EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015007883 (Gene tree)
Gene ID: 108926307
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 3420 bases
Position: chrKV410785.1:2183013-2186432
Accession: 108926307
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015012211	zf-CCCH	PF00642.24	2.6e-20	1	1
ENSSFOP00015012211	zf-CCHC	PF00098.23	5.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015012365	-	831	XM_018738920	ENSSFOP00015012211	276 (aa)	XP_018594436	A0A1W4Z1M6

Gene Model

Click here to download ENSSFOG00015007883's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015007883's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015007883	cpsf4	100	86.232	ENSG00000160917	CPSF4	100	97.321	Homo_sapiens
ENSSFOG00015007883	cpsf4	68	70.745	ENSAPOG00000004921	cpsf4	100	70.745	Acanthochromis_polyacanthus
ENSSFOG00015007883	cpsf4	100	85.870	ENSAMEG00000006252	CPSF4	100	85.145	Ailuropoda_melanoleuca
ENSSFOG00015007883	cpsf4	100	77.899	ENSACIG00000009248	cpsf4	100	77.899	Amphilophus_citrinellus
ENSSFOG00015007883	cpsf4	100	83.333	ENSAOCG00000019616	cpsf4	100	83.333	Amphiprion_ocellaris
ENSSFOG00015007883	cpsf4	100	83.333	ENSAPEG00000011679	cpsf4	100	83.333	Amphiprion_percula
ENSSFOG00015007883	cpsf4	100	82.971	ENSATEG00000007010	cpsf4	100	82.971	Anabas_testudineus
ENSSFOG00015007883	cpsf4	100	85.870	ENSACAG00000012941	CPSF4	89	85.145	Anolis_carolinensis
ENSSFOG00015007883	cpsf4	100	86.232	ENSANAG00000021360	CPSF4	100	85.507	Aotus_nancymaae
ENSSFOG00015007883	cpsf4	100	82.014	ENSACLG00000010374	cpsf4	100	82.246	Astatotilapia_calliptera
ENSSFOG00015007883	cpsf4	100	86.594	ENSAMXG00000031647	cpsf4	100	86.594	Astyanax_mexicanus
ENSSFOG00015007883	cpsf4	100	81.522	ENSBTAG00000002090	CPSF4	100	81.522	Bos_taurus
ENSSFOG00015007883	cpsf4	100	86.232	ENSCJAG00000015826	CPSF4	100	85.507	Callithrix_jacchus
ENSSFOG00015007883	cpsf4	100	85.870	ENSCAFG00000015036	CPSF4	99	86.905	Canis_familiaris
ENSSFOG00015007883	cpsf4	100	80.435	ENSCAFG00020014462	CPSF4	100	79.710	Canis_lupus_dingo
ENSSFOG00015007883	cpsf4	100	86.232	ENSCHIG00000014313	CPSF4	100	85.507	Capra_hircus
ENSSFOG00015007883	cpsf4	89	75.000	ENSTSYG00000008195	-	99	75.097	Carlito_syrichta
ENSSFOG00015007883	cpsf4	100	74.368	ENSTSYG00000014604	-	100	74.368	Carlito_syrichta
ENSSFOG00015007883	cpsf4	100	82.246	ENSTSYG00000005712	-	100	82.246	Carlito_syrichta
ENSSFOG00015007883	cpsf4	82	84.444	ENSCAPG00000013881	CPSF4	87	83.556	Cavia_aperea
