EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015007588 (Gene tree)
Gene ID: 108939332
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein A1-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 2909 bases
Position: chrKV411187.1:11492208-11495116
Accession: 108939332
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015011770	RRM_1	PF00076.22	2.8e-35	1	2
ENSSFOP00015011770	RRM_1	PF00076.22	2.8e-35	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015011922	-	1083	XM_018760583	ENSSFOP00015011770	360 (aa)	XP_018616099	A0A1W5AK62

Gene Model

Click here to download ENSSFOG00015007588's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015007588's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015007588	-	73	36.882	ENSSFOG00015005893	hnrnpdl	66	34.314
ENSSFOG00015007588	-	65	38.767	ENSSFOG00015014964	-	52	41.304
ENSSFOG00015007588	-	73	33.585	ENSSFOG00015005913	hnrnpd	65	38.537
ENSSFOG00015007588	-	54	42.623	ENSSFOG00015021687	-	61	42.623
ENSSFOG00015007588	-	65	38.326	ENSSFOG00015005350	MSI1	58	40.331
ENSSFOG00015007588	-	50	41.176	ENSSFOG00015020384	-	51	41.176
ENSSFOG00015007588	-	55	94.444	ENSSFOG00015016280	hnrnpa1	60	92.683
ENSSFOG00015007588	-	50	64.000	ENSSFOG00015002650	HNRNPA0	58	63.636
ENSSFOG00015007588	-	68	35.366	ENSSFOG00015015634	hnrnpaba	68	39.500
ENSSFOG00015007588	-	54	81.633	ENSSFOG00015001814	hnrnpa3	56	79.703
ENSSFOG00015007588	-	67	34.177	ENSSFOG00015022519	hnrnpabb	57	38.350

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015007588	-	87	62.462	ENSCAFG00000006327	-	61	83.333	Canis_familiaris
ENSSFOG00015007588	-	54	65.816	ENSDNOG00000030945	-	69	66.154	Dasypus_novemcinctus
ENSSFOG00015007588	-	91	69.909	ENSDORG00000027821	-	53	89.899	Dipodomys_ordii
ENSSFOG00015007588	-	51	59.459	ENSETEG00000010244	-	85	70.000	Echinops_telfairi
ENSSFOG00015007588	-	52	62.434	ENSETEG00000004129	-	73	60.804	Echinops_telfairi
ENSSFOG00015007588	-	91	71.037	ENSFDAG00000021342	-	53	89.899	Fukomys_damarensis
ENSSFOG00015007588	-	91	71.037	ENSHGLG00000003139	HNRNPA1	53	89.899	Heterocephalus_glaber_female
ENSSFOG00015007588	-	90	56.026	ENSHGLG00100017719	-	90	55.625	Heterocephalus_glaber_male
ENSSFOG00015007588	-	91	71.037	ENSHGLG00100015974	HNRNPA1	53	89.899	Heterocephalus_glaber_male
ENSSFOG00015007588	-	79	51.237	ENSSTOG00000034519	-	76	51.773	Ictidomys_tridecemlineatus
ENSSFOG00015007588	-	91	51.652	ENSMNEG00000038539	-	51	62.564	Macaca_nemestrina
ENSSFOG00015007588	-	90	60.245	ENSMPUG00000003127	-	57	73.958	Mustela_putorius_furo
ENSSFOG00015007588	-	53	72.775	ENSMPUG00000008269	-	72	72.775	Mustela_putorius_furo
ENSSFOG00015007588	-	74	87.129	ENSOCUG00000028124	-	56	87.255	Oryctolagus_cuniculus
ENSSFOG00015007588	-	51	64.286	ENSPTIG00000013949	-	60	62.827	Panthera_tigris_altaica
ENSSFOG00015007588	-	51	85.235	ENSPANG00000017095	-	59	84.967	Papio_anubis
ENSSFOG00015007588	-	90	47.385	ENSTBEG00000007607	-	61	58.974	Tupaia_belangeri