EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015007118 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: poly(rC)-binding protein 3-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 10953 bases
Position: chrKV410828.1:93792-104744
Accession: 108923695
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015011011	KH_1	PF00013.29	2.4e-50	1	3
ENSSFOP00015011011	KH_1	PF00013.29	2.4e-50	2	3
ENSSFOP00015011011	KH_1	PF00013.29	2.4e-50	3	3
ENSSFOP00015011011	KH_2	PF07650.17	2.9e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015011159	-	975	XM_018734625	ENSSFOP00015011011	324 (aa)	XP_018590141	-

Gene Model

Click here to download ENSSFOG00015007118's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015007118's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015007118	-	85	43.284	ENSSFOG00015004204	nova2	51	43.284
ENSSFOG00015007118	-	64	38.571	ENSSFOG00015018719	khsrp	60	38.571
ENSSFOG00015007118	-	75	52.459	ENSSFOG00015023730	hnrpkl	58	52.459
ENSSFOG00015007118	-	93	86.047	ENSSFOG00015010205	pcbp3	98	80.247
ENSSFOG00015007118	-	94	75.490	ENSSFOG00015017796	PCBP2	99	75.163
ENSSFOG00015007118	-	92	31.667	ENSSFOG00015002540	igf2bp1	56	31.667
ENSSFOG00015007118	-	51	32.530	ENSSFOG00015007770	igf2bp2b	71	34.177
ENSSFOG00015007118	-	93	79.321	ENSSFOG00015014706	pcbp3	93	79.321
ENSSFOG00015007118	-	64	39.437	ENSSFOG00015010767	KHSRP	52	39.437
ENSSFOG00015007118	-	85	30.435	ENSSFOG00015010909	-	71	38.158
ENSSFOG00015007118	-	78	52.459	ENSSFOG00015009351	hnrnpk	63	52.459
ENSSFOG00015007118	-	92	58.896	ENSSFOG00015012075	PCBP4	73	58.896
ENSSFOG00015007118	-	94	76.393	ENSSFOG00015013231	PCBP2	96	74.760

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015007118	-	93	84.768	ENSAPOG00000020003	pcbp3	84	84.768	Acanthochromis_polyacanthus
ENSSFOG00015007118	-	93	85.430	ENSAPOG00000016582	-	98	82.650	Acanthochromis_polyacanthus
ENSSFOG00015007118	-	97	78.932	ENSAMEG00000001697	-	99	75.783	Ailuropoda_melanoleuca
ENSSFOG00015007118	-	93	78.704	ENSACIG00000010933	pcbp3	97	77.273	Amphilophus_citrinellus
ENSSFOG00015007118	-	95	81.818	ENSACIG00000002739	-	98	81.818	Amphilophus_citrinellus
ENSSFOG00015007118	-	86	81.507	ENSAOCG00000007806	-	100	81.507	Amphiprion_ocellaris
ENSSFOG00015007118	-	93	84.818	ENSAOCG00000008592	-	96	84.818	Amphiprion_ocellaris
ENSSFOG00015007118	-	95	83.974	ENSAPEG00000005209	-	97	83.974	Amphiprion_percula
ENSSFOG00015007118	-	93	78.287	ENSAPEG00000008011	pcbp3	93	78.287	Amphiprion_percula
ENSSFOG00015007118	-	95	83.974	ENSATEG00000009833	-	97	83.974	Anabas_testudineus
ENSSFOG00015007118	-	93	78.704	ENSATEG00000015787	-	98	78.704	Anabas_testudineus
ENSSFOG00015007118	-	97	80.422	ENSAPLG00000002975	-	99	80.422	Anas_platyrhynchos
ENSSFOG00015007118	-	95	77.374	ENSAPLG00000008951	-	80	77.374	Anas_platyrhynchos
ENSSFOG00015007118	-	98	81.977	ENSACAG00000009819	-	100	81.977	Anolis_carolinensis
ENSSFOG00015007118	-	97	73.961	ENSACAG00000004607	-	99	73.961	Anolis_carolinensis
ENSSFOG00015007118	-	73	84.454	ENSANAG00000030702	-	100	84.454	Aotus_nancymaae
ENSSFOG00015007118	-	93	77.982	ENSACLG00000011835	pcbp3	93	77.982	Astatotilapia_calliptera