ENSSFOG00015007883	cpsf4	100	81.522	ENSCPOG00000001783	CPSF4	100	81.522	Cavia_porcellus
ENSSFOG00015007883	cpsf4	100	86.232	ENSCCAG00000028291	CPSF4	100	85.507	Cebus_capucinus
ENSSFOG00015007883	cpsf4	100	86.232	ENSCATG00000038440	CPSF4	100	85.507	Cercocebus_atys
ENSSFOG00015007883	cpsf4	100	85.870	ENSCLAG00000007050	CPSF4	100	85.145	Chinchilla_lanigera
ENSSFOG00015007883	cpsf4	100	86.232	ENSCSAG00000017795	CPSF4	100	85.507	Chlorocebus_sabaeus
ENSSFOG00015007883	cpsf4	60	80.000	ENSCPBG00000010269	-	99	80.000	Chrysemys_picta_bellii
ENSSFOG00015007883	cpsf4	81	86.099	ENSCPBG00000020869	CPSF4	100	85.202	Chrysemys_picta_bellii
ENSSFOG00015007883	cpsf4	97	55.056	ENSCING00000021080	-	97	54.682	Ciona_intestinalis
ENSSFOG00015007883	cpsf4	96	53.004	ENSCSAVG00000011469	-	97	54.064	Ciona_savignyi
ENSSFOG00015007883	cpsf4	100	86.232	ENSCANG00000019384	CPSF4	100	85.507	Colobus_angolensis_palliatus
ENSSFOG00015007883	cpsf4	100	81.522	ENSCGRG00001024184	Cpsf4	100	81.522	Cricetulus_griseus_chok1gshd
ENSSFOG00015007883	cpsf4	100	85.870	ENSCGRG00000013892	Cpsf4	100	85.145	Cricetulus_griseus_crigri
ENSSFOG00015007883	cpsf4	100	81.522	ENSCSEG00000019055	cpsf4	100	81.884	Cynoglossus_semilaevis
ENSSFOG00015007883	cpsf4	100	82.246	ENSCVAG00000016528	cpsf4	100	82.246	Cyprinodon_variegatus
ENSSFOG00015007883	cpsf4	100	85.507	ENSDARG00000020217	cpsf4	100	85.560	Danio_rerio
ENSSFOG00015007883	cpsf4	100	86.232	ENSDNOG00000006344	CPSF4	100	85.507	Dasypus_novemcinctus
ENSSFOG00015007883	cpsf4	81	84.375	ENSDORG00000000742	Cpsf4	100	83.482	Dipodomys_ordii
ENSSFOG00015007883	cpsf4	100	54.181	FBgn0015621	Clp	99	54.795	Drosophila_melanogaster
ENSSFOG00015007883	cpsf4	68	95.758	ENSETEG00000002608	CPSF4	70	95.758	Echinops_telfairi
ENSSFOG00015007883	cpsf4	99	63.869	ENSEBUG00000012552	cpsf4	98	63.869	Eptatretus_burgeri
ENSSFOG00015007883	cpsf4	100	81.522	ENSEASG00005002487	CPSF4	100	81.522	Equus_asinus_asinus
ENSSFOG00015007883	cpsf4	100	85.870	ENSECAG00000007525	CPSF4	100	85.145	Equus_caballus
ENSSFOG00015007883	cpsf4	64	97.015	ENSEEUG00000002158	CPSF4	73	97.015	Erinaceus_europaeus
ENSSFOG00015007883	cpsf4	100	84.477	ENSELUG00000011481	cpsf4	100	83.871	Esox_lucius
ENSSFOG00015007883	cpsf4	100	85.870	ENSFCAG00000015070	CPSF4	100	85.145	Felis_catus
ENSSFOG00015007883	cpsf4	60	56.395	ENSFALG00000012906	-	100	56.395	Ficedula_albicollis
ENSSFOG00015007883	cpsf4	100	82.609	ENSFALG00000013799	CPSF4	100	82.609	Ficedula_albicollis
