EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015005436 (Gene tree)
Gene ID: 108932064
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 55431 bases
Position: chrKV410985.1:771169-826599
Accession: 108932064
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015008301	EST1	PF10374.9	1.8e-13	1	1
ENSSFOP00015008301	EST1_DNA_bind	PF10373.9	3.7e-58	1	1
ENSSFOP00015008301	PIN_4	PF13638.6	7.1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015008418	-	8227	XM_018748233	ENSSFOP00015008301	1735 (aa)	XP_018603749	A0A1W4ZJ54

Gene Model

Click here to download ENSSFOG00015005436's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015005436's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015005436	smg6	70	56.525	ENSG00000070366	SMG6	100	63.738	Homo_sapiens
ENSSFOG00015005436	smg6	92	56.010	ENSAPOG00000019448	smg6	100	51.752	Acanthochromis_polyacanthus
ENSSFOG00015005436	smg6	70	57.604	ENSAMEG00000007632	SMG6	72	62.095	Ailuropoda_melanoleuca
ENSSFOG00015005436	smg6	87	55.290	ENSACIG00000012997	smg6	97	54.037	Amphilophus_citrinellus
ENSSFOG00015005436	smg6	92	56.298	ENSAOCG00000002630	smg6	100	52.143	Amphiprion_ocellaris
ENSSFOG00015005436	smg6	87	55.957	ENSAPEG00000019101	smg6	100	51.732	Amphiprion_percula
ENSSFOG00015005436	smg6	91	55.392	ENSATEG00000006483	smg6	94	54.442	Anabas_testudineus
ENSSFOG00015005436	smg6	60	52.138	ENSACAG00000011783	SMG6	73	56.843	Anolis_carolinensis
ENSSFOG00015005436	smg6	75	54.685	ENSANAG00000035760	SMG6	72	62.419	Aotus_nancymaae
ENSSFOG00015005436	smg6	91	55.820	ENSACLG00000005288	smg6	97	55.265	Astatotilapia_calliptera
ENSSFOG00015005436	smg6	70	69.397	ENSAMXG00000017326	smg6	84	69.021	Astyanax_mexicanus
ENSSFOG00015005436	smg6	70	57.390	ENSBTAG00000000267	SMG6	72	62.698	Bos_taurus
ENSSFOG00015005436	smg6	75	55.007	ENSCJAG00000001820	SMG6	72	61.816	Callithrix_jacchus
ENSSFOG00015005436	smg6	70	57.753	ENSCAFG00000019260	SMG6	74	62.000	Canis_familiaris
ENSSFOG00015005436	smg6	70	57.753	ENSCAFG00020009770	SMG6	74	62.000	Canis_lupus_dingo
ENSSFOG00015005436	smg6	70	57.602	ENSCHIG00000021998	SMG6	72	62.605	Capra_hircus
ENSSFOG00015005436	smg6	70	56.693	ENSTSYG00000003406	SMG6	100	64.112	Carlito_syrichta
ENSSFOG00015005436	smg6	63	57.512	ENSCAPG00000016197	SMG6	71	55.211	Cavia_aperea
ENSSFOG00015005436	smg6	70	56.535	ENSCPOG00000014878	SMG6	98	59.109	Cavia_porcellus
ENSSFOG00015005436	smg6	73	54.970	ENSCATG00000031956	SMG6	72	62.140	Cercocebus_atys
ENSSFOG00015005436	smg6	70	57.154	ENSCLAG00000006748	SMG6	91	60.944	Chinchilla_lanigera
ENSSFOG00015005436	smg6	73	55.120	ENSCSAG00000013800	SMG6	72	62.326	Chlorocebus_sabaeus
ENSSFOG00015005436	smg6	70	57.674	ENSCPBG00000020369	SMG6	87	55.222	Chrysemys_picta_bellii
ENSSFOG00015005436	smg6	73	54.744	ENSCANG00000031764	SMG6	100	63.364	Colobus_angolensis_palliatus
ENSSFOG00015005436	smg6	70	52.310	ENSCGRG00000007782	Smg6	74	56.250	Cricetulus_griseus_crigri