ENSSFOG00015007118	-	95	83.654	ENSACLG00000003801	-	97	83.654	Astatotilapia_calliptera
ENSSFOG00015007118	-	93	79.385	ENSAMXG00000003440	pcbp3	93	79.385	Astyanax_mexicanus
ENSSFOG00015007118	-	95	68.955	ENSAMXG00000001760	zgc:110045	74	68.955	Astyanax_mexicanus
ENSSFOG00015007118	-	93	85.000	ENSAMXG00000013588	-	97	85.000	Astyanax_mexicanus
ENSSFOG00015007118	-	88	84.549	ENSCAFG00020019472	-	83	84.549	Canis_lupus_dingo
ENSSFOG00015007118	-	94	85.016	ENSCSAG00000007440	-	87	85.016	Chlorocebus_sabaeus
ENSSFOG00015007118	-	94	85.342	ENSCPBG00000012151	-	99	78.994	Chrysemys_picta_bellii
ENSSFOG00015007118	-	95	83.434	ENSCPBG00000000733	-	74	83.434	Chrysemys_picta_bellii
ENSSFOG00015007118	-	95	71.302	ENSCSEG00000016984	-	98	71.302	Cynoglossus_semilaevis
ENSSFOG00015007118	-	93	84.437	ENSCSEG00000000822	pcbp3	97	84.437	Cynoglossus_semilaevis
ENSSFOG00015007118	-	93	78.528	ENSCVAG00000014482	pcbp3	93	78.528	Cyprinodon_variegatus
ENSSFOG00015007118	-	95	83.974	ENSCVAG00000005262	-	97	83.974	Cyprinodon_variegatus
ENSSFOG00015007118	-	93	79.692	ENSDARG00000054378	pcbp3	94	79.692	Danio_rerio
ENSSFOG00015007118	-	97	73.585	ENSETEG00000015988	-	99	73.585	Echinops_telfairi
ENSSFOG00015007118	-	82	72.388	ENSEBUG00000016192	pcbp3	99	72.388	Eptatretus_burgeri
ENSSFOG00015007118	-	93	78.689	ENSEBUG00000007485	-	92	77.169	Eptatretus_burgeri
ENSSFOG00015007118	-	68	69.507	ENSEBUG00000005495	pcbp3	67	69.507	Eptatretus_burgeri
ENSSFOG00015007118	-	93	85.430	ENSELUG00000001560	-	96	74.927	Esox_lucius
ENSSFOG00015007118	-	93	81.908	ENSELUG00000003521	pcbp3	94	81.908	Esox_lucius
ENSSFOG00015007118	-	95	76.816	ENSFALG00000004411	-	76	76.816	Ficedula_albicollis
ENSSFOG00015007118	-	97	83.912	ENSFALG00000003949	-	99	83.912	Ficedula_albicollis
ENSSFOG00015007118	-	95	84.295	ENSFHEG00000006539	-	97	84.295	Fundulus_heteroclitus
ENSSFOG00015007118	-	93	85.000	ENSFHEG00000016615	pcbp3	92	85.000	Fundulus_heteroclitus
ENSSFOG00015007118	-	92	72.000	ENSGMOG00000011992	pcbp3	94	72.000	Gadus_morhua
ENSSFOG00015007118	-	93	62.577	ENSGMOG00000008611	-	98	62.577	Gadus_morhua
ENSSFOG00015007118	-	97	74.930	ENSGALG00000004394	-	98	84.239	Gallus_gallus
ENSSFOG00015007118	-	95	82.883	ENSGALG00000013155	-	98	83.951	Gallus_gallus
ENSSFOG00015007118	-	93	85.099	ENSGAFG00000010274	-	92	85.099	Gambusia_affinis
ENSSFOG00015007118	-	93	76.923	ENSGAFG00000011430	pcbp3	94	76.923	Gambusia_affinis
ENSSFOG00015007118	-	93	70.640	ENSGACG00000014955	-	95	70.640	Gasterosteus_aculeatus
ENSSFOG00015007118	-	93	80.124	ENSGACG00000002266	-	94	80.124	Gasterosteus_aculeatus
ENSSFOG00015007118	-	84	73.874	ENSGAGG00000006956	-	87	73.874	Gopherus_agassizii
ENSSFOG00015007118	-	82	92.857	ENSGAGG00000000271	-	100	92.857	Gopherus_agassizii
ENSSFOG00015007118	-	93	84.768	ENSHBUG00000010697	pcbp3	96	84.768	Haplochromis_burtoni
ENSSFOG00015007118	-	95	83.654	ENSHBUG00000021782	-	97	83.654	Haplochromis_burtoni
ENSSFOG00015007118	-	93	82.060	ENSHCOG00000006067	-	94	82.060	Hippocampus_comes
ENSSFOG00015007118	-	93	78.769	ENSHCOG00000017868	pcbp3	93	78.769	Hippocampus_comes
ENSSFOG00015007118	-	95	83.974	ENSIPUG00000006238	pcbp3	97	83.974	Ictalurus_punctatus
