EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSFOG00015006662 (Gene tree)
Gene ID
108940707
Gene Symbol
pabpc1a
Alias
-
Full Name
polyadenylate-binding protein 1-like
Gene Type
protein_coding
Species
Scleropages_formosus
Status
putative
Strand
Plus strand
Length
7264 bases
Position
chrKV411212.1:5513082-5520345
Accession
108940707
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSFOP00015010294PABPPF00658.182.7e-3211
ENSSFOP00015010294RRM_5PF13893.65.7e-0711
ENSSFOP00015010294RRM_1PF00076.221.6e-9114
ENSSFOP00015010294RRM_1PF00076.221.6e-9124
ENSSFOP00015010294RRM_1PF00076.221.6e-9134
ENSSFOP00015010294RRM_1PF00076.221.6e-9144
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSFOT00015010435-4311XM_018763036ENSSFOP00015010294634 (aa)XP_018618552A0A1W5ASG6
Gene Model
Click here to download ENSSFOG00015006662's gene model file
Pathways
Pathway IDPathway NameSource
sfm03013RNA transportKEGG
sfm03015mRNA surveillance pathwayKEGG
sfm03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015006662's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSFOG00015006662pabpc1a5635.227ENSSFOG00015023817-6135.227
ENSSFOG00015006662pabpc1a5832.484ENSSFOG00015017503-9232.484
ENSSFOG00015006662pabpc1a5879.769ENSSFOG00015019668-6679.769
ENSSFOG00015006662pabpc1a5733.113ENSSFOG00015021786ELAVL19033.113
ENSSFOG00015006662pabpc1a7330.435ENSSFOG00015008776tia18830.435
ENSSFOG00015006662pabpc1a5930.719ENSSFOG00015023630elavl38930.719
ENSSFOG00015006662pabpc1a5831.034ENSSFOG00015008583ncl5431.034
ENSSFOG00015006662pabpc1a9893.258ENSSFOG00015006617-10092.902
ENSSFOG00015006662pabpc1a10090.852ENSSFOG00015002752-10090.852
ENSSFOG00015006662pabpc1a5832.323ENSSFOG00015019353celf15734.091
ENSSFOG00015006662pabpc1a6137.349ENSSFOG00015010874celf46937.349
ENSSFOG00015006662pabpc1a5934.737ENSSFOG00015006642-7234.737
ENSSFOG00015006662pabpc1a9874.010ENSSFOG00015017304pabpc1l9973.851
ENSSFOG00015006662pabpc1a5937.349ENSSFOG00015001257ELAVL29937.349
ENSSFOG00015006662pabpc1a5936.145ENSSFOG00015015838elavl48536.145
ENSSFOG00015006662pabpc1a7431.183ENSSFOG00015018496-8530.612
ENSSFOG00015006662pabpc1a5937.349ENSSFOG00015018252elavl28537.349
ENSSFOG00015006662pabpc1a9976.585ENSSFOG00015023514pabpc49976.585
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSFOG00015006662pabpc1a5880.102ENSG00000184388PABPC1L2B9880.102Homo_sapiens
ENSSFOG00015006662pabpc1a5880.102ENSG00000186288PABPC1L2A9880.102Homo_sapiens
ENSSFOG00015006662pabpc1a10090.267ENSAPOG00000015105pabpc1a10089.953Acanthochromis_polyacanthus
ENSSFOG00015006662pabpc1a10091.811ENSAPOG00000017776pabpc1b10091.811Acanthochromis_polyacanthus
ENSSFOG00015006662pabpc1a5980.102ENSAMEG00000019441-9880.102Ailuropoda_melanoleuca