ENSSFOG00015007883	cpsf4	91	84.400	ENSFDAG00000014092	CPSF4	100	83.600	Fukomys_damarensis
ENSSFOG00015007883	cpsf4	100	81.071	ENSFHEG00000010880	cpsf4	100	81.522	Fundulus_heteroclitus
ENSSFOG00015007883	cpsf4	100	78.777	ENSGMOG00000002330	cpsf4	100	79.137	Gadus_morhua
ENSSFOG00015007883	cpsf4	99	34.826	ENSGALG00000004441	-	98	35.052	Gallus_gallus
ENSSFOG00015007883	cpsf4	100	83.333	ENSGALG00000004714	CPSF4	100	83.333	Gallus_gallus
ENSSFOG00015007883	cpsf4	100	82.609	ENSGAFG00000010580	cpsf4	100	82.609	Gambusia_affinis
ENSSFOG00015007883	cpsf4	100	75.899	ENSGACG00000007792	cpsf4	100	75.899	Gasterosteus_aculeatus
ENSSFOG00015007883	cpsf4	60	80.000	ENSGAGG00000020579	-	92	80.000	Gopherus_agassizii
ENSSFOG00015007883	cpsf4	100	87.319	ENSGAGG00000021835	CPSF4	100	86.594	Gopherus_agassizii
ENSSFOG00015007883	cpsf4	100	86.232	ENSGGOG00000015131	CPSF4	100	85.507	Gorilla_gorilla
ENSSFOG00015007883	cpsf4	100	82.014	ENSHBUG00000013699	cpsf4	100	82.246	Haplochromis_burtoni
ENSSFOG00015007883	cpsf4	100	85.560	ENSHGLG00000017150	CPSF4	100	84.838	Heterocephalus_glaber_female
ENSSFOG00015007883	cpsf4	64	66.667	ENSHGLG00100017302	-	89	66.316	Heterocephalus_glaber_male
ENSSFOG00015007883	cpsf4	87	82.645	ENSHGLG00100009215	-	100	81.818	Heterocephalus_glaber_male
ENSSFOG00015007883	cpsf4	100	79.348	ENSHCOG00000004397	cpsf4	100	79.348	Hippocampus_comes
ENSSFOG00015007883	cpsf4	100	86.232	ENSIPUG00000017147	cpsf4	100	86.232	Ictalurus_punctatus
ENSSFOG00015007883	cpsf4	100	85.870	ENSSTOG00000001688	CPSF4	100	85.145	Ictidomys_tridecemlineatus
ENSSFOG00015007883	cpsf4	100	85.870	ENSJJAG00000019426	Cpsf4	100	85.145	Jaculus_jaculus
ENSSFOG00015007883	cpsf4	100	80.797	ENSKMAG00000015642	cpsf4	100	80.797	Kryptolebias_marmoratus
ENSSFOG00015007883	cpsf4	100	58.123	ENSLACG00000018470	-	100	56.786	Latimeria_chalumnae
ENSSFOG00015007883	cpsf4	100	85.870	ENSLACG00000010938	CPSF4	100	85.145	Latimeria_chalumnae
ENSSFOG00015007883	cpsf4	100	88.043	ENSLOCG00000004814	cpsf4	100	87.319	Lepisosteus_oculatus
ENSSFOG00015007883	cpsf4	100	85.507	ENSLAFG00000000159	CPSF4	100	84.783	Loxodonta_africana
ENSSFOG00015007883	cpsf4	100	86.232	ENSMFAG00000001462	CPSF4	100	85.507	Macaca_fascicularis
ENSSFOG00015007883	cpsf4	100	86.232	ENSMMUG00000019191	CPSF4	100	85.507	Macaca_mulatta
ENSSFOG00015007883	cpsf4	100	86.232	ENSMNEG00000032306	CPSF4	100	85.507	Macaca_nemestrina
ENSSFOG00015007883	cpsf4	100	86.232	ENSMLEG00000034721	CPSF4	100	85.507	Mandrillus_leucophaeus
