EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015006175 (Gene tree)
Gene ID: 108920462
Gene Symbol: zgc:101559
Alias: -
Full Name: ras-related protein Rab-33B-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 3556 bases
Position: chrKV411293.1:2183872-2187427
Accession: 108920462
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015009500	MMR_HSR1	PF01926.23	2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015009630	-	2376	XM_018729222	ENSSFOP00015009500	233 (aa)	XP_018584738	A0A1W4Y8X8

Gene Model

Click here to download ENSSFOG00015006175's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm04140	Autophagy - animal	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015006175's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015006175	zgc:101559	86	62.376	ENSSFOG00015020112	rab33b	93	62.376
ENSSFOG00015006175	zgc:101559	85	41.624	ENSSFOG00015006076	rab35	97	41.624
ENSSFOG00015006175	zgc:101559	84	39.286	ENSSFOG00015021115	-	87	39.286
ENSSFOG00015006175	zgc:101559	63	39.456	ENSSFOG00015017296	rab15	68	39.456
ENSSFOG00015006175	zgc:101559	77	37.778	ENSSFOG00015003051	hrasb	92	37.989
ENSSFOG00015006175	zgc:101559	85	35.545	ENSSFOG00015015336	rab4a	97	35.545
ENSSFOG00015006175	zgc:101559	70	37.195	ENSSFOG00015016156	rab36	63	37.195
ENSSFOG00015006175	zgc:101559	92	36.323	ENSSFOG00015018421	rab39b	99	36.792
ENSSFOG00015006175	zgc:101559	72	42.857	ENSSFOG00015005464	zgc:171927	77	42.857
ENSSFOG00015006175	zgc:101559	63	31.293	ENSSFOG00015023790	rheb	79	31.293
ENSSFOG00015006175	zgc:101559	66	40.523	ENSSFOG00015004941	rab41	70	40.523
ENSSFOG00015006175	zgc:101559	70	41.463	ENSSFOG00015021754	rab13	80	41.463
ENSSFOG00015006175	zgc:101559	72	44.643	ENSSFOG00015020836	rab1ba	81	44.643
ENSSFOG00015006175	zgc:101559	70	41.463	ENSSFOG00015000865	-	83	42.138
ENSSFOG00015006175	zgc:101559	80	42.781	ENSSFOG00015011140	-	89	42.781
ENSSFOG00015006175	zgc:101559	75	33.908	ENSSFOG00015020319	mras	95	31.683
ENSSFOG00015006175	zgc:101559	78	40.659	ENSSFOG00015024042	rab11a	84	40.659
ENSSFOG00015006175	zgc:101559	85	38.350	ENSSFOG00015003628	-	96	38.350
ENSSFOG00015006175	zgc:101559	85	37.374	ENSSFOG00015017444	rab18a	81	36.715
ENSSFOG00015006175	zgc:101559	88	35.437	ENSSFOG00015011268	RAB41	96	35.437
ENSSFOG00015006175	zgc:101559	64	37.333	ENSSFOG00015016000	-	69	37.333
ENSSFOG00015006175	zgc:101559	76	64.972	ENSSFOG00015004253	rab33a	79	64.607
ENSSFOG00015006175	zgc:101559	83	42.564	ENSSFOG00015021448	-	92	42.564
ENSSFOG00015006175	zgc:101559	80	42.781	ENSSFOG00015001293	rab1ab	90	42.781
ENSSFOG00015006175	zgc:101559	72	41.916	ENSSFOG00015012785	rab14	75	41.916
ENSSFOG00015006175	zgc:101559	82	30.769	ENSSFOG00015020074	DNAJC27	71	30.769
ENSSFOG00015006175	zgc:101559	82	39.583	ENSSFOG00015014517	rab5a	86	39.583
ENSSFOG00015006175	zgc:101559	74	39.306	ENSSFOG00015008618	rab11al	79	39.306
ENSSFOG00015006175	zgc:101559	74	41.618	ENSSFOG00015009042	rab11bb	78	41.618
ENSSFOG00015006175	zgc:101559	70	41.071	ENSSFOG00015021180	RAB7A	79	41.071
ENSSFOG00015006175	zgc:101559	64	33.987	ENSSFOG00015003259	rab9a	71	33.987
ENSSFOG00015006175	zgc:101559	67	37.580	ENSSFOG00015006846	-	97	36.224
ENSSFOG00015006175	zgc:101559	61	42.553	ENSSFOG00015005188	rab34	64	42.553
