EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015006475 (Gene tree)
Gene ID: -
Gene Symbol: tnrc6c1
Alias: FLJ20015|KIAA1582
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 29824 bases
Position: chrKV411197.1:7992026-8021849
Accession: 108940156
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015010178	Ago_hook	PF10427.9	5.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015010319	-	5319	XM_018762114	ENSSFOP00015010178	1772 (aa)	XP_018617630	-

Gene Model

Click here to download ENSSFOG00015006475's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015006475's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015006475	tnrc6c1	75	40.117	ENSSFOG00015008920	tnrc6a	52	42.327
ENSSFOG00015006475	tnrc6c1	91	62.554	ENSSFOG00015004735	-	100	66.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015006475	tnrc6c1	99	51.952	ENSG00000078687	TNRC6C	100	57.759	Homo_sapiens
ENSSFOG00015006475	tnrc6c1	99	59.884	ENSAPOG00000019749	tnrc6c1	99	61.620	Acanthochromis_polyacanthus
ENSSFOG00015006475	tnrc6c1	95	50.367	ENSAMEG00000013756	TNRC6C	70	65.140	Ailuropoda_melanoleuca
ENSSFOG00015006475	tnrc6c1	92	77.325	ENSAOCG00000023968	tnrc6c1	99	80.000	Amphiprion_ocellaris
ENSSFOG00015006475	tnrc6c1	96	60.704	ENSAPEG00000009020	tnrc6c1	99	61.830	Amphiprion_percula
ENSSFOG00015006475	tnrc6c1	94	67.427	ENSAPLG00000005456	TNRC6C	93	58.085	Anas_platyrhynchos
ENSSFOG00015006475	tnrc6c1	89	65.217	ENSANAG00000021554	TNRC6C	78	65.217	Aotus_nancymaae
ENSSFOG00015006475	tnrc6c1	96	56.091	ENSACLG00000000424	tnrc6c1	99	57.143	Astatotilapia_calliptera
ENSSFOG00015006475	tnrc6c1	89	52.129	ENSBTAG00000018658	TNRC6C	93	57.536	Bos_taurus
ENSSFOG00015006475	tnrc6c1	98	51.403	ENSCJAG00000019431	TNRC6C	74	59.852	Callithrix_jacchus
ENSSFOG00015006475	tnrc6c1	98	51.211	ENSCAFG00000005224	TNRC6C	91	57.552	Canis_familiaris
ENSSFOG00015006475	tnrc6c1	98	51.947	ENSCAFG00020006661	TNRC6C	92	57.163	Canis_lupus_dingo
ENSSFOG00015006475	tnrc6c1	99	51.563	ENSCHIG00000026004	TNRC6C	92	57.469	Capra_hircus
ENSSFOG00015006475	tnrc6c1	92	52.755	ENSTSYG00000005403	TNRC6C	91	58.118	Carlito_syrichta
ENSSFOG00015006475	tnrc6c1	91	55.316	ENSCAPG00000007307	TNRC6C	92	54.235	Cavia_aperea
ENSSFOG00015006475	tnrc6c1	73	59.597	ENSCPOG00000000467	TNRC6C	93	58.256	Cavia_porcellus
ENSSFOG00015006475	tnrc6c1	99	51.602	ENSCCAG00000030524	TNRC6C	79	58.398	Cebus_capucinus
ENSSFOG00015006475	tnrc6c1	99	51.702	ENSCATG00000033135	TNRC6C	93	57.641	Cercocebus_atys
ENSSFOG00015006475	tnrc6c1	99	52.488	ENSCLAG00000011139	TNRC6C	69	58.660	Chinchilla_lanigera
ENSSFOG00015006475	tnrc6c1	99	51.859	ENSCSAG00000005167	TNRC6C	91	57.572	Chlorocebus_sabaeus
ENSSFOG00015006475	tnrc6c1	69	69.159	ENSCHOG00000000088	TNRC6C	60	68.720	Choloepus_hoffmanni