ENSSFOG00015006662pabpc1a10089.796ENSACIG00000004685pabpc1a10089.639Amphilophus_citrinellus
ENSSFOG00015006662pabpc1a10086.072ENSACIG00000018366pabpc1b10086.072Amphilophus_citrinellus
ENSSFOG00015006662pabpc1a10089.796ENSAOCG00000011656pabpc1a10089.796Amphiprion_ocellaris
ENSSFOG00015006662pabpc1a10091.024ENSAOCG00000019839pabpc1b10091.024Amphiprion_ocellaris
ENSSFOG00015006662pabpc1a10089.796ENSAPEG00000006963pabpc1a10089.796Amphiprion_percula
ENSSFOG00015006662pabpc1a10091.024ENSAPEG00000010435pabpc1b10091.024Amphiprion_percula
ENSSFOG00015006662pabpc1a10089.937ENSATEG00000012917pabpc1b10089.937Anabas_testudineus
ENSSFOG00015006662pabpc1a10090.110ENSATEG00000024852pabpc1a10090.110Anabas_testudineus
ENSSFOG00015006662pabpc1a5880.102ENSANAG00000019429-9880.102Aotus_nancymaae
ENSSFOG00015006662pabpc1a5880.102ENSANAG00000019431-9880.102Aotus_nancymaae
ENSSFOG00015006662pabpc1a10090.709ENSACLG00000014335pabpc1b10090.709Astatotilapia_calliptera
ENSSFOG00015006662pabpc1a9991.116ENSACLG00000009399pabpc1a10091.116Astatotilapia_calliptera
ENSSFOG00015006662pabpc1a10091.024ENSAMXG00000008599pabpc1b10090.866Astyanax_mexicanus
ENSSFOG00015006662pabpc1a5979.024ENSBTAG00000050902-9879.024Bos_taurus
ENSSFOG00015006662pabpc1a5977.033ENSBTAG00000052491-9877.033Bos_taurus
ENSSFOG00015006662pabpc1a5880.102ENSCJAG00000041326-9880.102Callithrix_jacchus
ENSSFOG00015006662pabpc1a5979.024ENSCAFG00020002052-9879.024Canis_lupus_dingo
ENSSFOG00015006662pabpc1a5880.102ENSCHIG00000006283-9880.102Capra_hircus
ENSSFOG00015006662pabpc1a5880.102ENSCHIG00000011138-9880.102Capra_hircus
ENSSFOG00015006662pabpc1a5880.102ENSTSYG00000001775-9880.102Carlito_syrichta
ENSSFOG00015006662pabpc1a5980.102ENSCPOG00000009525-9880.102Cavia_porcellus
ENSSFOG00015006662pabpc1a5880.102ENSCCAG00000031524-9880.102Cebus_capucinus
ENSSFOG00015006662pabpc1a5880.102ENSCATG00000042826-9880.102Cercocebus_atys
ENSSFOG00015006662pabpc1a5880.102ENSCATG00000043125-9880.102Cercocebus_atys
ENSSFOG00015006662pabpc1a5878.061ENSCLAG00000017412-9878.061Chinchilla_lanigera
ENSSFOG00015006662pabpc1a5878.061ENSCLAG00000017409-9878.061Chinchilla_lanigera
ENSSFOG00015006662pabpc1a5980.102ENSCSAG00000000102-9880.102Chlorocebus_sabaeus
ENSSFOG00015006662pabpc1a5880.110ENSCGRG00001023387-9677.835Cricetulus_griseus_chok1gshd
ENSSFOG00015006662pabpc1a10087.402ENSCSEG00000015241-10087.402Cynoglossus_semilaevis
ENSSFOG00015006662pabpc1a9989.348ENSCSEG00000013324pabpc1a9989.348Cynoglossus_semilaevis
ENSSFOG00015006662pabpc1a10089.639ENSCVAG00000021872pabpc1a10089.482Cyprinodon_variegatus
ENSSFOG00015006662pabpc1a10088.522ENSCVAG00000005489pabpc1b10088.522Cyprinodon_variegatus
