EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015006348 (Gene tree)
Gene ID: 108923144
Gene Symbol: cstf2
Alias: CstF-64|fb11e07|wu:fb11e07|zgc:77730
Full Name: cleavage stimulation factor subunit 2
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 10736 bases
Position: chrKV410820.1:5246344-5257079
Accession: 108923144
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015009770	RRM_1	PF00076.22	1.5e-24	1	1
ENSSFOP00015009752	RRM_1	PF00076.22	1.6e-24	1	1
ENSSFOP00015009739	RRM_1	PF00076.22	1.6e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015009874	-	4407	XM_018733697	ENSSFOP00015009739	532 (aa)	XP_018589213	A0A1W4YLH4
ENSSFOT00015009905	-	4338	XM_018733703	ENSSFOP00015009770	509 (aa)	XP_018589219	A0A0P7U9D4
ENSSFOT00015009887	-	4398	XM_018733700	ENSSFOP00015009752	529 (aa)	XP_018589216	A0A1W4YLP7

Gene Model

Click here to download ENSSFOG00015006348's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015006348's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015006348	cstf2	98	63.471	ENSG00000101811	CSTF2	81	91.803	Homo_sapiens
ENSSFOG00015006348	cstf2	97	74.031	ENSAPOG00000005630	cstf2	96	74.280	Acanthochromis_polyacanthus
ENSSFOG00015006348	cstf2	98	63.201	ENSAMEG00000002082	CSTF2	99	63.201	Ailuropoda_melanoleuca
ENSSFOG00015006348	cstf2	97	70.428	ENSACIG00000012852	cstf2	96	68.441	Amphilophus_citrinellus
ENSSFOG00015006348	cstf2	97	73.398	ENSAOCG00000020905	cstf2	96	74.517	Amphiprion_ocellaris
ENSSFOG00015006348	cstf2	97	73.204	ENSAPEG00000006526	cstf2	96	74.517	Amphiprion_percula
ENSSFOG00015006348	cstf2	98	72.320	ENSATEG00000018186	cstf2	96	73.256	Anabas_testudineus
ENSSFOG00015006348	cstf2	95	62.988	ENSAPLG00000007255	CSTF2	98	61.785	Anas_platyrhynchos
ENSSFOG00015006348	cstf2	98	63.201	ENSANAG00000022342	CSTF2	99	63.787	Aotus_nancymaae
ENSSFOG00015006348	cstf2	97	72.921	ENSACLG00000000779	cstf2	93	74.566	Astatotilapia_calliptera
ENSSFOG00015006348	cstf2	69	100.000	ENSAMXG00000021477	cstf2	96	100.000	Astyanax_mexicanus
ENSSFOG00015006348	cstf2	98	63.727	ENSBTAG00000003547	CSTF2	99	63.855	Bos_taurus
ENSSFOG00015006348	cstf2	98	63.727	ENSCJAG00000004422	CSTF2	88	76.712	Callithrix_jacchus
ENSSFOG00015006348	cstf2	97	63.419	ENSCAFG00000017551	CSTF2	99	64.028	Canis_familiaris
ENSSFOG00015006348	cstf2	98	63.471	ENSCAFG00020007619	CSTF2	99	64.060	Canis_lupus_dingo
ENSSFOG00015006348	cstf2	98	63.394	ENSCHIG00000016994	CSTF2	99	63.511	Capra_hircus
ENSSFOG00015006348	cstf2	98	64.000	ENSTSYG00000006529	CSTF2	99	64.060	Carlito_syrichta
ENSSFOG00015006348	cstf2	98	63.471	ENSCPOG00000015255	CSTF2	84	92.810	Cavia_porcellus
ENSSFOG00015006348	cstf2	98	63.727	ENSCCAG00000032975	CSTF2	99	63.787	Cebus_capucinus
ENSSFOG00015006348	cstf2	98	63.471	ENSCATG00000022835	CSTF2	99	64.060	Cercocebus_atys
ENSSFOG00015006348	cstf2	98	63.366	ENSCLAG00000001904	CSTF2	85	91.026	Chinchilla_lanigera
ENSSFOG00015006348	cstf2	98	63.471	ENSCSAG00000010360	CSTF2	99	64.060	Chlorocebus_sabaeus
ENSSFOG00015006348	cstf2	98	71.596	ENSCPBG00000014293	CSTF2	87	72.398	Chrysemys_picta_bellii