ENSSFOG00015006475	tnrc6c1	95	53.767	ENSCPBG00000027960	TNRC6C	77	60.157	Chrysemys_picta_bellii
ENSSFOG00015006475	tnrc6c1	99	51.626	ENSCANG00000041771	TNRC6C	92	57.321	Colobus_angolensis_palliatus
ENSSFOG00015006475	tnrc6c1	99	51.191	ENSCGRG00001022686	Tnrc6c	78	57.214	Cricetulus_griseus_chok1gshd
ENSSFOG00015006475	tnrc6c1	99	51.399	ENSCGRG00000018041	Tnrc6c	78	57.214	Cricetulus_griseus_crigri
ENSSFOG00015006475	tnrc6c1	98	59.108	ENSCSEG00000012744	tnrc6c1	100	58.974	Cynoglossus_semilaevis
ENSSFOG00015006475	tnrc6c1	92	79.200	ENSDARG00000076847	tnrc6c1	98	67.318	Danio_rerio
ENSSFOG00015006475	tnrc6c1	100	51.310	ENSDNOG00000003247	TNRC6C	92	56.759	Dasypus_novemcinctus
ENSSFOG00015006475	tnrc6c1	99	50.025	ENSDORG00000004558	Tnrc6c	78	56.132	Dipodomys_ordii
ENSSFOG00015006475	tnrc6c1	83	57.702	ENSETEG00000005527	TNRC6C	83	58.478	Echinops_telfairi
ENSSFOG00015006475	tnrc6c1	92	51.394	ENSEASG00005004799	TNRC6C	79	58.652	Equus_asinus_asinus
ENSSFOG00015006475	tnrc6c1	99	52.488	ENSECAG00000012486	TNRC6C	93	57.143	Equus_caballus
ENSSFOG00015006475	tnrc6c1	90	58.451	ENSEEUG00000010008	TNRC6C	72	59.331	Erinaceus_europaeus
ENSSFOG00015006475	tnrc6c1	99	50.643	ENSFCAG00000028358	TNRC6C	92	56.895	Felis_catus
ENSSFOG00015006475	tnrc6c1	92	51.370	ENSFALG00000000848	TNRC6C	78	57.319	Ficedula_albicollis
ENSSFOG00015006475	tnrc6c1	94	52.577	ENSFDAG00000010368	TNRC6C	91	58.685	Fukomys_damarensis
ENSSFOG00015006475	tnrc6c1	96	57.722	ENSFHEG00000002936	tnrc6c1	99	58.151	Fundulus_heteroclitus
ENSSFOG00015006475	tnrc6c1	96	52.568	ENSGALG00000001725	TNRC6C	77	60.995	Gallus_gallus
ENSSFOG00015006475	tnrc6c1	100	57.441	ENSGAFG00000019019	tnrc6c1	100	59.777	Gambusia_affinis
ENSSFOG00015006475	tnrc6c1	99	57.013	ENSGACG00000012320	tnrc6c1	98	56.775	Gasterosteus_aculeatus
ENSSFOG00015006475	tnrc6c1	95	53.925	ENSGAGG00000022043	TNRC6C	74	60.114	Gopherus_agassizii
ENSSFOG00015006475	tnrc6c1	99	52.000	ENSGGOG00000011304	TNRC6C	91	57.631	Gorilla_gorilla
ENSSFOG00015006475	tnrc6c1	99	58.492	ENSHBUG00000010846	tnrc6c1	100	60.622	Haplochromis_burtoni
ENSSFOG00015006475	tnrc6c1	100	65.198	ENSIPUG00000000818	tnrc6c1	99	65.502	Ictalurus_punctatus
ENSSFOG00015006475	tnrc6c1	77	57.015	ENSSTOG00000009101	TNRC6C	91	58.136	Ictidomys_tridecemlineatus
ENSSFOG00015006475	tnrc6c1	99	55.515	ENSKMAG00000021023	tnrc6c1	99	55.935	Kryptolebias_marmoratus
ENSSFOG00015006475	tnrc6c1	100	71.010	ENSLOCG00000013377	tnrc6c1	98	71.560	Lepisosteus_oculatus
ENSSFOG00015006475	tnrc6c1	99	51.969	ENSLAFG00000011122	TNRC6C	74	52.970	Loxodonta_africana
ENSSFOG00015006475	tnrc6c1	99	51.752	ENSMFAG00000043943	TNRC6C	93	57.641	Macaca_fascicularis
ENSSFOG00015006475	tnrc6c1	99	51.960	ENSMMUG00000011924	TNRC6C	90	57.641	Macaca_mulatta
ENSSFOG00015006475	tnrc6c1	99	51.752	ENSMNEG00000030405	TNRC6C	93	57.252	Macaca_nemestrina