ENSSFOG00015007118	-	93	78.287	ENSKMAG00000003046	pcbp3	93	78.287	Kryptolebias_marmoratus
ENSSFOG00015007118	-	92	85.050	ENSKMAG00000018530	-	92	85.050	Kryptolebias_marmoratus
ENSSFOG00015007118	-	93	84.053	ENSLBEG00000006201	pcbp3	93	84.053	Labrus_bergylta
ENSSFOG00015007118	-	93	74.183	ENSLBEG00000006542	-	97	71.692	Labrus_bergylta
ENSSFOG00015007118	-	94	74.148	ENSLACG00000010386	pcbp3	74	74.148	Latimeria_chalumnae
ENSSFOG00015007118	-	95	78.310	ENSLACG00000010804	zgc:110045	75	78.310	Latimeria_chalumnae
ENSSFOG00015007118	-	94	85.410	ENSLOCG00000005058	zgc:110045	82	84.731	Lepisosteus_oculatus
ENSSFOG00015007118	-	97	78.402	ENSLOCG00000009369	pcbp3	99	78.402	Lepisosteus_oculatus
ENSSFOG00015007118	-	95	83.974	ENSMAMG00000011620	-	97	83.974	Mastacembelus_armatus
ENSSFOG00015007118	-	94	83.987	ENSMAMG00000022336	pcbp3	92	83.987	Mastacembelus_armatus
ENSSFOG00015007118	-	93	79.808	ENSMZEG00005014882	-	98	74.194	Maylandia_zebra
ENSSFOG00015007118	-	94	77.576	ENSMZEG00005008993	pcbp3	97	77.576	Maylandia_zebra
ENSSFOG00015007118	-	95	76.536	ENSMGAG00000006794	-	76	76.536	Meleagris_gallopavo
ENSSFOG00015007118	-	94	71.920	ENSMGAG00000001883	-	96	72.206	Meleagris_gallopavo
ENSSFOG00015007118	-	96	81.587	ENSMMOG00000000730	pcbp3	89	81.587	Mola_mola
ENSSFOG00015007118	-	93	84.718	ENSMMOG00000005216	-	94	84.718	Mola_mola
ENSSFOG00015007118	-	67	68.056	ENSMODG00000027884	-	94	68.056	Monodelphis_domestica
ENSSFOG00015007118	-	93	78.738	ENSMALG00000000691	pcbp3	96	78.738	Monopterus_albus
ENSSFOG00015007118	-	97	75.595	ENSMPUG00000001779	-	91	75.595	Mustela_putorius_furo
ENSSFOG00015007118	-	93	79.808	ENSNBRG00000016714	-	98	77.134	Neolamprologus_brichardi
ENSSFOG00015007118	-	93	78.638	ENSNBRG00000016409	-	93	78.638	Neolamprologus_brichardi
ENSSFOG00015007118	-	94	74.640	ENSOPRG00000003431	-	99	74.640	Ochotona_princeps
ENSSFOG00015007118	-	94	73.851	ENSONIG00000012122	-	96	73.851	Oreochromis_niloticus
ENSSFOG00015007118	-	93	85.430	ENSONIG00000004611	-	94	85.430	Oreochromis_niloticus
ENSSFOG00015007118	-	97	83.912	ENSOCUG00000002696	-	91	83.912	Oryctolagus_cuniculus
ENSSFOG00015007118	-	93	85.430	ENSORLG00000022739	-	94	85.430	Oryzias_latipes
ENSSFOG00015007118	-	93	84.768	ENSORLG00000000059	pcbp3	97	84.768	Oryzias_latipes
ENSSFOG00015007118	-	95	83.333	ENSORLG00020006124	-	97	83.333	Oryzias_latipes_hni
ENSSFOG00015007118	-	94	83.987	ENSORLG00020012671	pcbp3	96	83.987	Oryzias_latipes_hni
ENSSFOG00015007118	-	93	85.430	ENSORLG00015008051	-	92	85.430	Oryzias_latipes_hsok
ENSSFOG00015007118	-	94	83.987	ENSORLG00015000429	pcbp3	96	83.987	Oryzias_latipes_hsok
ENSSFOG00015007118	-	86	85.409	ENSOMEG00000020811	pcbp3	97	85.409	Oryzias_melastigma
ENSSFOG00015007118	-	95	83.706	ENSOMEG00000020162	-	98	83.706	Oryzias_melastigma
ENSSFOG00015007118	-	97	73.278	ENSOGAG00000008044	-	99	73.278	Otolemur_garnettii
ENSSFOG00015007118	-	81	86.667	ENSPKIG00000020913	-	91	86.667	Paramormyrops_kingsleyae
ENSSFOG00015007118	-	93	86.379	ENSPKIG00000019329	pcbp3	94	86.047	Paramormyrops_kingsleyae
ENSSFOG00015007118	-	97	71.343	ENSPSIG00000014970	-	99	71.940	Pelodiscus_sinensis