ENSSFOG00015005436	smg6	81	58.382	ENSCSEG00000012757	smg6	100	49.447	Cynoglossus_semilaevis
ENSSFOG00015005436	smg6	100	50.140	ENSCVAG00000012789	smg6	100	49.555	Cyprinodon_variegatus
ENSSFOG00015005436	smg6	91	57.208	ENSDARG00000100481	smg6	94	57.031	Danio_rerio
ENSSFOG00015005436	smg6	70	57.165	ENSDNOG00000048283	SMG6	73	61.293	Dasypus_novemcinctus
ENSSFOG00015005436	smg6	70	53.260	ENSDORG00000016614	Smg6	92	60.944	Dipodomys_ordii
ENSSFOG00015005436	smg6	69	90.476	ENSETEG00000016790	SMG6	66	90.476	Echinops_telfairi
ENSSFOG00015005436	smg6	58	48.256	ENSEBUG00000005059	smg6	63	49.217	Eptatretus_burgeri
ENSSFOG00015005436	smg6	70	57.154	ENSEASG00005009318	SMG6	71	62.721	Equus_asinus_asinus
ENSSFOG00015005436	smg6	70	56.996	ENSECAG00000006519	SMG6	71	62.535	Equus_caballus
ENSSFOG00015005436	smg6	70	48.780	ENSEEUG00000003493	SMG6	74	51.956	Erinaceus_europaeus
ENSSFOG00015005436	smg6	77	68.100	ENSELUG00000005934	smg6	98	62.307	Esox_lucius
ENSSFOG00015005436	smg6	70	57.811	ENSFCAG00000028817	SMG6	72	62.825	Felis_catus
ENSSFOG00015005436	smg6	75	55.729	ENSFALG00000006538	SMG6	88	54.741	Ficedula_albicollis
ENSSFOG00015005436	smg6	70	57.121	ENSFDAG00000015106	SMG6	91	60.944	Fukomys_damarensis
ENSSFOG00015005436	smg6	100	50.890	ENSFHEG00000013282	smg6	100	50.557	Fundulus_heteroclitus
ENSSFOG00015005436	smg6	70	57.643	ENSGALG00000003108	SMG6	81	56.285	Gallus_gallus
ENSSFOG00015005436	smg6	91	55.058	ENSGAFG00000000379	smg6	95	54.557	Gambusia_affinis
ENSSFOG00015005436	smg6	76	59.212	ENSGACG00000020521	smg6	98	58.709	Gasterosteus_aculeatus
ENSSFOG00015005436	smg6	70	57.177	ENSGAGG00000025617	SMG6	84	56.038	Gopherus_agassizii
ENSSFOG00015005436	smg6	75	54.566	ENSGGOG00000017156	SMG6	72	62.326	Gorilla_gorilla
ENSSFOG00015005436	smg6	91	55.038	ENSHBUG00000021311	smg6	94	54.914	Haplochromis_burtoni
ENSSFOG00015005436	smg6	70	57.753	ENSHGLG00000012882	SMG6	91	61.373	Heterocephalus_glaber_female
ENSSFOG00015005436	smg6	70	57.899	ENSHGLG00100017815	SMG6	91	61.373	Heterocephalus_glaber_male
ENSSFOG00015005436	smg6	61	62.838	ENSHCOG00000008761	smg6	83	62.925	Hippocampus_comes
ENSSFOG00015005436	smg6	91	56.671	ENSIPUG00000012493	smg6	95	56.039	Ictalurus_punctatus
ENSSFOG00015005436	smg6	70	57.120	ENSSTOG00000028127	SMG6	92	60.515	Ictidomys_tridecemlineatus
ENSSFOG00015005436	smg6	53	54.237	ENSJJAG00000015367	Smg6	62	58.375	Jaculus_jaculus
ENSSFOG00015005436	smg6	92	55.641	ENSKMAG00000000279	smg6	91	54.505	Kryptolebias_marmoratus
ENSSFOG00015005436	smg6	77	61.700	ENSLBEG00000002184	smg6	100	50.415	Labrus_bergylta
ENSSFOG00015005436	smg6	70	56.727	ENSLAFG00000001261	SMG6	72	62.245	Loxodonta_africana
ENSSFOG00015005436	smg6	73	55.120	ENSMFAG00000003394	SMG6	72	62.326	Macaca_fascicularis
ENSSFOG00015005436	smg6	73	55.120	ENSMMUG00000023161	SMG6	72	62.326	Macaca_mulatta
ENSSFOG00015005436	smg6	73	52.604	ENSMNEG00000044592	SMG6	71	59.608	Macaca_nemestrina