ENSSFOG00015006475	tnrc6c1	99	51.752	ENSMLEG00000033436	TNRC6C	93	57.641	Mandrillus_leucophaeus
ENSSFOG00015006475	tnrc6c1	99	58.494	ENSMAMG00000023613	tnrc6c1	99	60.168	Mastacembelus_armatus
ENSSFOG00015006475	tnrc6c1	99	58.395	ENSMZEG00005010920	tnrc6c1	99	58.704	Maylandia_zebra
ENSSFOG00015006475	tnrc6c1	90	52.803	ENSMAUG00000021618	Tnrc6c	79	57.393	Mesocricetus_auratus
ENSSFOG00015006475	tnrc6c1	99	51.301	ENSMICG00000003952	TNRC6C	92	56.994	Microcebus_murinus
ENSSFOG00015006475	tnrc6c1	99	51.200	ENSMOCG00000015879	Tnrc6c	75	58.196	Microtus_ochrogaster
ENSSFOG00015006475	tnrc6c1	92	60.592	ENSMMOG00000005203	tnrc6c1	100	60.708	Mola_mola
ENSSFOG00015006475	tnrc6c1	99	50.958	ENSMPUG00000013348	TNRC6C	89	57.153	Mustela_putorius_furo
ENSSFOG00015006475	tnrc6c1	99	50.100	ENSMLUG00000014431	TNRC6C	70	55.790	Myotis_lucifugus
ENSSFOG00015006475	tnrc6c1	99	51.812	ENSNGAG00000012203	Tnrc6c	69	58.120	Nannospalax_galili
ENSSFOG00015006475	tnrc6c1	96	59.195	ENSNBRG00000005344	tnrc6c1	99	59.755	Neolamprologus_brichardi
ENSSFOG00015006475	tnrc6c1	99	50.528	ENSNLEG00000000047	TNRC6C	91	55.034	Nomascus_leucogenys
ENSSFOG00015006475	tnrc6c1	89	64.395	ENSMEUG00000005104	TNRC6C	71	63.714	Notamacropus_eugenii
ENSSFOG00015006475	tnrc6c1	92	52.702	ENSODEG00000012499	TNRC6C	78	58.429	Octodon_degus
ENSSFOG00015006475	tnrc6c1	92	60.224	ENSONIG00000002210	tnrc6c1	100	60.859	Oreochromis_niloticus
ENSSFOG00015006475	tnrc6c1	78	80.000	ENSOANG00000009758	-	71	56.667	Ornithorhynchus_anatinus
ENSSFOG00015006475	tnrc6c1	79	59.729	ENSOCUG00000006122	TNRC6C	94	59.880	Oryctolagus_cuniculus
ENSSFOG00015006475	tnrc6c1	96	56.872	ENSORLG00000009837	tnrc6c1	99	78.810	Oryzias_latipes
ENSSFOG00015006475	tnrc6c1	96	55.823	ENSORLG00020016510	tnrc6c1	100	58.133	Oryzias_latipes_hni
ENSSFOG00015006475	tnrc6c1	78	51.482	ENSORLG00015000171	tnrc6c1	98	52.686	Oryzias_latipes_hsok
ENSSFOG00015006475	tnrc6c1	96	57.510	ENSOMEG00000000357	tnrc6c1	99	57.842	Oryzias_melastigma
ENSSFOG00015006475	tnrc6c1	77	54.913	ENSOGAG00000007197	TNRC6C	94	55.625	Otolemur_garnettii
ENSSFOG00015006475	tnrc6c1	95	48.189	ENSOARG00000006041	TNRC6C	91	54.685	Ovis_aries
ENSSFOG00015006475	tnrc6c1	99	51.902	ENSPPAG00000027160	TNRC6C	91	57.781	Pan_paniscus
ENSSFOG00015006475	tnrc6c1	99	50.544	ENSPPRG00000018881	TNRC6C	92	56.965	Panthera_pardus
ENSSFOG00015006475	tnrc6c1	85	60.214	ENSPTIG00000008791	TNRC6C	85	60.287	Panthera_tigris_altaica
ENSSFOG00015006475	tnrc6c1	99	51.902	ENSPTRG00000009699	TNRC6C	91	57.851	Pan_troglodytes
ENSSFOG00015006475	tnrc6c1	99	51.752	ENSPANG00000019994	TNRC6C	93	57.252	Papio_anubis
ENSSFOG00015006475	tnrc6c1	92	71.021	ENSPKIG00000005428	tnrc6c1	100	71.496	Paramormyrops_kingsleyae
ENSSFOG00015006475	tnrc6c1	94	53.442	ENSPSIG00000018069	TNRC6C	72	61.699	Pelodiscus_sinensis
