EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015006728 (Gene tree)
Gene ID: 108919845
Gene Symbol: lsm7
Alias: fj64g01|wu:fj64g01|zgc:66405
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 5555 bases
Position: chrKV411278.1:4391189-4396743
Accession: 108919845
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015010375	LSM	PF01423.22	7.3e-21	1	1
ENSSFOP00015010400	LSM	PF01423.22	1.1e-20	1	1
ENSSFOP00015010365	LSM	PF01423.22	1.3e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015010507	-	3769	-	ENSSFOP00015010365	146 (aa)	-	-
ENSSFOT00015010517	-	3287	XM_018728138	ENSSFOP00015010375	103 (aa)	XP_018583654	A0A1W4XVR9
ENSSFOT00015010541	-	369	-	ENSSFOP00015010400	122 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015006728's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03018	RNA degradation	KEGG
sfm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015006728's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015006728	lsm7	72	35.526	ENSSFOG00015004412	lsm8	73	35.526
ENSSFOG00015006728	lsm7	69	38.028	ENSSFOG00015019030	snrpg	83	38.028

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015006728	lsm7	100	95.146	ENSG00000130332	LSM7	100	95.146	Homo_sapiens
ENSSFOG00015006728	lsm7	91	95.745	ENSAPOG00000015573	lsm7	81	95.745	Acanthochromis_polyacanthus
ENSSFOG00015006728	lsm7	100	92.233	ENSAMEG00000005484	LSM7	100	92.233	Ailuropoda_melanoleuca
ENSSFOG00015006728	lsm7	95	94.898	ENSACIG00000006498	lsm7	78	94.898	Amphilophus_citrinellus
ENSSFOG00015006728	lsm7	99	95.098	ENSAOCG00000001077	lsm7	92	96.040	Amphiprion_ocellaris
ENSSFOG00015006728	lsm7	100	94.175	ENSAPEG00000024447	lsm7	92	96.040	Amphiprion_percula
ENSSFOG00015006728	lsm7	100	96.117	ENSAPEG00000000694	lsm7	100	96.117	Amphiprion_percula
ENSSFOG00015006728	lsm7	100	96.117	ENSATEG00000008557	lsm7	100	96.117	Anabas_testudineus
ENSSFOG00015006728	lsm7	100	87.379	ENSANAG00000022222	-	100	87.379	Aotus_nancymaae
ENSSFOG00015006728	lsm7	100	95.146	ENSANAG00000037196	-	100	95.146	Aotus_nancymaae
ENSSFOG00015006728	lsm7	100	95.146	ENSACLG00000021021	lsm7	100	95.146	Astatotilapia_calliptera
ENSSFOG00015006728	lsm7	100	96.117	ENSAMXG00000037622	lsm7	100	96.117	Astyanax_mexicanus
ENSSFOG00015006728	lsm7	100	95.146	ENSBTAG00000004521	LSM7	100	95.146	Bos_taurus
ENSSFOG00015006728	lsm7	97	59.000	WBGene00003081	lsm-7	96	59.000	Caenorhabditis_elegans
ENSSFOG00015006728	lsm7	54	94.643	ENSCJAG00000039713	-	68	94.643	Callithrix_jacchus
ENSSFOG00015006728	lsm7	98	94.059	ENSCAFG00000019409	LSM7	98	94.059	Canis_familiaris
