	99	70.027	ENSAOCG00000023968	tnrc6c1	84	62.743	Amphiprion_ocellaris
ENSSFOG00015004735	-	99	70.027	ENSAPEG00000009020	tnrc6c1	84	64.534	Amphiprion_percula
ENSSFOG00015004735	-	99	60.891	ENSAPLG00000005456	TNRC6C	74	56.308	Anas_platyrhynchos
ENSSFOG00015004735	-	99	61.443	ENSACAG00000016198	TNRC6C	70	57.476	Anolis_carolinensis
ENSSFOG00015004735	-	99	61.257	ENSANAG00000021554	TNRC6C	76	56.289	Aotus_nancymaae
ENSSFOG00015004735	-	99	60.149	ENSACLG00000000622	-	95	59.158	Astatotilapia_calliptera
ENSSFOG00015004735	-	99	67.095	ENSACLG00000000424	tnrc6c1	54	61.398	Astatotilapia_calliptera
ENSSFOG00015004735	-	99	62.565	ENSBTAG00000018658	TNRC6C	83	47.810	Bos_taurus
ENSSFOG00015004735	-	99	61.257	ENSCJAG00000019431	TNRC6C	81	56.289	Callithrix_jacchus
ENSSFOG00015004735	-	99	59.148	ENSCAFG00000005224	TNRC6C	80	56.931	Canis_familiaris
ENSSFOG00015004735	-	99	60.995	ENSCAFG00020006661	TNRC6C	80	56.348	Canis_lupus_dingo
ENSSFOG00015004735	-	99	62.565	ENSCHIG00000026004	TNRC6C	77	48.182	Capra_hircus
ENSSFOG00015004735	-	99	58.500	ENSTSYG00000005403	TNRC6C	69	56.871	Carlito_syrichta
ENSSFOG00015004735	-	99	57.180	ENSCAPG00000007307	TNRC6C	61	51.331	Cavia_aperea
ENSSFOG00015004735	-	99	60.836	ENSCPOG00000000467	TNRC6C	61	55.949	Cavia_porcellus
ENSSFOG00015004735	-	99	61.257	ENSCCAG00000030524	TNRC6C	75	57.935	Cebus_capucinus
ENSSFOG00015004735	-	99	61.257	ENSCATG00000033135	TNRC6C	75	56.394	Cercocebus_atys
ENSSFOG00015004735	-	99	60.836	ENSCLAG00000011139	TNRC6C	80	56.317	Chinchilla_lanigera
ENSSFOG00015004735	-	99	59.398	ENSCSAG00000005167	TNRC6C	75	56.554	Chlorocebus_sabaeus
ENSSFOG00015004735	-	99	62.304	ENSCPBG00000027960	TNRC6C	83	57.158	Chrysemys_picta_bellii
ENSSFOG00015004735	-	99	61.257	ENSCANG00000041771	TNRC6C	75	56.604	Colobus_angolensis_palliatus
ENSSFOG00015004735	-	99	61.780	ENSCGRG00001022686	Tnrc6c	61	55.839	Cricetulus_griseus_chok1gshd
ENSSFOG00015004735	-	99	61.780	ENSCGRG00000018041	Tnrc6c	61	55.996	Cricetulus_griseus_crigri
ENSSFOG00015004735	-	99	63.613	ENSCSEG00000012744	tnrc6c1	80	61.752	Cynoglossus_semilaevis
ENSSFOG00015004735	-	100	69.211	ENSDARG00000076847	tnrc6c1	91	61.670	Danio_rerio
ENSSFOG00015004735	-	99	59.750	ENSDNOG00000003247	TNRC6C	81	59.713	Dasypus_novemcinctus
ENSSFOG00015004735	-	99	61.097	ENSDORG00000004558	Tnrc6c	53	55.069	Dipodomys_ordii
ENSSFOG00015004735	-	99	57.963	ENSETEG00000005527	TNRC6C	51	53.391	Echinops_telfairi
ENSSFOG00015004735	-	99	60.995	ENSEASG00005004799	TNRC6C	53	57.128	Equus_asinus_asinus
ENSSFOG00015004735	-	99	60.995	ENSECAG00000012486	TNRC6C	62	57.460	Equus_caballus