ENSSFOG00015006662pabpc1a10089.921ENSDARG00000021140pabpc1b9993.617Danio_rerio
ENSSFOG00015006662pabpc1a10091.509ENSDARG00000017219pabpc1a10091.352Danio_rerio
ENSSFOG00015006662pabpc1a5980.423ENSDNOG00000030926-9878.571Dasypus_novemcinctus
ENSSFOG00015006662pabpc1a5877.551ENSDORG00000011362-9877.551Dipodomys_ordii
ENSSFOG00015006662pabpc1a5978.641ENSEASG00005010399-9878.641Equus_asinus_asinus
ENSSFOG00015006662pabpc1a5978.641ENSECAG00000002620-9878.641Equus_caballus
ENSSFOG00015006662pabpc1a5975.510ENSEEUG00000008203-9875.510Erinaceus_europaeus
ENSSFOG00015006662pabpc1a5959.052ENSELUG00000005389-9759.052Esox_lucius
ENSSFOG00015006662pabpc1a9990.394ENSELUG00000003614pabpc1a10090.236Esox_lucius
ENSSFOG00015006662pabpc1a10087.284ENSELUG00000015062-10087.284Esox_lucius
ENSSFOG00015006662pabpc1a5880.102ENSFCAG00000039701-9880.102Felis_catus
ENSSFOG00015006662pabpc1a5980.102ENSFDAG00000005484-9880.102Fukomys_damarensis
ENSSFOG00015006662pabpc1a10089.921ENSFHEG00000008186pabpc1b10089.921Fundulus_heteroclitus
ENSSFOG00015006662pabpc1a10089.796ENSFHEG00000018979pabpc1a10089.796Fundulus_heteroclitus
ENSSFOG00015006662pabpc1a10081.493ENSGMOG00000002448-10081.493Gadus_morhua
ENSSFOG00015006662pabpc1a9988.527ENSGMOG00000013448pabpc1a9988.527Gadus_morhua
ENSSFOG00015006662pabpc1a10090.866ENSGAFG00000010193pabpc1b10090.866Gambusia_affinis
ENSSFOG00015006662pabpc1a10089.482ENSGAFG00000019750pabpc1a10089.482Gambusia_affinis
ENSSFOG00015006662pabpc1a10089.953ENSGACG00000003572pabpc1a10089.796Gasterosteus_aculeatus
ENSSFOG00015006662pabpc1a10087.558ENSGACG00000003771pabpc1b10087.714Gasterosteus_aculeatus
ENSSFOG00015006662pabpc1a5880.102ENSGGOG00000038606-9880.102Gorilla_gorilla
ENSSFOG00015006662pabpc1a5880.102ENSGGOG00000043933-9880.102Gorilla_gorilla
ENSSFOG00015006662pabpc1a10090.709ENSHBUG00000002075pabpc1b10090.709Haplochromis_burtoni
ENSSFOG00015006662pabpc1a9991.116ENSHBUG00000020487pabpc1a10091.116Haplochromis_burtoni
ENSSFOG00015006662pabpc1a5879.082ENSHGLG00000019668-9879.082Heterocephalus_glaber_female
ENSSFOG00015006662pabpc1a5879.082ENSHGLG00000019762-9879.082Heterocephalus_glaber_female
ENSSFOG00015006662pabpc1a5879.082ENSHGLG00100020854-9879.082Heterocephalus_glaber_male
ENSSFOG00015006662pabpc1a10090.110ENSHCOG00000013502pabpc1a10090.110Hippocampus_comes
ENSSFOG00015006662pabpc1a9875.854ENSHCOG00000003175pabpc1b9975.854Hippocampus_comes
ENSSFOG00015006662pabpc1a10084.567ENSIPUG00000010791-10084.567Ictalurus_punctatus
ENSSFOG00015006662pabpc1a10089.432ENSIPUG00000008848pabpc1a10089.432Ictalurus_punctatus
ENSSFOG00015006662pabpc1a7456.067ENSIPUG00000021244-6556.067Ictalurus_punctatus
ENSSFOG00015006662pabpc1a7559.701ENSIPUG00000018724-7859.701Ictalurus_punctatus