ENSSFOG00015006348	cstf2	98	63.471	ENSCANG00000030612	CSTF2	99	64.060	Colobus_angolensis_palliatus
ENSSFOG00015006348	cstf2	97	62.500	ENSCGRG00001023023	Cstf2	91	69.930	Cricetulus_griseus_chok1gshd
ENSSFOG00015006348	cstf2	97	64.510	ENSCGRG00000003897	Cstf2	99	64.789	Cricetulus_griseus_crigri
ENSSFOG00015006348	cstf2	97	73.870	ENSCVAG00000005731	cstf2	96	73.425	Cyprinodon_variegatus
ENSSFOG00015006348	cstf2	97	76.541	ENSDARG00000090788	cstf2	92	100.000	Danio_rerio
ENSSFOG00015006348	cstf2	97	64.605	ENSDORG00000007195	Cstf2	83	93.377	Dipodomys_ordii
ENSSFOG00015006348	cstf2	76	89.831	ENSETEG00000004931	CSTF2	64	89.831	Echinops_telfairi
ENSSFOG00015006348	cstf2	98	63.591	ENSEASG00005001216	CSTF2	99	63.894	Equus_asinus_asinus
ENSSFOG00015006348	cstf2	98	63.591	ENSECAG00000009325	CSTF2	99	63.894	Equus_caballus
ENSSFOG00015006348	cstf2	98	63.306	ENSFCAG00000007000	CSTF2	99	63.894	Felis_catus
ENSSFOG00015006348	cstf2	90	61.552	ENSFALG00000003859	CSTF2	73	67.146	Ficedula_albicollis
ENSSFOG00015006348	cstf2	97	63.761	ENSFDAG00000002416	CSTF2	99	64.372	Fukomys_damarensis
ENSSFOG00015006348	cstf2	97	73.294	ENSFHEG00000017065	cstf2	93	73.462	Fundulus_heteroclitus
ENSSFOG00015006348	cstf2	97	66.862	ENSGMOG00000005145	cstf2	99	66.797	Gadus_morhua
ENSSFOG00015006348	cstf2	97	64.236	ENSGALG00000006760	CSTF2	99	62.543	Gallus_gallus
ENSSFOG00015006348	cstf2	82	90.000	ENSGAFG00000020027	cstf2	96	71.923	Gambusia_affinis
ENSSFOG00015006348	cstf2	98	68.260	ENSGACG00000017326	cstf2	97	82.397	Gasterosteus_aculeatus
ENSSFOG00015006348	cstf2	98	70.930	ENSGAGG00000006037	CSTF2	93	72.300	Gopherus_agassizii
ENSSFOG00015006348	cstf2	98	63.471	ENSGGOG00000022267	CSTF2	99	64.060	Gorilla_gorilla
ENSSFOG00015006348	cstf2	97	72.640	ENSHBUG00000016183	cstf2	93	74.088	Haplochromis_burtoni
ENSSFOG00015006348	cstf2	97	63.419	ENSHGLG00000000659	-	86	89.506	Heterocephalus_glaber_female
ENSSFOG00015006348	cstf2	97	56.424	ENSHGLG00000013455	-	99	55.729	Heterocephalus_glaber_female
ENSSFOG00015006348	cstf2	97	56.424	ENSHGLG00100015391	-	99	55.729	Heterocephalus_glaber_male
ENSSFOG00015006348	cstf2	97	63.419	ENSHGLG00100001130	-	86	89.506	Heterocephalus_glaber_male
ENSSFOG00015006348	cstf2	98	69.259	ENSHCOG00000005157	cstf2	97	71.622	Hippocampus_comes
ENSSFOG00015006348	cstf2	100	75.681	ENSIPUG00000017839	cstf2	98	75.651	Ictalurus_punctatus
ENSSFOG00015006348	cstf2	97	64.310	ENSSTOG00000023445	CSTF2	85	91.026	Ictidomys_tridecemlineatus
ENSSFOG00015006348	cstf2	97	63.481	ENSJJAG00000020507	Cstf2	85	91.026	Jaculus_jaculus
ENSSFOG00015006348	cstf2	50	86.590	ENSKMAG00000001068	cstf2	96	74.902	Kryptolebias_marmoratus
ENSSFOG00015006348	cstf2	98	63.606	ENSLACG00000015927	CSTF2	99	60.774	Latimeria_chalumnae
ENSSFOG00015006348	cstf2	99	95.522	ENSLOCG00000015300	cstf2	78	98.387	Lepisosteus_oculatus
ENSSFOG00015006348	cstf2	98	63.682	ENSLAFG00000000474	CSTF2	99	63.894	Loxodonta_africana
ENSSFOG00015006348	cstf2	98	63.471	ENSMFAG00000043888	CSTF2	99	64.060	Macaca_fascicularis
ENSSFOG00015006348	cstf2	98	64.000	ENSMMUG00000013008	CSTF2	99	63.894	Macaca_mulatta