ENSSFOG00015006728	lsm7	98	94.059	ENSCAFG00020018168	LSM7	74	95.000	Canis_lupus_dingo
ENSSFOG00015006728	lsm7	100	93.204	ENSCHIG00000023663	LSM7	100	93.204	Capra_hircus
ENSSFOG00015006728	lsm7	69	94.366	ENSCAPG00000014534	LSM7	100	94.366	Cavia_aperea
ENSSFOG00015006728	lsm7	100	95.146	ENSCPOG00000014025	LSM7	100	95.146	Cavia_porcellus
ENSSFOG00015006728	lsm7	98	95.050	ENSCCAG00000035456	LSM7	99	95.050	Cebus_capucinus
ENSSFOG00015006728	lsm7	100	95.146	ENSCATG00000023543	LSM7	100	95.146	Cercocebus_atys
ENSSFOG00015006728	lsm7	100	95.146	ENSCLAG00000011635	LSM7	100	95.146	Chinchilla_lanigera
ENSSFOG00015006728	lsm7	100	95.146	ENSCSAG00000011599	LSM7	100	95.146	Chlorocebus_sabaeus
ENSSFOG00015006728	lsm7	70	94.444	ENSCPBG00000021317	LSM7	79	93.243	Chrysemys_picta_bellii
ENSSFOG00015006728	lsm7	93	81.250	ENSCING00000022134	-	97	81.250	Ciona_intestinalis
ENSSFOG00015006728	lsm7	100	95.146	ENSCANG00000035525	LSM7	100	95.146	Colobus_angolensis_palliatus
ENSSFOG00015006728	lsm7	83	88.235	ENSCGRG00001016005	-	89	88.235	Cricetulus_griseus_chok1gshd
ENSSFOG00015006728	lsm7	100	94.175	ENSCGRG00001000807	-	100	94.175	Cricetulus_griseus_chok1gshd
ENSSFOG00015006728	lsm7	98	94.059	ENSCGRG00000014355	-	97	94.059	Cricetulus_griseus_crigri
ENSSFOG00015006728	lsm7	83	88.235	ENSCGRG00000006821	-	89	88.235	Cricetulus_griseus_crigri
ENSSFOG00015006728	lsm7	98	96.040	ENSCSEG00000014900	lsm7	86	96.040	Cynoglossus_semilaevis
ENSSFOG00015006728	lsm7	98	97.030	ENSCVAG00000021091	lsm7	94	97.030	Cyprinodon_variegatus
ENSSFOG00015006728	lsm7	100	96.117	ENSDARG00000058328	lsm7	100	96.117	Danio_rerio
ENSSFOG00015006728	lsm7	99	93.137	ENSDORG00000024460	Lsm7	100	93.137	Dipodomys_ordii
ENSSFOG00015006728	lsm7	94	76.531	FBgn0261068	LSm7	89	76.531	Drosophila_melanogaster
ENSSFOG00015006728	lsm7	98	92.079	ENSETEG00000012788	LSM7	99	92.079	Echinops_telfairi
ENSSFOG00015006728	lsm7	100	85.437	ENSEBUG00000016992	lsm7	99	85.437	Eptatretus_burgeri
ENSSFOG00015006728	lsm7	81	59.036	ENSEBUG00000010470	-	80	58.333	Eptatretus_burgeri
ENSSFOG00015006728	lsm7	100	92.233	ENSECAG00000001440	LSM7	66	92.233	Equus_caballus
ENSSFOG00015006728	lsm7	100	94.175	ENSFCAG00000003445	LSM7	100	94.175	Felis_catus
ENSSFOG00015006728	lsm7	98	96.040	ENSFALG00000011912	LSM7	100	96.040	Ficedula_albicollis
ENSSFOG00015006728	lsm7	93	94.792	ENSFDAG00000007661	LSM7	100	94.792	Fukomys_damarensis
ENSSFOG00015006728	lsm7	98	97.030	ENSFHEG00000006349	lsm7	90	97.030	Fundulus_heteroclitus
ENSSFOG00015006728	lsm7	100	94.175	ENSGMOG00000013320	lsm7	100	94.175	Gadus_morhua