ENSSFOG00015007883	cpsf4	100	82.246	ENSMAMG00000006244	cpsf4	100	81.884	Mastacembelus_armatus
ENSSFOG00015007883	cpsf4	100	82.014	ENSMZEG00005007515	cpsf4	100	82.246	Maylandia_zebra
ENSSFOG00015007883	cpsf4	88	81.405	ENSMGAG00000004235	CPSF4	100	81.405	Meleagris_gallopavo
ENSSFOG00015007883	cpsf4	100	85.870	ENSMAUG00000021253	Cpsf4	100	85.145	Mesocricetus_auratus
ENSSFOG00015007883	cpsf4	100	85.870	ENSMICG00000017429	CPSF4	100	85.145	Microcebus_murinus
ENSSFOG00015007883	cpsf4	100	85.870	ENSMOCG00000014901	Cpsf4	100	85.145	Microtus_ochrogaster
ENSSFOG00015007883	cpsf4	100	82.246	ENSMMOG00000001813	cpsf4	95	87.273	Mola_mola
ENSSFOG00015007883	cpsf4	100	87.681	ENSMODG00000001367	CPSF4	100	86.957	Monodelphis_domestica
ENSSFOG00015007883	cpsf4	100	83.333	ENSMALG00000012611	cpsf4	100	82.796	Monopterus_albus
ENSSFOG00015007883	cpsf4	100	85.870	MGP_CAROLIEiJ_G0028012	Cpsf4	100	85.145	Mus_caroli
ENSSFOG00015007883	cpsf4	100	85.870	ENSMUSG00000029625	Cpsf4	100	85.145	Mus_musculus
ENSSFOG00015007883	cpsf4	100	85.870	MGP_PahariEiJ_G0024581	Cpsf4	100	85.145	Mus_pahari
ENSSFOG00015007883	cpsf4	100	85.870	MGP_SPRETEiJ_G0029013	Cpsf4	100	85.145	Mus_spretus
ENSSFOG00015007883	cpsf4	100	85.870	ENSMPUG00000016508	CPSF4	100	85.145	Mustela_putorius_furo
ENSSFOG00015007883	cpsf4	88	78.926	ENSMLUG00000010980	CPSF4	100	78.926	Myotis_lucifugus
ENSSFOG00015007883	cpsf4	100	86.232	ENSNGAG00000001567	Cpsf4	100	85.507	Nannospalax_galili
ENSSFOG00015007883	cpsf4	91	80.784	ENSNBRG00000003943	cpsf4	98	81.349	Neolamprologus_brichardi
ENSSFOG00015007883	cpsf4	100	83.333	ENSNLEG00000011074	CPSF4	100	83.333	Nomascus_leucogenys
ENSSFOG00015007883	cpsf4	100	87.681	ENSMEUG00000006955	CPSF4	100	86.957	Notamacropus_eugenii
ENSSFOG00015007883	cpsf4	100	85.507	ENSOPRG00000013663	CPSF4	100	84.783	Ochotona_princeps
ENSSFOG00015007883	cpsf4	100	85.870	ENSODEG00000011181	-	100	85.145	Octodon_degus
ENSSFOG00015007883	cpsf4	99	69.118	ENSODEG00000018283	-	91	69.118	Octodon_degus
ENSSFOG00015007883	cpsf4	100	66.429	ENSODEG00000009779	-	100	66.429	Octodon_degus
ENSSFOG00015007883	cpsf4	100	82.246	ENSONIG00000008495	cpsf4	100	82.246	Oreochromis_niloticus
ENSSFOG00015007883	cpsf4	88	83.884	ENSOANG00000007729	CPSF4	100	83.884	Ornithorhynchus_anatinus
ENSSFOG00015007883	cpsf4	100	52.083	ENSOANG00000009568	-	100	52.448	Ornithorhynchus_anatinus
ENSSFOG00015007883	cpsf4	100	85.870	ENSOCUG00000002437	CPSF4	70	85.145	Oryctolagus_cuniculus
