EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015007161 (Gene tree)
Gene ID: -
Gene Symbol: chd1
Alias: fc26h11|fk85d05|si:dkey-106m21.4|wu:fc26h11|wu:fk85d05|zgc:173506
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 14632 bases
Position: chrKV410906.1:1769251-1783882
Accession: 108929947
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015011160	ResIII	PF04851.15	8.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015011309	-	3993	XM_018744885	ENSSFOP00015011160	1330 (aa)	XP_018600401	-

Gene Model

Click here to download ENSSFOG00015007161's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015007161's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015007161	chd1	88	64.573	ENSSFOG00015023759	chd2	62	67.637

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015007161	chd1	90	82.439	ENSG00000153922	CHD1	71	81.766	Homo_sapiens
ENSSFOG00015007161	chd1	83	87.975	ENSAPOG00000005764	chd1	96	87.379	Acanthochromis_polyacanthus
ENSSFOG00015007161	chd1	94	83.007	ENSAOCG00000023105	chd1	79	82.835	Amphiprion_ocellaris
ENSSFOG00015007161	chd1	94	84.351	ENSAPEG00000013544	chd1	79	84.186	Amphiprion_percula
ENSSFOG00015007161	chd1	90	85.621	ENSATEG00000010676	chd1	76	83.933	Anabas_testudineus
ENSSFOG00015007161	chd1	94	84.585	ENSAMXG00000010843	chd1	95	84.603	Astyanax_mexicanus
ENSSFOG00015007161	chd1	90	82.602	ENSCATG00000032035	CHD1	72	81.930	Cercocebus_atys
ENSSFOG00015007161	chd1	90	82.602	ENSCSAG00000015339	CHD1	71	81.930	Chlorocebus_sabaeus
ENSSFOG00015007161	chd1	68	75.080	ENSCPBG00000015831	CHD1	94	75.345	Chrysemys_picta_bellii
ENSSFOG00015007161	chd1	90	79.708	ENSCANG00000036916	CHD1	72	79.068	Colobus_angolensis_palliatus
ENSSFOG00015007161	chd1	90	81.789	ENSCGRG00001023943	Chd1	72	82.041	Cricetulus_griseus_chok1gshd
ENSSFOG00015007161	chd1	90	81.789	ENSCGRG00000008652	Chd1	72	82.041	Cricetulus_griseus_crigri
ENSSFOG00015007161	chd1	94	82.219	ENSCSEG00000009553	chd1	80	81.725	Cynoglossus_semilaevis
ENSSFOG00015007161	chd1	90	82.496	ENSEASG00005016110	CHD1	87	82.166	Equus_asinus_asinus
ENSSFOG00015007161	chd1	91	86.780	ENSELUG00000017677	chd1	75	86.748	Esox_lucius
ENSSFOG00015007161	chd1	97	79.575	ENSFHEG00000021164	chd1	91	82.199	Fundulus_heteroclitus
ENSSFOG00015007161	chd1	90	85.059	ENSGMOG00000001537	chd1	67	87.097	Gadus_morhua
ENSSFOG00015007161	chd1	95	78.538	ENSGALG00000031327	-	75	80.769	Gallus_gallus
ENSSFOG00015007161	chd1	86	83.788	ENSGAFG00000019880	chd1	73	79.948	Gambusia_affinis
ENSSFOG00015007161	chd1	90	77.778	ENSGGOG00000011463	CHD1	72	77.124	Gorilla_gorilla
ENSSFOG00015007161	chd1	94	83.846	ENSHCOG00000014222	chd1	78	83.690	Hippocampus_comes
ENSSFOG00015007161	chd1	91	88.068	ENSIPUG00000001369	chd1	77	88.020	Ictalurus_punctatus
ENSSFOG00015007161	chd1	65	82.063	ENSLAFG00000023183	CHD1	82	82.751	Loxodonta_africana
ENSSFOG00015007161	chd1	90	82.602	ENSMFAG00000031226	CHD1	72	81.930	Macaca_fascicularis