ENSSFOG00015006728	lsm7	100	97.087	ENSGAFG00000013902	lsm7	100	97.087	Gambusia_affinis
ENSSFOG00015006728	lsm7	100	93.204	ENSGACG00000010390	lsm7	100	93.204	Gasterosteus_aculeatus
ENSSFOG00015006728	lsm7	100	95.146	ENSGGOG00000010172	LSM7	100	95.146	Gorilla_gorilla
ENSSFOG00015006728	lsm7	100	95.146	ENSHBUG00000004616	lsm7	100	95.146	Haplochromis_burtoni
ENSSFOG00015006728	lsm7	100	95.146	ENSHGLG00000010587	LSM7	100	95.146	Heterocephalus_glaber_female
ENSSFOG00015006728	lsm7	100	95.146	ENSHGLG00100000852	LSM7	100	95.146	Heterocephalus_glaber_male
ENSSFOG00015006728	lsm7	98	95.050	ENSHCOG00000020252	lsm7	100	95.050	Hippocampus_comes
ENSSFOG00015006728	lsm7	100	96.117	ENSIPUG00000024724	lsm7	100	96.117	Ictalurus_punctatus
ENSSFOG00015006728	lsm7	98	95.050	ENSSTOG00000028372	LSM7	99	95.050	Ictidomys_tridecemlineatus
ENSSFOG00015006728	lsm7	97	95.000	ENSJJAG00000001936	Lsm7	97	95.000	Jaculus_jaculus
ENSSFOG00015006728	lsm7	100	97.087	ENSKMAG00000022151	lsm7	100	97.087	Kryptolebias_marmoratus
ENSSFOG00015006728	lsm7	100	95.146	ENSLBEG00000005203	lsm7	100	95.146	Labrus_bergylta
ENSSFOG00015006728	lsm7	90	95.699	ENSLACG00000015700	LSM7	100	94.175	Latimeria_chalumnae
ENSSFOG00015006728	lsm7	98	97.030	ENSLOCG00000004356	lsm7	98	97.030	Lepisosteus_oculatus
ENSSFOG00015006728	lsm7	98	95.050	ENSLAFG00000029302	LSM7	98	95.050	Loxodonta_africana
ENSSFOG00015006728	lsm7	100	95.146	ENSMFAG00000044572	LSM7	100	95.146	Macaca_fascicularis
ENSSFOG00015006728	lsm7	100	95.146	ENSMMUG00000000452	LSM7	100	95.146	Macaca_mulatta
ENSSFOG00015006728	lsm7	100	95.146	ENSMNEG00000004393	LSM7	100	95.146	Macaca_nemestrina
ENSSFOG00015006728	lsm7	100	95.146	ENSMLEG00000030852	LSM7	100	95.146	Mandrillus_leucophaeus
ENSSFOG00015006728	lsm7	100	95.146	ENSMAMG00000005410	lsm7	100	95.146	Mastacembelus_armatus
ENSSFOG00015006728	lsm7	100	95.146	ENSMZEG00005028055	lsm7	100	95.146	Maylandia_zebra
ENSSFOG00015006728	lsm7	100	97.087	ENSMGAG00000000750	LSM7	89	97.087	Meleagris_gallopavo
ENSSFOG00015006728	lsm7	100	94.175	ENSMAUG00000009276	Lsm7	100	94.175	Mesocricetus_auratus
ENSSFOG00015006728	lsm7	100	95.146	ENSMICG00000028619	-	100	95.146	Microcebus_murinus
ENSSFOG00015006728	lsm7	100	94.175	ENSMICG00000009988	-	100	94.175	Microcebus_murinus
ENSSFOG00015006728	lsm7	100	94.175	ENSMOCG00000016925	Lsm7	100	94.175	Microtus_ochrogaster
ENSSFOG00015006728	lsm7	100	96.117	ENSMMOG00000019645	lsm7	98	96.117	Mola_mola
ENSSFOG00015006728	lsm7	100	96.117	ENSMODG00000004722	LSM7	100	96.117	Monodelphis_domestica
ENSSFOG00015006728	lsm7	100	95.146	ENSMALG00000014511	lsm7	79	95.146	Monopterus_albus