ENSSFOG00015005436	smg6	69	64.158	ENSMLEG00000029353	SMG6	72	64.388	Mandrillus_leucophaeus
ENSSFOG00015005436	smg6	92	56.051	ENSMAMG00000020119	smg6	97	55.485	Mastacembelus_armatus
ENSSFOG00015005436	smg6	91	55.762	ENSMZEG00005024736	smg6	100	51.595	Maylandia_zebra
ENSSFOG00015005436	smg6	70	57.832	ENSMICG00000012913	SMG6	74	61.879	Microcebus_murinus
ENSSFOG00015005436	smg6	80	60.514	ENSMMOG00000010883	smg6	83	59.179	Mola_mola
ENSSFOG00015005436	smg6	70	58.950	ENSMODG00000010622	SMG6	74	61.783	Monodelphis_domestica
ENSSFOG00015005436	smg6	91	55.527	ENSMALG00000001106	smg6	94	54.615	Monopterus_albus
ENSSFOG00015005436	smg6	70	57.109	MGP_CAROLIEiJ_G0016729	Smg6	97	66.572	Mus_caroli
ENSSFOG00015005436	smg6	70	57.176	ENSMUSG00000038290	Smg6	97	66.477	Mus_musculus
ENSSFOG00015005436	smg6	70	56.638	MGP_PahariEiJ_G0017866	Smg6	97	66.289	Mus_pahari
ENSSFOG00015005436	smg6	70	57.098	MGP_SPRETEiJ_G0017572	Smg6	97	66.193	Mus_spretus
ENSSFOG00015005436	smg6	70	57.480	ENSMPUG00000013046	SMG6	72	62.698	Mustela_putorius_furo
ENSSFOG00015005436	smg6	70	57.334	ENSMLUG00000005739	SMG6	72	62.605	Myotis_lucifugus
ENSSFOG00015005436	smg6	70	56.439	ENSNGAG00000007287	Smg6	98	57.540	Nannospalax_galili
ENSSFOG00015005436	smg6	88	53.279	ENSNBRG00000009511	smg6	99	52.945	Neolamprologus_brichardi
ENSSFOG00015005436	smg6	75	54.713	ENSNLEG00000017171	SMG6	100	63.738	Nomascus_leucogenys
ENSSFOG00015005436	smg6	70	57.686	ENSMEUG00000015804	SMG6	73	61.581	Notamacropus_eugenii
ENSSFOG00015005436	smg6	87	44.269	ENSODEG00000008038	SMG6	81	57.143	Octodon_degus
ENSSFOG00015005436	smg6	100	51.535	ENSONIG00000005594	smg6	93	60.955	Oreochromis_niloticus
ENSSFOG00015005436	smg6	71	56.630	ENSOCUG00000013018	SMG6	72	61.816	Oryctolagus_cuniculus
ENSSFOG00015005436	smg6	91	53.151	ENSORLG00000003317	smg6	94	53.024	Oryzias_latipes
ENSSFOG00015005436	smg6	91	53.287	ENSORLG00020015343	smg6	94	52.655	Oryzias_latipes_hni
ENSSFOG00015005436	smg6	91	53.346	ENSORLG00015020454	smg6	91	52.863	Oryzias_latipes_hsok
ENSSFOG00015005436	smg6	70	56.952	ENSOGAG00000004483	SMG6	72	62.639	Otolemur_garnettii
ENSSFOG00015005436	smg6	70	57.680	ENSOARG00000015076	SMG6	74	62.605	Ovis_aries
ENSSFOG00015005436	smg6	75	54.418	ENSPPAG00000043296	SMG6	72	62.233	Pan_paniscus
ENSSFOG00015005436	smg6	70	57.619	ENSPPRG00000014581	SMG6	72	62.825	Panthera_pardus
ENSSFOG00015005436	smg6	70	57.619	ENSPTIG00000008925	SMG6	100	64.486	Panthera_tigris_altaica
ENSSFOG00015005436	smg6	75	54.492	ENSPTRG00000008544	SMG6	100	63.738	Pan_troglodytes
ENSSFOG00015005436	smg6	73	55.120	ENSPANG00000024588	SMG6	72	62.233	Papio_anubis
ENSSFOG00015005436	smg6	62	54.739	ENSPSIG00000006660	SMG6	79	54.642	Pelodiscus_sinensis
ENSSFOG00015005436	smg6	77	59.031	ENSPMGG00000000844	smg6	98	54.622	Periophthalmus_magnuspinnatus
ENSSFOG00015005436	smg6	70	57.402	ENSPEMG00000020707	Smg6	93	60.944	Peromyscus_maniculatus_bairdii