ENSSFOG00015006175	zgc:101559	63	33.333	ENSSFOG00015014992	rhebl1	79	33.333
ENSSFOG00015006175	zgc:101559	83	45.078	ENSSFOG00015006414	-	86	45.078
ENSSFOG00015006175	zgc:101559	77	35.754	ENSSFOG00015023903	KRAS	91	37.778
ENSSFOG00015006175	zgc:101559	81	40.415	ENSSFOG00015011771	-	88	40.415
ENSSFOG00015006175	zgc:101559	66	42.857	ENSSFOG00015015034	rab2a	75	41.463
ENSSFOG00015006175	zgc:101559	72	41.916	ENSSFOG00015011318	-	75	41.916
ENSSFOG00015006175	zgc:101559	88	33.654	ENSSFOG00015019202	RAB6B	98	33.654
ENSSFOG00015006175	zgc:101559	70	41.071	ENSSFOG00015020012	rab7a	79	41.071
ENSSFOG00015006175	zgc:101559	84	38.000	ENSSFOG00015020732	rab42a	92	38.000
ENSSFOG00015006175	zgc:101559	70	35.542	ENSSFOG00015020738	rabl2	84	33.505
ENSSFOG00015006175	zgc:101559	71	33.133	ENSSFOG00015012604	rab23	71	33.708
ENSSFOG00015006175	zgc:101559	77	37.222	ENSSFOG00015011157	-	92	37.430
ENSSFOG00015006175	zgc:101559	64	37.255	ENSSFOG00015010492	rab9b	75	37.255
ENSSFOG00015006175	zgc:101559	80	53.763	ENSSFOG00015024034	rab33ba	91	51.282
ENSSFOG00015006175	zgc:101559	74	31.429	ENSSFOG00015006245	-	77	31.429
ENSSFOG00015006175	zgc:101559	82	30.256	ENSSFOG00015017512	dnajc27	71	30.256
ENSSFOG00015006175	zgc:101559	85	33.168	ENSSFOG00015009566	si:dkey-13a21.4	96	33.168
ENSSFOG00015006175	zgc:101559	64	38.312	ENSSFOG00015000053	rab9a	70	38.312
ENSSFOG00015006175	zgc:101559	88	34.615	ENSSFOG00015002077	rab6a	98	34.615
ENSSFOG00015006175	zgc:101559	84	40.306	ENSSFOG00015009988	-	86	40.306
ENSSFOG00015006175	zgc:101559	85	38.095	ENSSFOG00015005076	zgc:100918	97	38.095
ENSSFOG00015006175	zgc:101559	83	34.673	ENSSFOG00015008657	rab25a	93	34.673
ENSSFOG00015006175	zgc:101559	73	38.012	ENSSFOG00015012085	rab22a	86	38.012
ENSSFOG00015006175	zgc:101559	64	40.789	ENSSFOG00015012088	rab42	68	40.789

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015006175	zgc:101559	100	71.674	ENSAPOG00000007503	zgc:101559	99	71.674	Acanthochromis_polyacanthus
ENSSFOG00015006175	zgc:101559	88	75.728	ENSACIG00000021459	zgc:101559	90	75.728	Amphilophus_citrinellus
ENSSFOG00015006175	zgc:101559	96	73.661	ENSAOCG00000024675	zgc:101559	96	73.661	Amphiprion_ocellaris
ENSSFOG00015006175	zgc:101559	96	73.661	ENSAPEG00000005176	zgc:101559	96	73.661	Amphiprion_percula
ENSSFOG00015006175	zgc:101559	97	70.796	ENSATEG00000007761	zgc:101559	97	70.796	Anabas_testudineus
ENSSFOG00015006175	zgc:101559	99	70.259	ENSACLG00000027006	zgc:101559	98	70.259	Astatotilapia_calliptera
ENSSFOG00015006175	zgc:101559	100	72.961	ENSAMXG00000040460	zgc:101559	93	72.961	Astyanax_mexicanus
ENSSFOG00015006175	zgc:101559	89	76.442	ENSCSEG00000006243	zgc:101559	88	76.442	Cynoglossus_semilaevis
ENSSFOG00015006175	zgc:101559	86	77.000	ENSCVAG00000019227	zgc:101559	85	77.000	Cyprinodon_variegatus
ENSSFOG00015006175	zgc:101559	97	73.568	ENSDARG00000003257	zgc:101559	97	73.568	Danio_rerio
ENSSFOG00015006175	zgc:101559	86	77.500	ENSFHEG00000011483	zgc:101559	85	77.500	Fundulus_heteroclitus
ENSSFOG00015006175	zgc:101559	87	79.310	ENSGMOG00000011665	zgc:101559	95	79.310	Gadus_morhua
ENSSFOG00015006175	zgc:101559	97	69.163	ENSGAFG00000021202	zgc:101559	97	69.163	Gambusia_affinis
ENSSFOG00015006175	zgc:101559	91	72.170	ENSGACG00000001725	zgc:101559	91	72.170	Gasterosteus_aculeatus