ENSSFOG00015004735	-	99	49.347	ENSEEUG00000010008	TNRC6C	74	52.366	Erinaceus_europaeus
ENSSFOG00015004735	-	99	60.574	ENSFCAG00000028358	TNRC6C	80	56.243	Felis_catus
ENSSFOG00015004735	-	99	61.194	ENSFALG00000000848	TNRC6C	75	55.067	Ficedula_albicollis
ENSSFOG00015004735	-	99	60.836	ENSFDAG00000010368	TNRC6C	86	56.531	Fukomys_damarensis
ENSSFOG00015004735	-	99	66.244	ENSFHEG00000002936	tnrc6c1	84	61.538	Fundulus_heteroclitus
ENSSFOG00015004735	-	99	62.304	ENSGALG00000001725	TNRC6C	74	58.960	Gallus_gallus
ENSSFOG00015004735	-	99	65.491	ENSGAFG00000019019	tnrc6c1	89	61.589	Gambusia_affinis
ENSSFOG00015004735	-	99	65.128	ENSGACG00000012320	tnrc6c1	89	59.105	Gasterosteus_aculeatus
ENSSFOG00015004735	-	99	62.304	ENSGAGG00000022043	TNRC6C	83	59.508	Gopherus_agassizii
ENSSFOG00015004735	-	99	60.733	ENSGGOG00000011304	TNRC6C	81	56.184	Gorilla_gorilla
ENSSFOG00015004735	-	99	67.095	ENSHBUG00000010846	tnrc6c1	54	62.583	Haplochromis_burtoni
ENSSFOG00015004735	-	99	60.836	ENSHGLG00000004809	TNRC6C	61	56.317	Heterocephalus_glaber_female
ENSSFOG00015004735	-	99	61.640	ENSHGLG00100012597	TNRC6C	61	55.839	Heterocephalus_glaber_male
ENSSFOG00015004735	-	99	60.836	ENSSTOG00000009101	TNRC6C	61	56.462	Ictidomys_tridecemlineatus
ENSSFOG00015004735	-	99	59.791	ENSJJAG00000017055	Tnrc6c	60	56.137	Jaculus_jaculus
ENSSFOG00015004735	-	99	67.277	ENSKMAG00000021023	tnrc6c1	91	61.778	Kryptolebias_marmoratus
ENSSFOG00015004735	-	86	62.707	ENSLBEG00000007870	-	95	61.602	Labrus_bergylta
ENSSFOG00015004735	-	70	70.408	ENSLACG00000015283	TNRC6C	66	57.746	Latimeria_chalumnae
ENSSFOG00015004735	-	100	70.635	ENSLOCG00000013377	tnrc6c1	89	63.370	Lepisosteus_oculatus
ENSSFOG00015004735	-	99	60.367	ENSLAFG00000011122	TNRC6C	79	56.064	Loxodonta_africana
ENSSFOG00015004735	-	99	61.257	ENSMFAG00000043943	TNRC6C	76	56.394	Macaca_fascicularis
ENSSFOG00015004735	-	99	61.257	ENSMMUG00000011924	TNRC6C	74	56.660	Macaca_mulatta
ENSSFOG00015004735	-	99	61.257	ENSMNEG00000030405	TNRC6C	76	56.394	Macaca_nemestrina
ENSSFOG00015004735	-	99	61.257	ENSMLEG00000033436	TNRC6C	76	56.394	Mandrillus_leucophaeus
ENSSFOG00015004735	-	99	68.653	ENSMAMG00000023613	tnrc6c1	93	63.333	Mastacembelus_armatus
ENSSFOG00015004735	-	99	67.095	ENSMZEG00005010920	tnrc6c1	54	61.398	Maylandia_zebra
ENSSFOG00015004735	-	99	60.313	ENSMAUG00000021618	Tnrc6c	53	55.816	Mesocricetus_auratus
ENSSFOG00015004735	-	99	59.580	ENSMICG00000003952	TNRC6C	62	56.230	Microcebus_murinus
ENSSFOG00015004735	-	99	60.313	ENSMOCG00000015879	Tnrc6c	51	55.675	Microtus_ochrogaster
ENSSFOG00015004735	-	99	65.561	ENSMMOG00000005203	tnrc6c1	90	63.029	Mola_mola