ENSSFOG00015006662pabpc1a5979.592ENSSTOG00000022096-9879.592Ictidomys_tridecemlineatus
ENSSFOG00015006662pabpc1a5979.592ENSSTOG00000026028-9879.592Ictidomys_tridecemlineatus
ENSSFOG00015006662pabpc1a5878.571ENSJJAG00000007037-9878.571Jaculus_jaculus
ENSSFOG00015006662pabpc1a10090.267ENSKMAG00000000605pabpc1a10090.110Kryptolebias_marmoratus
ENSSFOG00015006662pabpc1a10089.449ENSKMAG00000008049pabpc1b10089.764Kryptolebias_marmoratus
ENSSFOG00015006662pabpc1a10089.796ENSLBEG00000024002-10089.639Labrus_bergylta
ENSSFOG00015006662pabpc1a10089.921ENSLBEG00000026845pabpc1b10089.921Labrus_bergylta
ENSSFOG00015006662pabpc1a5978.974ENSLAFG00000023096-9878.974Loxodonta_africana
ENSSFOG00015006662pabpc1a5879.695ENSMFAG00000028878-9879.695Macaca_fascicularis
ENSSFOG00015006662pabpc1a5880.102ENSMMUG00000037681-9880.102Macaca_mulatta
ENSSFOG00015006662pabpc1a5880.102ENSMMUG00000039929-9880.102Macaca_mulatta
ENSSFOG00015006662pabpc1a5880.102ENSMMUG00000009740-9880.102Macaca_mulatta
ENSSFOG00015006662pabpc1a5880.102ENSMNEG00000037732-9880.102Macaca_nemestrina
ENSSFOG00015006662pabpc1a5880.102ENSMLEG00000027495-9880.102Mandrillus_leucophaeus
ENSSFOG00015006662pabpc1a10090.709ENSMAMG00000014610pabpc1b10090.709Mastacembelus_armatus
ENSSFOG00015006662pabpc1a9990.888ENSMAMG00000004502-10090.888Mastacembelus_armatus
ENSSFOG00015006662pabpc1a10090.709ENSMZEG00005026745pabpc1b10090.709Maylandia_zebra
ENSSFOG00015006662pabpc1a9991.116ENSMZEG00005025416pabpc1a10091.116Maylandia_zebra
ENSSFOG00015006662pabpc1a5880.102ENSMICG00000047642-9880.102Microcebus_murinus
ENSSFOG00015006662pabpc1a9989.977ENSMMOG00000018044pabpc1a10089.977Mola_mola
ENSSFOG00015006662pabpc1a10085.512ENSMMOG00000018009pabpc1b10085.039Mola_mola
ENSSFOG00015006662pabpc1a9966.825ENSMODG00000015024-9966.508Monodelphis_domestica
ENSSFOG00015006662pabpc1a9971.987ENSMODG00000013156-9972.484Monodelphis_domestica
ENSSFOG00015006662pabpc1a10082.835ENSMALG00000006066pabpc1b10085.039Monopterus_albus
ENSSFOG00015006662pabpc1a10089.796ENSMALG00000013020-10089.953Monopterus_albus
ENSSFOG00015006662pabpc1a5881.967ENSNGAG00000012688-9878.571Nannospalax_galili
ENSSFOG00015006662pabpc1a9991.116ENSNBRG00000003068-10091.116Neolamprologus_brichardi
ENSSFOG00015006662pabpc1a10091.024ENSNBRG00000013737pabpc1b10091.024Neolamprologus_brichardi
ENSSFOG00015006662pabpc1a5880.102ENSNLEG00000018128-9880.102Nomascus_leucogenys
ENSSFOG00015006662pabpc1a5879.592ENSODEG00000018540-9879.592Octodon_degus
ENSSFOG00015006662pabpc1a10090.551ENSONIG00000002717pabpc1b10090.551Oreochromis_niloticus
ENSSFOG00015006662pabpc1a10090.110ENSONIG00000006871-10089.953Oreochromis_niloticus
ENSSFOG00015006662pabpc1a5980.102ENSOCUG00000002565-9880.102Oryctolagus_cuniculus