ENSSFOG00015006175	zgc:101559	100	69.528	ENSHBUG00000007827	zgc:101559	99	69.528	Haplochromis_burtoni
ENSSFOG00015006175	zgc:101559	86	74.500	ENSHCOG00000009133	zgc:101559	99	66.239	Hippocampus_comes
ENSSFOG00015006175	zgc:101559	96	70.852	ENSIPUG00000022394	zgc:101559	95	70.852	Ictalurus_punctatus
ENSSFOG00015006175	zgc:101559	88	77.451	ENSKMAG00000002862	zgc:101559	87	77.451	Kryptolebias_marmoratus
ENSSFOG00015006175	zgc:101559	100	72.532	ENSLBEG00000025798	zgc:101559	99	72.532	Labrus_bergylta
ENSSFOG00015006175	zgc:101559	93	66.818	ENSLACG00000011557	zgc:101559	95	66.818	Latimeria_chalumnae
ENSSFOG00015006175	zgc:101559	96	76.549	ENSLOCG00000005904	zgc:101559	94	76.549	Lepisosteus_oculatus
ENSSFOG00015006175	zgc:101559	100	69.099	ENSMAMG00000017431	zgc:101559	99	69.099	Mastacembelus_armatus
ENSSFOG00015006175	zgc:101559	100	69.528	ENSMZEG00005021778	zgc:101559	99	69.528	Maylandia_zebra
ENSSFOG00015006175	zgc:101559	100	67.382	ENSMMOG00000019779	zgc:101559	99	67.382	Mola_mola
ENSSFOG00015006175	zgc:101559	96	69.643	ENSMALG00000003712	zgc:101559	96	69.643	Monopterus_albus
ENSSFOG00015006175	zgc:101559	96	71.429	ENSNBRG00000002684	zgc:101559	96	71.429	Neolamprologus_brichardi
ENSSFOG00015006175	zgc:101559	100	69.528	ENSONIG00000006715	-	99	69.528	Oreochromis_niloticus
ENSSFOG00015006175	zgc:101559	100	69.362	ENSORLG00000030642	zgc:101559	100	69.362	Oryzias_latipes
ENSSFOG00015006175	zgc:101559	100	69.362	ENSORLG00020012685	zgc:101559	100	69.362	Oryzias_latipes_hni
ENSSFOG00015006175	zgc:101559	100	69.787	ENSORLG00015016047	zgc:101559	100	69.787	Oryzias_latipes_hsok
ENSSFOG00015006175	zgc:101559	97	70.175	ENSOMEG00000013128	zgc:101559	97	70.175	Oryzias_melastigma
ENSSFOG00015006175	zgc:101559	100	83.262	ENSPKIG00000013397	zgc:101559	98	83.262	Paramormyrops_kingsleyae
ENSSFOG00015006175	zgc:101559	89	75.481	ENSPFOG00000009101	-	88	75.481	Poecilia_formosa
ENSSFOG00015006175	zgc:101559	89	75.481	ENSPLAG00000020627	zgc:101559	88	75.481	Poecilia_latipinna
ENSSFOG00015006175	zgc:101559	89	75.000	ENSPMEG00000010152	zgc:101559	88	75.000	Poecilia_mexicana
ENSSFOG00015006175	zgc:101559	86	76.500	ENSPREG00000007017	zgc:101559	85	76.500	Poecilia_reticulata
ENSSFOG00015006175	zgc:101559	100	69.528	ENSPNYG00000012922	zgc:101559	99	69.528	Pundamilia_nyererei
ENSSFOG00015006175	zgc:101559	97	74.222	ENSPNAG00000017856	zgc:101559	97	74.222	Pygocentrus_nattereri
ENSSFOG00015006175	zgc:101559	96	69.778	ENSSMAG00000002229	zgc:101559	95	69.778	Scophthalmus_maximus
ENSSFOG00015006175	zgc:101559	100	70.815	ENSSDUG00000008151	zgc:101559	99	70.815	Seriola_dumerili
ENSSFOG00015006175	zgc:101559	100	70.386	ENSSLDG00000019214	zgc:101559	99	70.386	Seriola_lalandi_dorsalis
ENSSFOG00015006175	zgc:101559	100	71.245	ENSSPAG00000006404	zgc:101559	99	71.245	Stegastes_partitus
ENSSFOG00015006175	zgc:101559	89	74.396	ENSTRUG00000009903	zgc:101559	88	74.396	Takifugu_rubripes
ENSSFOG00015006175	zgc:101559	89	72.464	ENSTNIG00000015000	zgc:101559	88	72.464	Tetraodon_nigroviridis
ENSSFOG00015006175	zgc:101559	97	70.044	ENSXCOG00000018683	zgc:101559	97	70.044	Xiphophorus_couchianus
ENSSFOG00015006175	zgc:101559	97	70.485	ENSXMAG00000011171	zgc:101559	97	70.485	Xiphophorus_maculatus