ENSSFOG00015004735	-	99	62.042	ENSMODG00000001785	TNRC6C	80	56.915	Monodelphis_domestica
ENSSFOG00015004735	-	99	60.313	MGP_CAROLIEiJ_G0017465	Tnrc6c	65	55.889	Mus_caroli
ENSSFOG00015004735	-	99	60.574	ENSMUSG00000025571	Tnrc6c	65	55.889	Mus_musculus
ENSSFOG00015004735	-	99	60.313	MGP_PahariEiJ_G0018593	Tnrc6c	65	56.103	Mus_pahari
ENSSFOG00015004735	-	99	60.574	MGP_SPRETEiJ_G0018309	Tnrc6c	65	55.889	Mus_spretus
ENSSFOG00015004735	-	99	59.000	ENSMPUG00000013348	TNRC6C	61	56.734	Mustela_putorius_furo
ENSSFOG00015004735	-	99	58.673	ENSMLUG00000014431	TNRC6C	78	55.509	Myotis_lucifugus
ENSSFOG00015004735	-	99	60.105	ENSNGAG00000012203	Tnrc6c	61	56.043	Nannospalax_galili
ENSSFOG00015004735	-	99	67.095	ENSNBRG00000005344	tnrc6c1	54	61.505	Neolamprologus_brichardi
ENSSFOG00015004735	-	99	59.398	ENSNLEG00000000047	TNRC6C	80	53.564	Nomascus_leucogenys
ENSSFOG00015004735	-	83	64.189	ENSMEUG00000005104	TNRC6C	78	60.676	Notamacropus_eugenii
ENSSFOG00015004735	-	99	61.097	ENSODEG00000012499	TNRC6C	68	56.592	Octodon_degus
ENSSFOG00015004735	-	99	66.162	ENSONIG00000002210	tnrc6c1	92	53.624	Oreochromis_niloticus
ENSSFOG00015004735	-	70	41.360	ENSOCUG00000006122	TNRC6C	59	43.443	Oryctolagus_cuniculus
ENSSFOG00015004735	-	99	65.736	ENSORLG00000009837	tnrc6c1	99	64.103	Oryzias_latipes
ENSSFOG00015004735	-	99	65.990	ENSORLG00020016510	tnrc6c1	89	62.279	Oryzias_latipes_hni
ENSSFOG00015004735	-	62	59.475	ENSORLG00015000171	tnrc6c1	92	60.075	Oryzias_latipes_hsok
ENSSFOG00015004735	-	99	65.063	ENSOMEG00000000357	tnrc6c1	94	62.500	Oryzias_melastigma
ENSSFOG00015004735	-	99	59.000	ENSOGAG00000007197	TNRC6C	54	56.144	Otolemur_garnettii
ENSSFOG00015004735	-	83	65.287	ENSOARG00000006041	TNRC6C	59	59.167	Ovis_aries
ENSSFOG00015004735	-	99	61.257	ENSPPAG00000027160	TNRC6C	76	56.499	Pan_paniscus
ENSSFOG00015004735	-	99	60.313	ENSPPRG00000018881	TNRC6C	80	56.034	Panthera_pardus
ENSSFOG00015004735	-	83	66.216	ENSPTIG00000008791	TNRC6C	87	39.916	Panthera_tigris_altaica
ENSSFOG00015004735	-	99	61.257	ENSPTRG00000009699	TNRC6C	76	56.394	Pan_troglodytes
ENSSFOG00015004735	-	99	61.257	ENSPANG00000019994	TNRC6C	77	56.394	Papio_anubis
ENSSFOG00015004735	-	66	67.969	ENSPKIG00000023304	-	100	68.359	Paramormyrops_kingsleyae
ENSSFOG00015004735	-	100	67.519	ENSPKIG00000005428	tnrc6c1	92	57.339	Paramormyrops_kingsleyae
ENSSFOG00015004735	-	99	62.663	ENSPSIG00000018069	TNRC6C	61	56.284	Pelodiscus_sinensis
ENSSFOG00015004735	-	99	61.478	ENSPMGG00000022911	tnrc6c1	98	58.314	Periophthalmus_magnuspinnatus
ENSSFOG00015004735	-	99	60.313	ENSPEMG00000009785	Tnrc6c	68	51.541	Peromyscus_maniculatus_bairdii
