EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015005464 (Gene tree)
Gene ID: -
Gene Symbol: zgc:171927
Alias: -
Full Name: zgc:171927
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 3210 bases
Position: chrKV410892.1:2848433-2851642
Accession: ZDB-GENE-070822-21
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015008898	MMR_HSR1	PF01926.23	6.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015009023	-	642	-	ENSSFOP00015008898	213 (aa)	-	-
ENSSFOT00015009035	-	546	-	ENSSFOP00015008910	181 (aa)	-	-
ENSSFOT00015009047	-	537	-	ENSSFOP00015008922	178 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015005464's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015005464's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015005464	zgc:171927	76	40.373	ENSSFOG00015004941	rab41	75	40.373
ENSSFOG00015005464	zgc:171927	84	60.674	ENSSFOG00015006076	rab35	88	60.674
ENSSFOG00015005464	zgc:171927	79	57.396	ENSSFOG00015021754	rab13	85	57.396
ENSSFOG00015005464	zgc:171927	84	43.784	ENSSFOG00015004253	rab33a	83	43.548
ENSSFOG00015005464	zgc:171927	76	40.373	ENSSFOG00015011268	RAB41	77	40.373
ENSSFOG00015005464	zgc:171927	76	42.515	ENSSFOG00015024034	rab33ba	83	42.515
ENSSFOG00015005464	zgc:171927	87	34.872	ENSSFOG00015009566	si:dkey-13a21.4	88	34.872
ENSSFOG00015005464	zgc:171927	77	35.758	ENSSFOG00015011157	-	86	35.758
ENSSFOG00015005464	zgc:171927	93	80.303	ENSSFOG00015020836	rab1ba	98	80.303
ENSSFOG00015005464	zgc:171927	97	41.262	ENSSFOG00015008657	rab25a	96	41.262
ENSSFOG00015005464	zgc:171927	84	38.122	ENSSFOG00015020319	mras	93	38.122
ENSSFOG00015005464	zgc:171927	85	32.967	ENSSFOG00015012604	rab23	94	31.683
ENSSFOG00015005464	zgc:171927	57	33.083	ENSSFOG00015020500	arfrp1	65	33.083
ENSSFOG00015005464	zgc:171927	77	36.364	ENSSFOG00015006846	-	87	36.364
ENSSFOG00015005464	zgc:171927	99	45.833	ENSSFOG00015024042	rab11a	98	45.833
ENSSFOG00015005464	zgc:171927	77	36.585	ENSSFOG00015003051	hrasb	86	36.364
ENSSFOG00015005464	zgc:171927	98	51.442	ENSSFOG00015021448	-	99	51.442
ENSSFOG00015005464	zgc:171927	95	42.365	ENSSFOG00015009988	-	89	42.365
ENSSFOG00015005464	zgc:171927	92	81.726	ENSSFOG00015011140	-	96	81.726
ENSSFOG00015005464	zgc:171927	87	47.027	ENSSFOG00015009042	rab11bb	85	47.027
ENSSFOG00015005464	zgc:171927	78	37.647	ENSSFOG00015021180	RAB7A	82	37.647
ENSSFOG00015005464	zgc:171927	74	41.104	ENSSFOG00015016156	rab36	63	41.104
ENSSFOG00015005464	zgc:171927	67	32.168	ENSSFOG00015014423	rras2	76	32.168
ENSSFOG00015005464	zgc:171927	79	37.647	ENSSFOG00015009244	rab39bb	76	37.647
ENSSFOG00015005464	zgc:171927	76	33.742	ENSSFOG00015023790	rheb	88	33.742
ENSSFOG00015005464	zgc:171927	77	38.953	ENSSFOG00015005076	zgc:100918	82	38.953
ENSSFOG00015005464	zgc:171927	77	62.577	ENSSFOG00015006414	-	79	63.694
ENSSFOG00015005464	zgc:171927	92	81.122	ENSSFOG00015001293	rab1ab	97	81.122
ENSSFOG00015005464	zgc:171927	55	32.203	ENSSFOG00015021537	arl8a	61	32.203
ENSSFOG00015005464	zgc:171927	56	30.833	ENSSFOG00015019411	arl8ba	62	30.833
ENSSFOG00015005464	zgc:171927	55	30.252	ENSSFOG00015007064	arl4cb	59	30.252
ENSSFOG00015005464	zgc:171927	78	49.701	ENSSFOG00015017444	rab18a	66	50.617
ENSSFOG00015005464	zgc:171927	76	41.615	ENSSFOG00015002077	rab6a	77	41.615
ENSSFOG00015005464	zgc:171927	81	37.989	ENSSFOG00015011771	-	86	37.989
ENSSFOG00015005464	zgc:171927	81	39.205	ENSSFOG00015016000	-	81	39.205