ENSSFOG00015007118	-	68	83.128	ENSPSIG00000008350	-	67	83.128	Pelodiscus_sinensis
ENSSFOG00015007118	-	92	78.395	ENSPMGG00000022383	pcbp3	93	78.395	Periophthalmus_magnuspinnatus
ENSSFOG00015007118	-	94	69.032	ENSPMAG00000004551	pcbp3	89	69.032	Petromyzon_marinus
ENSSFOG00015007118	-	75	85.417	ENSPMAG00000004637	-	99	85.417	Petromyzon_marinus
ENSSFOG00015007118	-	97	78.006	ENSPCIG00000028092	-	98	81.448	Phascolarctos_cinereus
ENSSFOG00015007118	-	95	80.556	ENSPLAG00000004074	-	91	80.556	Poecilia_latipinna
ENSSFOG00015007118	-	93	73.099	ENSPLAG00000011449	pcbp3	86	73.099	Poecilia_latipinna
ENSSFOG00015007118	-	93	76.687	ENSPMEG00000021239	pcbp3	93	77.439	Poecilia_mexicana
ENSSFOG00015007118	-	93	79.936	ENSPMEG00000006653	-	98	77.679	Poecilia_mexicana
ENSSFOG00015007118	-	93	82.566	ENSPREG00000015736	pcbp3	97	82.566	Poecilia_reticulata
ENSSFOG00015007118	-	95	83.654	ENSPREG00000020585	-	97	83.654	Poecilia_reticulata
ENSSFOG00015007118	-	95	83.654	ENSPNYG00000013205	-	97	83.654	Pundamilia_nyererei
ENSSFOG00015007118	-	93	84.488	ENSPNYG00000012326	pcbp3	93	84.488	Pundamilia_nyererei
ENSSFOG00015007118	-	92	84.950	ENSPNAG00000008541	-	95	84.950	Pygocentrus_nattereri
ENSSFOG00015007118	-	93	85.430	ENSPNAG00000015104	pcbp3	94	85.430	Pygocentrus_nattereri
ENSSFOG00015007118	-	97	83.648	ENSRNOG00000001245	Pcbp3	99	83.648	Rattus_norvegicus
ENSSFOG00015007118	-	94	77.116	ENSRBIG00000028177	-	99	67.204	Rhinopithecus_bieti
ENSSFOG00015007118	-	97	78.932	ENSSHAG00000007890	-	99	78.932	Sarcophilus_harrisii
ENSSFOG00015007118	-	93	85.382	ENSSMAG00000003135	-	94	85.382	Scophthalmus_maximus
ENSSFOG00015007118	-	94	84.262	ENSSMAG00000011929	pcbp3	96	84.262	Scophthalmus_maximus
ENSSFOG00015007118	-	93	82.623	ENSSDUG00000008502	-	98	78.317	Seriola_dumerili
ENSSFOG00015007118	-	93	78.528	ENSSDUG00000011608	pcbp3	97	78.528	Seriola_dumerili
ENSSFOG00015007118	-	93	85.430	ENSSLDG00000020161	-	92	85.430	Seriola_lalandi_dorsalis
ENSSFOG00015007118	-	93	78.528	ENSSLDG00000008518	pcbp3	97	78.528	Seriola_lalandi_dorsalis
ENSSFOG00015007118	-	95	77.904	ENSSPUG00000013214	-	94	85.577	Sphenodon_punctatus
ENSSFOG00015007118	-	93	68.210	ENSSPAG00000023341	-	92	68.210	Stegastes_partitus
ENSSFOG00015007118	-	86	81.507	ENSSPAG00000004190	-	100	81.507	Stegastes_partitus
ENSSFOG00015007118	-	97	75.000	ENSTGUG00000003316	-	99	75.000	Taeniopygia_guttata
ENSSFOG00015007118	-	97	88.050	ENSTGUG00000008158	-	100	88.050	Taeniopygia_guttata
ENSSFOG00015007118	-	95	80.386	ENSTRUG00000006280	-	97	80.386	Takifugu_rubripes
ENSSFOG00015007118	-	93	81.935	ENSTRUG00000013604	pcbp3	93	81.935	Takifugu_rubripes
ENSSFOG00015007118	-	97	73.611	ENSTTRG00000015075	-	99	73.611	Tursiops_truncatus
ENSSFOG00015007118	-	88	76.786	ENSXETG00000010491	pcbp2	74	76.786	Xenopus_tropicalis
ENSSFOG00015007118	-	97	78.994	ENSXETG00000011483	pcbp1	99	78.994	Xenopus_tropicalis
ENSSFOG00015007118	-	92	77.439	ENSXCOG00000020481	pcbp3	93	77.439	Xiphophorus_couchianus
ENSSFOG00015007118	-	93	78.287	ENSXMAG00000008175	pcbp3	93	78.287	Xiphophorus_maculatus
ENSSFOG00015007118	-	93	85.430	ENSXMAG00000028711	-	92	85.430	Xiphophorus_maculatus