ENSSFOG00015004735	-	99	65.829	ENSPFOG00000012560	tnrc6c1	78	61.571	Poecilia_formosa
ENSSFOG00015004735	-	99	65.829	ENSPLAG00000021055	tnrc6c1	89	62.283	Poecilia_latipinna
ENSSFOG00015004735	-	99	59.398	ENSPPYG00000008679	TNRC6C	74	56.660	Pongo_abelii
ENSSFOG00015004735	-	99	60.313	ENSPCAG00000012510	TNRC6C	60	56.739	Procavia_capensis
ENSSFOG00015004735	-	99	61.518	ENSPCOG00000021451	TNRC6C	69	56.917	Propithecus_coquereli
ENSSFOG00015004735	-	82	54.582	ENSPVAG00000002008	TNRC6C	76	54.447	Pteropus_vampyrus
ENSSFOG00015004735	-	99	67.095	ENSPNYG00000014477	tnrc6c1	55	62.693	Pundamilia_nyererei
ENSSFOG00015004735	-	99	60.313	ENSRNOG00000022395	Tnrc6c	53	55.734	Rattus_norvegicus
ENSSFOG00015004735	-	99	61.257	ENSRBIG00000027777	TNRC6C	76	56.499	Rhinopithecus_bieti
ENSSFOG00015004735	-	99	61.257	ENSRROG00000042912	TNRC6C	76	56.499	Rhinopithecus_roxellana
ENSSFOG00015004735	-	99	60.814	ENSSBOG00000023981	TNRC6C	76	56.857	Saimiri_boliviensis_boliviensis
ENSSFOG00015004735	-	99	60.848	ENSSHAG00000018330	-	99	56.884	Sarcophilus_harrisii
ENSSFOG00015004735	-	99	65.051	ENSSMAG00000012761	tnrc6c1	94	61.641	Scophthalmus_maximus
ENSSFOG00015004735	-	99	66.837	ENSSDUG00000002366	tnrc6c1	96	63.065	Seriola_dumerili
ENSSFOG00015004735	-	99	66.582	ENSSLDG00000025613	tnrc6c1	88	63.827	Seriola_lalandi_dorsalis
ENSSFOG00015004735	-	80	54.922	ENSSARG00000006816	TNRC6C	63	53.061	Sorex_araneus
ENSSFOG00015004735	-	99	60.199	ENSSPUG00000007341	TNRC6C	84	56.887	Sphenodon_punctatus
ENSSFOG00015004735	-	92	65.574	ENSSPAG00000014977	tnrc6c1	89	68.083	Stegastes_partitus
ENSSFOG00015004735	-	99	61.257	ENSSSCG00000034373	TNRC6C	77	47.619	Sus_scrofa
ENSSFOG00015004735	-	99	61.880	ENSTGUG00000007733	TNRC6C	72	56.257	Taeniopygia_guttata
ENSSFOG00015004735	-	99	66.495	ENSTRUG00000011685	tnrc6c1	90	62.719	Takifugu_rubripes
ENSSFOG00015004735	-	99	67.639	ENSTNIG00000005273	tnrc6c1	96	60.652	Tetraodon_nigroviridis
ENSSFOG00015004735	-	62	56.115	ENSTBEG00000005046	TNRC6C	79	54.613	Tupaia_belangeri
ENSSFOG00015004735	-	99	62.141	ENSTTRG00000010828	TNRC6C	65	58.110	Tursiops_truncatus
ENSSFOG00015004735	-	99	59.591	ENSUAMG00000021223	-	99	56.132	Ursus_americanus
ENSSFOG00015004735	-	99	61.097	ENSUMAG00000013614	TNRC6C	81	57.234	Ursus_maritimus
ENSSFOG00015004735	-	53	56.545	ENSVPAG00000006765	-	68	55.435	Vicugna_pacos
ENSSFOG00015004735	-	99	60.836	ENSVVUG00000015268	TNRC6C	52	58.636	Vulpes_vulpes
ENSSFOG00015004735	-	99	62.304	ENSXETG00000019470	tnrc6c	72	56.642	Xenopus_tropicalis
ENSSFOG00015004735	-	99	69.437	ENSXMAG00000025971	tnrc6c1	93	64.245	Xiphophorus_maculatus