ENSSFOG00015005464	zgc:171927	94	35.545	ENSSFOG00015004325	rab34a	79	35.545
ENSSFOG00015005464	zgc:171927	72	30.380	ENSSFOG00015017512	dnajc27	58	30.380
ENSSFOG00015005464	zgc:171927	79	51.786	ENSSFOG00015008618	rab11al	78	51.786
ENSSFOG00015005464	zgc:171927	97	40.865	ENSSFOG00015011318	-	96	40.865
ENSSFOG00015005464	zgc:171927	73	37.736	ENSSFOG00015003259	rab9a	75	37.736
ENSSFOG00015005464	zgc:171927	78	38.728	ENSSFOG00015020012	rab7a	82	38.728
ENSSFOG00015005464	zgc:171927	97	44.286	ENSSFOG00015000865	-	99	44.286
ENSSFOG00015005464	zgc:171927	91	41.538	ENSSFOG00015018421	rab39b	92	41.538
ENSSFOG00015005464	zgc:171927	77	42.857	ENSSFOG00015006175	zgc:101559	72	42.857
ENSSFOG00015005464	zgc:171927	85	39.785	ENSSFOG00015020112	rab33b	87	39.153
ENSSFOG00015005464	zgc:171927	76	40.994	ENSSFOG00015019202	RAB6B	77	40.994
ENSSFOG00015005464	zgc:171927	55	30.833	ENSSFOG00015018615	ARL4C	60	30.833
ENSSFOG00015005464	zgc:171927	97	37.037	ENSSFOG00015006245	-	96	37.037
ENSSFOG00015005464	zgc:171927	60	30.597	ENSSFOG00015007701	-	69	30.597
ENSSFOG00015005464	zgc:171927	72	35.948	ENSSFOG00015020738	rabl2	67	35.948
ENSSFOG00015005464	zgc:171927	98	38.028	ENSSFOG00015020732	rab42a	100	38.028
ENSSFOG00015005464	zgc:171927	97	40.865	ENSSFOG00015012785	rab14	96	40.865
ENSSFOG00015005464	zgc:171927	77	36.585	ENSSFOG00015023903	KRAS	87	36.364
ENSSFOG00015005464	zgc:171927	88	39.267	ENSSFOG00015012088	rab42	86	39.267
ENSSFOG00015005464	zgc:171927	76	41.615	ENSSFOG00015012085	rab22a	83	41.615
ENSSFOG00015005464	zgc:171927	73	38.365	ENSSFOG00015000053	rab9a	73	38.365
ENSSFOG00015005464	zgc:171927	94	42.786	ENSSFOG00015021115	-	89	42.786
ENSSFOG00015005464	zgc:171927	94	41.294	ENSSFOG00015014517	rab5a	89	41.294
ENSSFOG00015005464	zgc:171927	82	36.932	ENSSFOG00015005188	rab34	75	36.932
ENSSFOG00015005464	zgc:171927	95	36.538	ENSSFOG00015010492	rab9b	97	36.538
ENSSFOG00015005464	zgc:171927	81	33.714	ENSSFOG00015014992	rhebl1	92	33.714
ENSSFOG00015005464	zgc:171927	56	32.231	ENSSFOG00015014993	-	61	32.231
ENSSFOG00015005464	zgc:171927	72	31.013	ENSSFOG00015020074	DNAJC27	58	31.013
ENSSFOG00015005464	zgc:171927	79	50.296	ENSSFOG00015017296	rab15	79	50.296
ENSSFOG00015005464	zgc:171927	98	38.967	ENSSFOG00015003628	-	100	38.967
ENSSFOG00015005464	zgc:171927	56	30.833	ENSSFOG00015020131	arl8bb	66	30.833
ENSSFOG00015005464	zgc:171927	84	49.444	ENSSFOG00015015034	rab2a	99	44.762
ENSSFOG00015005464	zgc:171927	89	45.503	ENSSFOG00015015336	rab4a	88	45.503
ENSSFOG00015005464	zgc:171927	57	30.081	ENSSFOG00015015338	-	67	30.081

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015005464	zgc:171927	99	79.535	ENSAPOG00000004980	-	100	79.535	Acanthochromis_polyacanthus
ENSSFOG00015005464	zgc:171927	99	78.605	ENSACIG00000009006	zgc:171927	100	78.605	Amphilophus_citrinellus
ENSSFOG00015005464	zgc:171927	71	82.581	ENSAOCG00000013808	-	93	92.562	Amphiprion_ocellaris
ENSSFOG00015005464	zgc:171927	99	76.744	ENSAOCG00000024149	-	100	76.744	Amphiprion_ocellaris
ENSSFOG00015005464	zgc:171927	99	77.209	ENSAPEG00000022171	zgc:171927	99	77.209	Amphiprion_percula
ENSSFOG00015005464	zgc:171927	99	77.419	ENSATEG00000003430	zgc:171927	100	77.419	Anabas_testudineus
ENSSFOG00015005464	zgc:171927	99	77.934	ENSACLG00000013734	-	100	77.934	Astatotilapia_calliptera
ENSSFOG00015005464	zgc:171927	99	86.190	ENSAMXG00000039486	zgc:171927	100	86.190	Astyanax_mexicanus