ENSSFOG00015006728	lsm7	99	94.118	MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	Mus_caroli
ENSSFOG00015006728	lsm7	99	94.118	ENSMUSG00000035215	Lsm7	99	94.118	Mus_musculus
ENSSFOG00015006728	lsm7	99	94.118	MGP_PahariEiJ_G0031020	Lsm7	99	94.118	Mus_pahari
ENSSFOG00015006728	lsm7	99	94.118	MGP_SPRETEiJ_G0016425	Lsm7	99	94.118	Mus_spretus
ENSSFOG00015006728	lsm7	100	92.233	ENSMLUG00000013097	-	100	92.233	Myotis_lucifugus
ENSSFOG00015006728	lsm7	99	90.196	ENSMLUG00000024002	-	94	90.196	Myotis_lucifugus
ENSSFOG00015006728	lsm7	100	93.204	ENSNGAG00000021637	Lsm7	100	93.204	Nannospalax_galili
ENSSFOG00015006728	lsm7	98	95.050	ENSNBRG00000015770	lsm7	87	95.050	Neolamprologus_brichardi
ENSSFOG00015006728	lsm7	91	95.745	ENSNBRG00000001237	-	82	93.204	Neolamprologus_brichardi
ENSSFOG00015006728	lsm7	100	95.146	ENSNLEG00000002265	LSM7	100	95.146	Nomascus_leucogenys
ENSSFOG00015006728	lsm7	100	88.350	ENSODEG00000018769	-	100	88.350	Octodon_degus
ENSSFOG00015006728	lsm7	100	95.146	ENSODEG00000013590	-	100	95.146	Octodon_degus
ENSSFOG00015006728	lsm7	100	74.757	ENSODEG00000008190	-	100	74.757	Octodon_degus
ENSSFOG00015006728	lsm7	100	95.146	ENSONIG00000001801	lsm7	89	95.146	Oreochromis_niloticus
ENSSFOG00015006728	lsm7	100	96.117	ENSORLG00000023951	lsm7	100	96.117	Oryzias_latipes
ENSSFOG00015006728	lsm7	100	96.117	ENSORLG00020022226	lsm7	100	96.117	Oryzias_latipes_hni
ENSSFOG00015006728	lsm7	100	94.175	ENSORLG00015020044	lsm7	94	96.040	Oryzias_latipes_hsok
ENSSFOG00015006728	lsm7	100	96.117	ENSOMEG00000012806	lsm7	100	96.117	Oryzias_melastigma
ENSSFOG00015006728	lsm7	98	93.069	ENSOGAG00000000144	-	99	93.069	Otolemur_garnettii
ENSSFOG00015006728	lsm7	100	84.466	ENSOGAG00000024373	-	100	84.466	Otolemur_garnettii
ENSSFOG00015006728	lsm7	100	93.204	ENSOARG00000014013	LSM7	100	93.204	Ovis_aries
ENSSFOG00015006728	lsm7	100	95.146	ENSPPAG00000026500	LSM7	100	95.146	Pan_paniscus
ENSSFOG00015006728	lsm7	100	94.175	ENSPPRG00000008624	LSM7	100	94.175	Panthera_pardus
ENSSFOG00015006728	lsm7	98	94.059	ENSPTIG00000016252	LSM7	98	94.059	Panthera_tigris_altaica
ENSSFOG00015006728	lsm7	100	95.146	ENSPTRG00000010233	LSM7	100	95.146	Pan_troglodytes
ENSSFOG00015006728	lsm7	100	95.146	ENSPANG00000020668	LSM7	100	95.146	Papio_anubis
ENSSFOG00015006728	lsm7	100	98.058	ENSPKIG00000011325	lsm7	100	98.058	Paramormyrops_kingsleyae
ENSSFOG00015006728	lsm7	98	97.030	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSSFOG00015006728	lsm7	100	96.117	ENSPMGG00000006498	lsm7	100	96.117	Periophthalmus_magnuspinnatus
