EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015004989 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 1B
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 6904 bases
Position: chrKV410806.1:1748071-1754974
Accession: 108921269
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015007602	RRM_1	PF00076.22	6e-33	1	2
ENSSFOP00015007602	RRM_1	PF00076.22	6e-33	2	2
ENSSFOP00015007593	RRM_1	PF00076.22	6.3e-33	1	2
ENSSFOP00015007593	RRM_1	PF00076.22	6.3e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015007704	-	2635	-	ENSSFOP00015007593	277 (aa)	XP_018586178	A0A1W4YCY4
ENSSFOT00015007712	-	1199	-	ENSSFOP00015007602	273 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015004989's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015004989's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015004989	-	84	58.130	ENSSFOG00015002476	SRSF9	77	69.072
ENSSFOG00015004989	-	60	44.693	ENSSFOG00015008377	srsf5	70	39.904
ENSSFOG00015004989	-	76	98.068	ENSSFOG00015004800	srsf1a	83	98.068
ENSSFOG00015004989	-	60	49.091	ENSSFOG00015020292	srsf4	83	44.628
ENSSFOG00015004989	-	59	43.478	ENSSFOG00015019681	-	59	41.629
ENSSFOG00015004989	-	59	44.186	ENSSFOG00015015169	SRSF6	63	41.872
ENSSFOG00015004989	-	65	70.056	ENSSFOG00015017303	srsf9	77	69.072

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015004989	-	66	90.659	ENSACIG00000002623	-	95	91.758	Amphilophus_citrinellus
ENSSFOG00015004989	-	70	91.667	ENSACLG00000005676	-	83	92.157	Astatotilapia_calliptera
ENSSFOG00015004989	-	71	86.634	ENSACLG00000021693	-	82	88.785	Astatotilapia_calliptera
ENSSFOG00015004989	-	67	64.103	WBGene00004700	rsp-3	82	62.736	Caenorhabditis_elegans
ENSSFOG00015004989	-	66	72.928	ENSCING00000007375	-	81	72.021	Ciona_intestinalis
ENSSFOG00015004989	-	66	71.823	ENSCSAVG00000006093	-	96	70.681	Ciona_savignyi
ENSSFOG00015004989	-	67	67.914	FBgn0283477	SF2	73	69.355	Drosophila_melanogaster
ENSSFOG00015004989	-	70	81.152	ENSEBUG00000009582	-	87	81.773	Eptatretus_burgeri
ENSSFOG00015004989	-	70	87.310	ENSFHEG00000017425	-	97	87.027	Fundulus_heteroclitus
ENSSFOG00015004989	-	66	92.222	ENSGMOG00000010606	-	96	93.333	Gadus_morhua
ENSSFOG00015004989	-	70	92.708	ENSGAFG00000012721	-	83	92.157	Gambusia_affinis
ENSSFOG00015004989	-	72	87.129	ENSGAFG00000000609	-	84	87.204	Gambusia_affinis
ENSSFOG00015004989	-	66	92.737	ENSGACG00000011094	-	96	93.855	Gasterosteus_aculeatus
ENSSFOG00015004989	-	71	87.065	ENSHBUG00000015576	-	82	89.202	Haplochromis_burtoni
ENSSFOG00015004989	-	71	83.333	ENSHCOG00000008016	-	84	82.938	Hippocampus_comes
ENSSFOG00015004989	-	72	89.848	ENSMFAG00000034223	-	70	93.780	Macaca_fascicularis
ENSSFOG00015004989	-	70	91.667	ENSMZEG00005007947	-	83	92.157	Maylandia_zebra
ENSSFOG00015004989	-	71	87.500	ENSMZEG00005019071	-	98	86.631	Maylandia_zebra
ENSSFOG00015004989	-	71	89.175	ENSMMOG00000018849	-	83	89.806	Mola_mola
ENSSFOG00015004989	-	70	91.667	ENSNBRG00000019981	-	83	92.157	Neolamprologus_brichardi
ENSSFOG00015004989	-	71	89.119	ENSNBRG00000008134	-	82	88.785	Neolamprologus_brichardi
ENSSFOG00015004989	-	61	70.000	ENSOPRG00000004745	-	98	69.461	Ochotona_princeps
ENSSFOG00015004989	-	72	85.437	ENSONIG00000004857	-	85	88.837	Oreochromis_niloticus
ENSSFOG00015004989	-	63	55.814	ENSOCUG00000026856	-	97	55.747	Oryctolagus_cuniculus
ENSSFOG00015004989	-	71	90.769	ENSORLG00000005314	-	81	92.754	Oryzias_latipes
ENSSFOG00015004989	-	71	90.769	ENSORLG00015015497	-	81	92.754	Oryzias_latipes_hsok
ENSSFOG00015004989	-	71	88.000	ENSOMEG00000017711	-	81	90.094	Oryzias_melastigma
ENSSFOG00015004989	-	69	90.426	ENSPLAG00000019553	-	92	90.164	Poecilia_latipinna
ENSSFOG00015004989	-	66	90.556	ENSPLAG00000019613	-	71	92.179	Poecilia_latipinna
ENSSFOG00015004989	-	72	88.000	ENSPREG00000016792	-	84	88.038	Poecilia_reticulata
ENSSFOG00015004989	-	70	91.667	ENSPNYG00000017115	-	83	92.157	Pundamilia_nyererei
ENSSFOG00015004989	-	71	86.634	ENSPNYG00000020651	-	82	88.785	Pundamilia_nyererei
ENSSFOG00015004989	-	72	85.849	ENSSDUG00000003887	-	85	87.054	Seriola_dumerili
ENSSFOG00015004989	-	70	86.458	ENSTRUG00000017058	-	84	86.765	Takifugu_rubripes
ENSSFOG00015004989	-	72	81.726	ENSTNIG00000009993	-	85	83.902	Tetraodon_nigroviridis
ENSSFOG00015004989	-	69	90.426	ENSXCOG00000009643	-	83	92.000	Xiphophorus_couchianus
ENSSFOG00015004989	-	73	86.275	ENSXCOG00000017888	-	83	89.000	Xiphophorus_couchianus
ENSSFOG00015004989	-	72	87.562	ENSXMAG00000010797	-	84	87.619	Xiphophorus_maculatus