ENSSFOG00015007161	chd1	91	82.296	ENSMMUG00000014090	CHD1	86	81.463	Macaca_mulatta
ENSSFOG00015007161	chd1	90	82.602	ENSMNEG00000045073	CHD1	72	81.930	Macaca_nemestrina
ENSSFOG00015007161	chd1	90	77.183	ENSMLEG00000041096	CHD1	71	78.743	Mandrillus_leucophaeus
ENSSFOG00015007161	chd1	93	83.792	ENSMZEG00005010957	chd1	94	84.202	Maylandia_zebra
ENSSFOG00015007161	chd1	88	82.137	ENSMOCG00000019121	Chd1	68	84.609	Microtus_ochrogaster
ENSSFOG00015007161	chd1	52	83.426	ENSMODG00000019266	-	94	83.871	Monodelphis_domestica
ENSSFOG00015007161	chd1	90	85.471	ENSMALG00000013317	chd1	88	83.946	Monopterus_albus
ENSSFOG00015007161	chd1	90	82.033	MGP_CAROLIEiJ_G0021099	Chd1	82	84.181	Mus_caroli
ENSSFOG00015007161	chd1	90	82.276	ENSMUSG00000023852	Chd1	82	84.294	Mus_musculus
ENSSFOG00015007161	chd1	90	82.343	MGP_PahariEiJ_G0023414	Chd1	82	84.086	Mus_pahari
ENSSFOG00015007161	chd1	91	84.846	ENSNBRG00000006860	chd1	74	87.151	Neolamprologus_brichardi
ENSSFOG00015007161	chd1	90	82.439	ENSNLEG00000014493	CHD1	72	81.766	Nomascus_leucogenys
ENSSFOG00015007161	chd1	90	83.171	ENSOANG00000004891	CHD1	75	84.101	Ornithorhynchus_anatinus
ENSSFOG00015007161	chd1	65	83.483	ENSORLG00015016725	chd1	85	82.198	Oryzias_latipes_hsok
ENSSFOG00015007161	chd1	90	80.922	ENSPPAG00000043367	CHD1	72	80.244	Pan_paniscus
ENSSFOG00015007161	chd1	90	82.358	ENSPTRG00000017103	CHD1	72	81.684	Pan_troglodytes
ENSSFOG00015007161	chd1	90	82.602	ENSPANG00000006387	CHD1	72	81.930	Papio_anubis
ENSSFOG00015007161	chd1	94	82.061	ENSPKIG00000024719	chd1	79	80.992	Paramormyrops_kingsleyae
ENSSFOG00015007161	chd1	91	85.668	ENSPMGG00000005785	chd1	93	85.889	Periophthalmus_magnuspinnatus
ENSSFOG00015007161	chd1	90	82.114	ENSPEMG00000015939	Chd1	72	82.041	Peromyscus_maniculatus_bairdii
ENSSFOG00015007161	chd1	53	83.590	ENSPLAG00000006473	-	73	83.613	Poecilia_latipinna
ENSSFOG00015007161	chd1	90	82.711	ENSPREG00000004209	chd1	75	81.470	Poecilia_reticulata
ENSSFOG00015007161	chd1	91	81.862	ENSRNOG00000014434	Chd1	86	81.626	Rattus_norvegicus
ENSSFOG00015007161	chd1	88	83.319	ENSRBIG00000044325	CHD1	68	85.198	Rhinopithecus_bieti
ENSSFOG00015007161	chd1	90	82.846	ENSRROG00000001726	CHD1	72	81.848	Rhinopithecus_roxellana
ENSSFOG00015007161	chd1	90	86.260	ENSSDUG00000018314	chd1	89	83.673	Seriola_dumerili
ENSSFOG00015007161	chd1	68	83.103	ENSSLDG00000017244	chd1	93	83.636	Seriola_lalandi_dorsalis
ENSSFOG00015007161	chd1	90	87.052	ENSSPAG00000007024	chd1	88	85.076	Stegastes_partitus
ENSSFOG00015007161	chd1	90	83.252	ENSSSCG00000014177	CHD1	83	83.184	Sus_scrofa
ENSSFOG00015007161	chd1	90	83.635	ENSTRUG00000010282	chd1	72	83.237	Takifugu_rubripes
ENSSFOG00015007161	chd1	79	87.112	ENSTNIG00000007101	chd1	87	83.986	Tetraodon_nigroviridis
ENSSFOG00015007161	chd1	91	79.575	ENSXCOG00000017184	chd1	74	79.672	Xiphophorus_couchianus
ENSSFOG00015007161	chd1	88	84.299	ENSXMAG00000014538	chd1	85	84.854	Xiphophorus_maculatus