ENSSFOG00015006728	lsm7	100	96.117	ENSPCIG00000030454	LSM7	100	96.117	Phascolarctos_cinereus
ENSSFOG00015006728	lsm7	100	94.175	ENSPFOG00000012467	lsm7	91	94.175	Poecilia_formosa
ENSSFOG00015006728	lsm7	100	94.175	ENSPLAG00000000252	lsm7	94	95.098	Poecilia_latipinna
ENSSFOG00015006728	lsm7	100	94.175	ENSPMEG00000000587	lsm7	94	95.098	Poecilia_mexicana
ENSSFOG00015006728	lsm7	78	77.778	ENSPREG00000016718	lsm7	65	77.778	Poecilia_reticulata
ENSSFOG00015006728	lsm7	71	93.151	ENSPPYG00000009348	-	50	93.151	Pongo_abelii
ENSSFOG00015006728	lsm7	100	95.146	ENSPCOG00000017177	LSM7	100	95.146	Propithecus_coquereli
ENSSFOG00015006728	lsm7	100	95.146	ENSPNYG00000006938	lsm7	100	95.146	Pundamilia_nyererei
ENSSFOG00015006728	lsm7	100	96.117	ENSPNAG00000010141	lsm7	100	96.117	Pygocentrus_nattereri
ENSSFOG00015006728	lsm7	99	95.098	ENSRNOG00000019552	Lsm7	99	95.098	Rattus_norvegicus
ENSSFOG00015006728	lsm7	100	95.146	ENSRBIG00000035978	LSM7	100	95.146	Rhinopithecus_bieti
ENSSFOG00015006728	lsm7	100	95.146	ENSRROG00000034044	LSM7	100	95.146	Rhinopithecus_roxellana
ENSSFOG00015006728	lsm7	80	49.412	YNL147W	-	74	49.412	Saccharomyces_cerevisiae
ENSSFOG00015006728	lsm7	100	95.146	ENSSBOG00000034899	LSM7	100	95.146	Saimiri_boliviensis_boliviensis
ENSSFOG00015006728	lsm7	100	94.175	ENSSMAG00000004195	lsm7	93	96.040	Scophthalmus_maximus
ENSSFOG00015006728	lsm7	100	96.117	ENSSDUG00000001863	lsm7	100	96.117	Seriola_dumerili
ENSSFOG00015006728	lsm7	100	96.117	ENSSLDG00000016339	lsm7	100	96.117	Seriola_lalandi_dorsalis
ENSSFOG00015006728	lsm7	100	96.117	ENSSPAG00000015221	lsm7	100	96.117	Stegastes_partitus
ENSSFOG00015006728	lsm7	98	95.050	ENSSSCG00000013463	LSM7	99	95.050	Sus_scrofa
ENSSFOG00015006728	lsm7	98	96.040	ENSTGUG00000000067	LSM7	100	96.040	Taeniopygia_guttata
ENSSFOG00015006728	lsm7	100	96.117	ENSTRUG00000022913	lsm7	100	96.117	Takifugu_rubripes
ENSSFOG00015006728	lsm7	100	96.117	ENSTNIG00000015525	lsm7	100	96.117	Tetraodon_nigroviridis
ENSSFOG00015006728	lsm7	68	81.429	ENSTBEG00000016602	LSM7	100	81.429	Tupaia_belangeri
ENSSFOG00015006728	lsm7	100	92.233	ENSUAMG00000000912	LSM7	86	92.233	Ursus_americanus
ENSSFOG00015006728	lsm7	98	94.059	ENSUMAG00000006556	LSM7	78	95.000	Ursus_maritimus
ENSSFOG00015006728	lsm7	69	92.958	ENSVVUG00000002640	LSM7	66	93.056	Vulpes_vulpes
ENSSFOG00015006728	lsm7	98	94.059	ENSXETG00000022166	lsm7	100	94.059	Xenopus_tropicalis
ENSSFOG00015006728	lsm7	99	96.078	ENSXCOG00000002572	lsm7	100	96.078	Xiphophorus_couchianus
ENSSFOG00015006728	lsm7	100	97.087	ENSXMAG00000018630	lsm7	100	97.087	Xiphophorus_maculatus