ENSSFOG00015005464	zgc:171927	99	75.814	ENSCSEG00000014416	zgc:171927	100	75.814	Cynoglossus_semilaevis
ENSSFOG00015005464	zgc:171927	99	77.674	ENSCVAG00000009222	zgc:171927	100	77.674	Cyprinodon_variegatus
ENSSFOG00015005464	zgc:171927	99	86.667	ENSDARG00000033056	zgc:171927	100	86.667	Danio_rerio
ENSSFOG00015005464	zgc:171927	99	86.256	ENSELUG00000011680	zgc:171927	100	86.256	Esox_lucius
ENSSFOG00015005464	zgc:171927	99	77.674	ENSFHEG00000022176	zgc:171927	100	77.674	Fundulus_heteroclitus
ENSSFOG00015005464	zgc:171927	96	75.481	ENSGMOG00000004979	-	97	75.481	Gadus_morhua
ENSSFOG00015005464	zgc:171927	96	76.667	ENSGAFG00000015702	zgc:171927	84	76.667	Gambusia_affinis
ENSSFOG00015005464	zgc:171927	99	77.209	ENSGACG00000013401	zgc:171927	99	77.209	Gasterosteus_aculeatus
ENSSFOG00015005464	zgc:171927	99	77.934	ENSHBUG00000002397	-	100	77.934	Haplochromis_burtoni
ENSSFOG00015005464	zgc:171927	98	77.570	ENSKMAG00000009856	zgc:171927	100	77.570	Kryptolebias_marmoratus
ENSSFOG00015005464	zgc:171927	99	77.674	ENSLBEG00000005791	-	100	77.674	Labrus_bergylta
ENSSFOG00015005464	zgc:171927	96	77.143	ENSLBEG00000027226	-	89	77.143	Labrus_bergylta
ENSSFOG00015005464	zgc:171927	96	80.000	ENSLOCG00000014692	zgc:171927	96	80.000	Lepisosteus_oculatus
ENSSFOG00015005464	zgc:171927	99	77.209	ENSMAMG00000020135	zgc:171927	100	77.209	Mastacembelus_armatus
ENSSFOG00015005464	zgc:171927	99	77.934	ENSMZEG00005024685	-	100	77.934	Maylandia_zebra
ENSSFOG00015005464	zgc:171927	99	74.884	ENSMMOG00000009833	-	100	74.884	Mola_mola
ENSSFOG00015005464	zgc:171927	99	77.570	ENSMALG00000021129	zgc:171927	100	77.570	Monopterus_albus
ENSSFOG00015005464	zgc:171927	99	77.465	ENSNBRG00000006202	zgc:171927	100	77.465	Neolamprologus_brichardi
ENSSFOG00015005464	zgc:171927	99	77.103	ENSORLG00000000602	zgc:171927	100	77.103	Oryzias_latipes
ENSSFOG00015005464	zgc:171927	99	77.103	ENSORLG00020021071	zgc:171927	100	77.103	Oryzias_latipes_hni
ENSSFOG00015005464	zgc:171927	99	76.636	ENSORLG00015010098	zgc:171927	100	76.636	Oryzias_latipes_hsok
ENSSFOG00015005464	zgc:171927	99	78.605	ENSOMEG00000020594	zgc:171927	100	78.605	Oryzias_melastigma
ENSSFOG00015005464	zgc:171927	99	77.209	ENSPFOG00000013810	zgc:171927	99	77.209	Poecilia_formosa
ENSSFOG00015005464	zgc:171927	99	76.744	ENSPLAG00000005869	zgc:171927	100	76.744	Poecilia_latipinna
ENSSFOG00015005464	zgc:171927	99	77.209	ENSPMEG00000022350	zgc:171927	100	77.209	Poecilia_mexicana
ENSSFOG00015005464	zgc:171927	99	77.674	ENSPREG00000017517	zgc:171927	100	77.674	Poecilia_reticulata
ENSSFOG00015005464	zgc:171927	99	77.934	ENSPNYG00000007520	-	100	77.934	Pundamilia_nyererei
ENSSFOG00015005464	zgc:171927	99	87.143	ENSPNAG00000029574	zgc:171927	100	87.143	Pygocentrus_nattereri
ENSSFOG00015005464	zgc:171927	99	77.674	ENSSMAG00000004416	-	100	77.674	Scophthalmus_maximus
ENSSFOG00015005464	zgc:171927	99	78.140	ENSSDUG00000004445	zgc:171927	100	78.140	Seriola_dumerili
ENSSFOG00015005464	zgc:171927	99	78.140	ENSSLDG00000018024	zgc:171927	100	78.140	Seriola_lalandi_dorsalis
ENSSFOG00015005464	zgc:171927	99	79.070	ENSSPAG00000013533	zgc:171927	100	79.070	Stegastes_partitus
ENSSFOG00015005464	zgc:171927	99	77.209	ENSXCOG00000010695	zgc:171927	100	77.209	Xiphophorus_couchianus
ENSSFOG00015005464	zgc:171927	99	76.744	ENSXMAG00000004683	zgc:171927	100	76.744	Xiphophorus_maculatus