ENSSFOG00015006348	cstf2	98	64.000	ENSMNEG00000041824	CSTF2	99	64.060	Macaca_nemestrina
ENSSFOG00015006348	cstf2	98	63.471	ENSMLEG00000036870	CSTF2	99	64.060	Mandrillus_leucophaeus
ENSSFOG00015006348	cstf2	95	71.968	ENSMAMG00000020364	cstf2	96	72.475	Mastacembelus_armatus
ENSSFOG00015006348	cstf2	97	72.921	ENSMZEG00005007200	cstf2	96	74.566	Maylandia_zebra
ENSSFOG00015006348	cstf2	88	75.949	ENSMGAG00000004139	CSTF2	74	85.484	Meleagris_gallopavo
ENSSFOG00015006348	cstf2	97	62.267	ENSMAUG00000000965	Cstf2	91	69.860	Mesocricetus_auratus
ENSSFOG00015006348	cstf2	98	64.500	ENSMICG00000014121	CSTF2	99	64.500	Microcebus_murinus
ENSSFOG00015006348	cstf2	97	63.058	ENSMOCG00000008081	Cstf2	93	70.507	Microtus_ochrogaster
ENSSFOG00015006348	cstf2	98	64.008	ENSMMOG00000000538	cstf2	96	64.397	Mola_mola
ENSSFOG00015006348	cstf2	98	64.060	ENSMODG00000011785	CSTF2	72	72.811	Monodelphis_domestica
ENSSFOG00015006348	cstf2	97	62.755	MGP_CAROLIEiJ_G0033383	Cstf2	84	92.258	Mus_caroli
ENSSFOG00015006348	cstf2	97	62.862	ENSMUSG00000031256	Cstf2	84	92.258	Mus_musculus
ENSSFOG00015006348	cstf2	97	62.862	MGP_PahariEiJ_G0031923	Cstf2	99	64.089	Mus_pahari
ENSSFOG00015006348	cstf2	97	62.862	MGP_SPRETEiJ_G0034548	Cstf2	84	92.258	Mus_spretus
ENSSFOG00015006348	cstf2	98	60.345	ENSMPUG00000002339	CSTF2	99	60.345	Mustela_putorius_furo
ENSSFOG00015006348	cstf2	98	60.597	ENSMLUG00000004598	CSTF2	97	60.539	Myotis_lucifugus
ENSSFOG00015006348	cstf2	97	63.140	ENSNGAG00000021985	Cstf2	99	63.481	Nannospalax_galili
ENSSFOG00015006348	cstf2	94	65.863	ENSNBRG00000021694	cstf2	100	67.540	Neolamprologus_brichardi
ENSSFOG00015006348	cstf2	98	63.471	ENSNLEG00000007510	CSTF2	99	64.060	Nomascus_leucogenys
ENSSFOG00015006348	cstf2	98	66.726	ENSMEUG00000011186	-	73	73.188	Notamacropus_eugenii
ENSSFOG00015006348	cstf2	98	64.198	ENSMEUG00000007875	-	99	64.865	Notamacropus_eugenii
ENSSFOG00015006348	cstf2	89	63.405	ENSMEUG00000014025	-	73	69.459	Notamacropus_eugenii
ENSSFOG00015006348	cstf2	82	73.333	ENSOPRG00000003106	CSTF2	82	75.635	Ochotona_princeps
ENSSFOG00015006348	cstf2	97	63.248	ENSODEG00000002059	CSTF2	99	63.683	Octodon_degus
ENSSFOG00015006348	cstf2	86	87.500	ENSONIG00000002631	cstf2	99	60.064	Oreochromis_niloticus
ENSSFOG00015006348	cstf2	87	88.235	ENSOANG00000004208	CSTF2	73	88.136	Ornithorhynchus_anatinus
ENSSFOG00015006348	cstf2	97	63.481	ENSOCUG00000010468	CSTF2	99	63.511	Oryctolagus_cuniculus
ENSSFOG00015006348	cstf2	97	69.038	ENSORLG00000001380	cstf2	96	71.735	Oryzias_latipes
ENSSFOG00015006348	cstf2	97	68.846	ENSORLG00020021917	cstf2	96	71.735	Oryzias_latipes_hni
ENSSFOG00015006348	cstf2	97	68.846	ENSORLG00015011996	cstf2	96	71.540	Oryzias_latipes_hsok
ENSSFOG00015006348	cstf2	97	72.045	ENSOMEG00000015507	cstf2	96	72.710	Oryzias_melastigma
ENSSFOG00015006348	cstf2	98	59.843	ENSOGAG00000011192	CSTF2	99	60.159	Otolemur_garnettii
ENSSFOG00015006348	cstf2	98	63.228	ENSOARG00000001022	CSTF2	99	63.511	Ovis_aries
ENSSFOG00015006348	cstf2	98	63.471	ENSPPAG00000031804	CSTF2	99	64.060	Pan_paniscus