ENSSFOG00015006662pabpc1a9994.286ENSORLG00000002691pabpc1a10094.286Oryzias_latipes
ENSSFOG00015006662pabpc1a10085.512ENSORLG00000003008-10084.882Oryzias_latipes
ENSSFOG00015006662pabpc1a10089.796ENSORLG00020022398pabpc1a10089.796Oryzias_latipes_hni
ENSSFOG00015006662pabpc1a10085.512ENSORLG00020022259-10084.882Oryzias_latipes_hni
ENSSFOG00015006662pabpc1a10085.827ENSORLG00015010932-10085.197Oryzias_latipes_hsok
ENSSFOG00015006662pabpc1a10089.639ENSORLG00015013633pabpc110089.639Oryzias_latipes_hsok
ENSSFOG00015006662pabpc1a10090.110ENSOMEG00000020219pabpc1a10090.110Oryzias_melastigma
ENSSFOG00015006662pabpc1a9982.380ENSOMEG00000013627pabpc1b10082.380Oryzias_melastigma
ENSSFOG00015006662pabpc1a5980.102ENSOGAG00000029513-9880.102Otolemur_garnettii
ENSSFOG00015006662pabpc1a5980.102ENSOGAG00000026047-9880.102Otolemur_garnettii
ENSSFOG00015006662pabpc1a5980.102ENSOARG00000005943-9880.102Ovis_aries
ENSSFOG00015006662pabpc1a5880.102ENSPPAG00000012920-9880.102Pan_paniscus
ENSSFOG00015006662pabpc1a5980.102ENSPPRG00000011809-9880.102Panthera_pardus
ENSSFOG00015006662pabpc1a5980.102ENSPPRG00000011804-9880.102Panthera_pardus
ENSSFOG00015006662pabpc1a5880.102ENSPTRG00000028252-9880.102Pan_troglodytes
ENSSFOG00015006662pabpc1a5880.102ENSPANG00000011549-9880.102Papio_anubis
ENSSFOG00015006662pabpc1a10091.181ENSPKIG00000005676pabpc1b10091.181Paramormyrops_kingsleyae
ENSSFOG00015006662pabpc1a7091.256ENSPMGG00000023134-9791.256Periophthalmus_magnuspinnatus
ENSSFOG00015006662pabpc1a7093.258ENSPMGG00000022487pabpc1a9293.258Periophthalmus_magnuspinnatus
ENSSFOG00015006662pabpc1a9970.541ENSPCIG00000016995-5570.175Phascolarctos_cinereus
ENSSFOG00015006662pabpc1a10090.709ENSPFOG00000005917pabpc1b10090.709Poecilia_formosa
ENSSFOG00015006662pabpc1a10088.290ENSPFOG00000010815pabpc1a10088.290Poecilia_formosa
ENSSFOG00015006662pabpc1a10089.953ENSPLAG00000004114pabpc1a10089.953Poecilia_latipinna
ENSSFOG00015006662pabpc1a10091.024ENSPLAG00000001388pabpc1b10091.024Poecilia_latipinna
ENSSFOG00015006662pabpc1a10090.709ENSPMEG00000014399pabpc1b10090.709Poecilia_mexicana
ENSSFOG00015006662pabpc1a10089.953ENSPMEG00000001334pabpc1a10089.953Poecilia_mexicana
ENSSFOG00015006662pabpc1a10091.024ENSPREG00000010911pabpc1b10091.024Poecilia_reticulata
ENSSFOG00015006662pabpc1a9990.661ENSPREG00000019595pabpc1a10090.661Poecilia_reticulata
ENSSFOG00015006662pabpc1a5980.102ENSPPYG00000020468-9880.102Pongo_abelii
ENSSFOG00015006662pabpc1a5980.102ENSPCAG00000005308-9880.102Procavia_capensis
ENSSFOG00015006662pabpc1a5879.592ENSPCOG00000026349-9879.592Propithecus_coquereli
ENSSFOG00015006662pabpc1a5980.513ENSPVAG00000016117-9880.513Pteropus_vampyrus