ENSSFOG00015006475	tnrc6c1	80	76.744	ENSPMGG00000022911	tnrc6c1	98	69.796	Periophthalmus_magnuspinnatus
ENSSFOG00015006475	tnrc6c1	98	51.028	ENSPEMG00000009785	Tnrc6c	74	56.422	Peromyscus_maniculatus_bairdii
ENSSFOG00015006475	tnrc6c1	100	57.291	ENSPFOG00000012560	tnrc6c1	99	58.487	Poecilia_formosa
ENSSFOG00015006475	tnrc6c1	92	59.765	ENSPLAG00000021055	tnrc6c1	100	60.153	Poecilia_latipinna
ENSSFOG00015006475	tnrc6c1	99	52.161	ENSPPYG00000008679	TNRC6C	89	57.851	Pongo_abelii
ENSSFOG00015006475	tnrc6c1	66	69.142	ENSPCAG00000012510	TNRC6C	61	69.333	Procavia_capensis
ENSSFOG00015006475	tnrc6c1	92	52.974	ENSPCOG00000021451	TNRC6C	93	57.451	Propithecus_coquereli
ENSSFOG00015006475	tnrc6c1	69	71.667	ENSPVAG00000002008	TNRC6C	71	71.667	Pteropus_vampyrus
ENSSFOG00015006475	tnrc6c1	96	58.082	ENSPNYG00000014477	tnrc6c1	100	60.340	Pundamilia_nyererei
ENSSFOG00015006475	tnrc6c1	77	56.522	ENSRNOG00000022395	Tnrc6c	78	57.646	Rattus_norvegicus
ENSSFOG00015006475	tnrc6c1	99	51.902	ENSRBIG00000027777	TNRC6C	93	57.799	Rhinopithecus_bieti
ENSSFOG00015006475	tnrc6c1	99	51.852	ENSRROG00000042912	TNRC6C	93	57.730	Rhinopithecus_roxellana
ENSSFOG00015006475	tnrc6c1	99	51.958	ENSSBOG00000023981	TNRC6C	79	57.271	Saimiri_boliviensis_boliviensis
ENSSFOG00015006475	tnrc6c1	50	67.375	ENSSHAG00000018330	-	100	66.950	Sarcophilus_harrisii
ENSSFOG00015006475	tnrc6c1	96	59.149	ENSSMAG00000012761	tnrc6c1	100	59.417	Scophthalmus_maximus
ENSSFOG00015006475	tnrc6c1	97	60.730	ENSSDUG00000002366	tnrc6c1	99	60.714	Seriola_dumerili
ENSSFOG00015006475	tnrc6c1	92	61.905	ENSSLDG00000025613	tnrc6c1	100	61.880	Seriola_lalandi_dorsalis
ENSSFOG00015006475	tnrc6c1	65	71.901	ENSSARG00000006816	TNRC6C	66	71.901	Sorex_araneus
ENSSFOG00015006475	tnrc6c1	80	86.486	ENSSPUG00000007341	TNRC6C	90	61.765	Sphenodon_punctatus
ENSSFOG00015006475	tnrc6c1	98	59.560	ENSSPAG00000014977	tnrc6c1	98	61.002	Stegastes_partitus
ENSSFOG00015006475	tnrc6c1	91	52.834	ENSSSCG00000034373	TNRC6C	74	61.165	Sus_scrofa
ENSSFOG00015006475	tnrc6c1	94	53.127	ENSTGUG00000007733	TNRC6C	75	60.143	Taeniopygia_guttata
ENSSFOG00015006475	tnrc6c1	97	57.769	ENSTRUG00000011685	tnrc6c1	100	57.579	Takifugu_rubripes
ENSSFOG00015006475	tnrc6c1	95	56.780	ENSTNIG00000005273	tnrc6c1	100	63.732	Tetraodon_nigroviridis
ENSSFOG00015006475	tnrc6c1	65	51.637	ENSTBEG00000005046	TNRC6C	96	52.300	Tupaia_belangeri
ENSSFOG00015006475	tnrc6c1	94	53.449	ENSTTRG00000010828	TNRC6C	76	59.165	Tursiops_truncatus
ENSSFOG00015006475	tnrc6c1	99	49.488	ENSUMAG00000013614	TNRC6C	93	55.089	Ursus_maritimus
ENSSFOG00015006475	tnrc6c1	51	54.575	ENSVPAG00000006765	-	99	55.556	Vicugna_pacos
ENSSFOG00015006475	tnrc6c1	92	51.730	ENSVVUG00000015268	TNRC6C	92	55.283	Vulpes_vulpes
ENSSFOG00015006475	tnrc6c1	100	57.449	ENSXMAG00000025971	tnrc6c1	100	59.577	Xiphophorus_maculatus