ENSSFOG00015006348	cstf2	98	63.306	ENSPPRG00000022492	CSTF2	99	63.894	Panthera_pardus
ENSSFOG00015006348	cstf2	98	62.975	ENSPTIG00000009922	CSTF2	99	63.561	Panthera_tigris_altaica
ENSSFOG00015006348	cstf2	98	63.471	ENSPTRG00000022090	CSTF2	99	64.060	Pan_troglodytes
ENSSFOG00015006348	cstf2	98	63.471	ENSPANG00000002303	CSTF2	99	64.060	Papio_anubis
ENSSFOG00015006348	cstf2	100	91.132	ENSPKIG00000005033	cstf2	93	91.506	Paramormyrops_kingsleyae
ENSSFOG00015006348	cstf2	98	71.536	ENSPMGG00000006534	cstf2	96	72.957	Periophthalmus_magnuspinnatus
ENSSFOG00015006348	cstf2	97	62.521	ENSPEMG00000019415	Cstf2	99	62.692	Peromyscus_maniculatus_bairdii
ENSSFOG00015006348	cstf2	98	64.333	ENSPCIG00000002989	CSTF2	87	65.901	Phascolarctos_cinereus
ENSSFOG00015006348	cstf2	97	69.492	ENSPLAG00000011176	cstf2	96	69.720	Poecilia_latipinna
ENSSFOG00015006348	cstf2	97	68.738	ENSPMEG00000017743	cstf2	96	70.245	Poecilia_mexicana
ENSSFOG00015006348	cstf2	65	78.313	ENSPREG00000011481	cstf2	97	67.500	Poecilia_reticulata
ENSSFOG00015006348	cstf2	98	63.471	ENSPPYG00000020541	CSTF2	99	64.060	Pongo_abelii
ENSSFOG00015006348	cstf2	98	63.953	ENSPCOG00000027744	CSTF2	99	64.597	Propithecus_coquereli
ENSSFOG00015006348	cstf2	95	49.387	ENSPVAG00000008342	CSTF2	100	49.912	Pteropus_vampyrus
ENSSFOG00015006348	cstf2	52	93.151	ENSPNYG00000010852	cstf2	94	93.151	Pundamilia_nyererei
ENSSFOG00015006348	cstf2	98	78.839	ENSPNAG00000018887	cstf2	98	75.881	Pygocentrus_nattereri
ENSSFOG00015006348	cstf2	97	63.293	ENSRNOG00000048025	Cstf2	99	63.574	Rattus_norvegicus
ENSSFOG00015006348	cstf2	97	64.125	ENSRBIG00000030745	CSTF2	99	63.322	Rhinopithecus_bieti
ENSSFOG00015006348	cstf2	98	63.471	ENSRROG00000045042	CSTF2	99	64.060	Rhinopithecus_roxellana
ENSSFOG00015006348	cstf2	98	63.727	ENSSBOG00000021649	CSTF2	99	63.787	Saimiri_boliviensis_boliviensis
ENSSFOG00015006348	cstf2	88	90.196	ENSSHAG00000003681	CSTF2	77	89.831	Sarcophilus_harrisii
ENSSFOG00015006348	cstf2	97	68.972	ENSSMAG00000013463	cstf2	96	72.868	Scophthalmus_maximus
ENSSFOG00015006348	cstf2	82	78.082	ENSSPUG00000005288	-	92	79.110	Sphenodon_punctatus
ENSSFOG00015006348	cstf2	98	63.394	ENSSSCG00000012486	CSTF2	99	63.394	Sus_scrofa
ENSSFOG00015006348	cstf2	97	63.311	ENSTGUG00000002253	CSTF2	99	61.386	Taeniopygia_guttata
ENSSFOG00015006348	cstf2	98	73.034	ENSTNIG00000016860	cstf2	99	73.603	Tetraodon_nigroviridis
ENSSFOG00015006348	cstf2	97	62.969	ENSTTRG00000013556	CSTF2	99	63.574	Tursiops_truncatus
ENSSFOG00015006348	cstf2	98	63.201	ENSUAMG00000026605	CSTF2	99	63.201	Ursus_americanus
ENSSFOG00015006348	cstf2	98	67.257	ENSUMAG00000012417	CSTF2	99	77.113	Ursus_maritimus
ENSSFOG00015006348	cstf2	75	74.260	ENSVPAG00000006466	CSTF2	67	73.373	Vicugna_pacos
ENSSFOG00015006348	cstf2	97	63.419	ENSVVUG00000004717	CSTF2	99	64.028	Vulpes_vulpes
ENSSFOG00015006348	cstf2	94	82.090	ENSXETG00000009642	cstf2	84	85.484	Xenopus_tropicalis
ENSSFOG00015006348	cstf2	68	98.485	ENSXCOG00000016436	cstf2	91	98.485	Xiphophorus_couchianus
ENSSFOG00015006348	cstf2	67	74.930	ENSXMAG00000013524	cstf2	97	68.108	Xiphophorus_maculatus