ENSSFOG00015006662pabpc1a10090.709ENSPNYG00000012578pabpc1b10090.709Pundamilia_nyererei
ENSSFOG00015006662pabpc1a10089.796ENSPNYG00000005192pabpc1a10089.639Pundamilia_nyererei
ENSSFOG00015006662pabpc1a10090.394ENSPNAG00000024626pabpc1b10090.236Pygocentrus_nattereri
ENSSFOG00015006662pabpc1a10091.811ENSPNAG00000028408pabpc1a10091.496Pygocentrus_nattereri
ENSSFOG00015006662pabpc1a9990.284ENSRBIG00000028738-9590.284Rhinopithecus_bieti
ENSSFOG00015006662pabpc1a5880.102ENSRBIG00000027173-9880.102Rhinopithecus_bieti
ENSSFOG00015006662pabpc1a5880.102ENSRROG00000017404-9880.102Rhinopithecus_roxellana
ENSSFOG00015006662pabpc1a9864.090ENSSHAG00000000511-10063.929Sarcophilus_harrisii
ENSSFOG00015006662pabpc1a10089.953ENSSMAG00000010803pabpc1a10089.639Scophthalmus_maximus
ENSSFOG00015006662pabpc1a10090.079ENSSMAG00000006869pabpc1b10090.079Scophthalmus_maximus
ENSSFOG00015006662pabpc1a10090.424ENSSDUG00000006675pabpc1a10090.110Seriola_dumerili
ENSSFOG00015006662pabpc1a10089.134ENSSDUG00000011965pabpc1b10089.134Seriola_dumerili
ENSSFOG00015006662pabpc1a10090.424ENSSLDG00000011661pabpc1a10090.110Seriola_lalandi_dorsalis
ENSSFOG00015006662pabpc1a10090.938ENSSLDG00000014156pabpc1b10090.938Seriola_lalandi_dorsalis
ENSSFOG00015006662pabpc1a10090.267ENSSPAG00000014453-10090.267Stegastes_partitus
ENSSFOG00015006662pabpc1a10091.181ENSSPAG00000019265pabpc1b10091.181Stegastes_partitus
ENSSFOG00015006662pabpc1a5880.102ENSSSCG00000032167-9880.102Sus_scrofa
ENSSFOG00015006662pabpc1a5880.102ENSSSCG00000036336-9880.102Sus_scrofa
ENSSFOG00015006662pabpc1a10088.697ENSTRUG00000011577-10088.697Takifugu_rubripes
ENSSFOG00015006662pabpc1a10087.736ENSTRUG00000003767-10087.421Takifugu_rubripes
ENSSFOG00015006662pabpc1a10087.637ENSTNIG00000009153pabpc1b10087.324Tetraodon_nigroviridis
ENSSFOG00015006662pabpc1a10085.913ENSTNIG00000013307pabpc1a10085.913Tetraodon_nigroviridis
ENSSFOG00015006662pabpc1a5980.102ENSTTRG00000013181-9880.102Tursiops_truncatus
ENSSFOG00015006662pabpc1a5880.102ENSUAMG00000008089-9880.102Ursus_americanus
ENSSFOG00015006662pabpc1a5880.102ENSUMAG00000003364-9880.102Ursus_maritimus
ENSSFOG00015006662pabpc1a9754.797ENSUMAG00000023926-8969.337Ursus_maritimus
ENSSFOG00015006662pabpc1a5979.000ENSVVUG00000015892-9779.000Vulpes_vulpes
ENSSFOG00015006662pabpc1a9943.722ENSXETG00000015439-10043.722Xenopus_tropicalis
ENSSFOG00015006662pabpc1a10086.299ENSXCOG00000019901pabpc1b10085.849Xiphophorus_couchianus
ENSSFOG00015006662pabpc1a10085.804ENSXCOG00000017066pabpc1a10085.804Xiphophorus_couchianus
ENSSFOG00015006662pabpc1a10089.796ENSXMAG00000002555pabpc1a10089.796Xiphophorus_maculatus
ENSSFOG00015006662pabpc1a10091.024ENSXMAG00000003753pabpc1b10091.024Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us