ENSSFOG00015005436	smg6	100	51.512	ENSPFOG00000012035	smg6	78	68.519	Poecilia_formosa
ENSSFOG00015005436	smg6	100	51.091	ENSPLAG00000017660	smg6	94	67.677	Poecilia_latipinna
ENSSFOG00015005436	smg6	100	51.678	ENSPMEG00000000258	smg6	94	68.073	Poecilia_mexicana
ENSSFOG00015005436	smg6	92	55.157	ENSPREG00000010066	smg6	94	55.058	Poecilia_reticulata
ENSSFOG00015005436	smg6	75	50.514	ENSPPYG00000007790	SMG6	72	57.368	Pongo_abelii
ENSSFOG00015005436	smg6	70	53.066	ENSPCAG00000000552	SMG6	73	58.508	Procavia_capensis
ENSSFOG00015005436	smg6	70	57.674	ENSPCOG00000020925	SMG6	74	61.643	Propithecus_coquereli
ENSSFOG00015005436	smg6	70	53.797	ENSPVAG00000002159	SMG6	72	58.279	Pteropus_vampyrus
ENSSFOG00015005436	smg6	88	53.943	ENSPNYG00000024151	smg6	99	53.948	Pundamilia_nyererei
ENSSFOG00015005436	smg6	74	61.557	ENSPNAG00000015480	smg6	92	73.274	Pygocentrus_nattereri
ENSSFOG00015005436	smg6	70	56.593	ENSRNOG00000003041	Smg6	97	66.856	Rattus_norvegicus
ENSSFOG00015005436	smg6	73	55.800	ENSRBIG00000024746	SMG6	72	62.233	Rhinopithecus_bieti
ENSSFOG00015005436	smg6	73	55.800	ENSRROG00000030423	SMG6	100	63.178	Rhinopithecus_roxellana
ENSSFOG00015005436	smg6	75	55.160	ENSSBOG00000022518	SMG6	72	60.465	Saimiri_boliviensis_boliviensis
ENSSFOG00015005436	smg6	70	58.386	ENSSHAG00000010045	SMG6	72	62.908	Sarcophilus_harrisii
ENSSFOG00015005436	smg6	91	55.047	ENSSMAG00000019777	smg6	91	54.724	Scophthalmus_maximus
ENSSFOG00015005436	smg6	100	52.426	ENSSDUG00000016412	smg6	100	52.018	Seriola_dumerili
ENSSFOG00015005436	smg6	84	55.126	ENSSLDG00000020747	smg6	95	54.746	Seriola_lalandi_dorsalis
ENSSFOG00015005436	smg6	70	56.111	ENSSPUG00000007152	SMG6	83	56.074	Sphenodon_punctatus
ENSSFOG00015005436	smg6	100	51.803	ENSSPAG00000015633	smg6	100	50.632	Stegastes_partitus
ENSSFOG00015005436	smg6	74	56.208	ENSSSCG00000017826	SMG6	72	62.698	Sus_scrofa
ENSSFOG00015005436	smg6	74	55.598	ENSTGUG00000005836	SMG6	73	61.808	Taeniopygia_guttata
ENSSFOG00015005436	smg6	87	55.491	ENSTRUG00000000358	smg6	98	54.334	Takifugu_rubripes
ENSSFOG00015005436	smg6	76	59.707	ENSTNIG00000016164	smg6	89	59.595	Tetraodon_nigroviridis
ENSSFOG00015005436	smg6	72	65.394	ENSTBEG00000011424	SMG6	68	65.729	Tupaia_belangeri
ENSSFOG00015005436	smg6	63	59.596	ENSTTRG00000001175	SMG6	63	59.768	Tursiops_truncatus
ENSSFOG00015005436	smg6	70	57.717	ENSUAMG00000025152	SMG6	74	62.581	Ursus_americanus
ENSSFOG00015005436	smg6	70	57.683	ENSUMAG00000009306	SMG6	74	62.698	Ursus_maritimus
ENSSFOG00015005436	smg6	58	96.000	ENSVPAG00000000225	SMG6	58	96.000	Vicugna_pacos
ENSSFOG00015005436	smg6	70	58.220	ENSVVUG00000021727	SMG6	74	62.652	Vulpes_vulpes
ENSSFOG00015005436	smg6	73	52.091	ENSXETG00000023799	SMG6	74	58.172	Xenopus_tropicalis
ENSSFOG00015005436	smg6	87	55.356	ENSXCOG00000009867	smg6	91	55.234	Xiphophorus_couchianus
ENSSFOG00015005436	smg6	91	54.586	ENSXMAG00000010321	smg6	95	54.349	Xiphophorus_maculatus