ENSSFOG00015007883	cpsf4	100	82.246	ENSORLG00000022798	cpsf4	100	82.246	Oryzias_latipes
ENSSFOG00015007883	cpsf4	100	82.246	ENSORLG00020008548	cpsf4	100	82.246	Oryzias_latipes_hni
ENSSFOG00015007883	cpsf4	100	81.884	ENSORLG00015019575	cpsf4	100	81.884	Oryzias_latipes_hsok
ENSSFOG00015007883	cpsf4	100	80.435	ENSOMEG00000005176	cpsf4	100	80.435	Oryzias_melastigma
ENSSFOG00015007883	cpsf4	100	85.870	ENSOGAG00000010884	CPSF4	100	85.145	Otolemur_garnettii
ENSSFOG00015007883	cpsf4	100	76.157	ENSOARG00000018668	CPSF4	100	75.445	Ovis_aries
ENSSFOG00015007883	cpsf4	100	86.232	ENSPPAG00000043355	CPSF4	100	85.507	Pan_paniscus
ENSSFOG00015007883	cpsf4	100	85.870	ENSPPRG00000003134	CPSF4	100	85.145	Panthera_pardus
ENSSFOG00015007883	cpsf4	90	85.141	ENSPTIG00000005604	CPSF4	90	84.337	Panthera_tigris_altaica
ENSSFOG00015007883	cpsf4	100	86.232	ENSPTRG00000019453	CPSF4	100	85.507	Pan_troglodytes
ENSSFOG00015007883	cpsf4	100	86.232	ENSPANG00000023123	CPSF4	100	85.507	Papio_anubis
ENSSFOG00015007883	cpsf4	100	93.841	ENSPKIG00000014278	cpsf4	100	93.841	Paramormyrops_kingsleyae
ENSSFOG00015007883	cpsf4	82	56.444	ENSPSIG00000018198	-	100	55.556	Pelodiscus_sinensis
ENSSFOG00015007883	cpsf4	81	85.650	ENSPSIG00000011229	CPSF4	100	84.753	Pelodiscus_sinensis
ENSSFOG00015007883	cpsf4	100	72.101	ENSPMGG00000017735	cpsf4	100	72.101	Periophthalmus_magnuspinnatus
ENSSFOG00015007883	cpsf4	100	85.870	ENSPEMG00000004508	Cpsf4	100	85.145	Peromyscus_maniculatus_bairdii
ENSSFOG00015007883	cpsf4	100	87.681	ENSPCIG00000024776	CPSF4	100	86.957	Phascolarctos_cinereus
ENSSFOG00015007883	cpsf4	100	82.609	ENSPFOG00000014912	cpsf4	100	82.609	Poecilia_formosa
ENSSFOG00015007883	cpsf4	100	75.000	ENSPLAG00000009599	cpsf4	100	75.000	Poecilia_latipinna
ENSSFOG00015007883	cpsf4	100	82.609	ENSPMEG00000009790	cpsf4	100	82.609	Poecilia_mexicana
ENSSFOG00015007883	cpsf4	100	81.884	ENSPREG00000018166	cpsf4	100	81.884	Poecilia_reticulata
ENSSFOG00015007883	cpsf4	87	84.647	ENSPPYG00000017378	CPSF4	100	83.817	Pongo_abelii
ENSSFOG00015007883	cpsf4	100	85.145	ENSPCAG00000001892	CPSF4	100	84.420	Procavia_capensis
ENSSFOG00015007883	cpsf4	100	85.870	ENSPCOG00000012771	CPSF4	100	85.145	Propithecus_coquereli
ENSSFOG00015007883	cpsf4	100	80.072	ENSPVAG00000007531	CPSF4	100	79.348	Pteropus_vampyrus
ENSSFOG00015007883	cpsf4	100	82.014	ENSPNYG00000018559	cpsf4	100	82.246	Pundamilia_nyererei
ENSSFOG00015007883	cpsf4	100	88.406	ENSPNAG00000003736	cpsf4	100	88.406	Pygocentrus_nattereri
ENSSFOG00015007883	cpsf4	100	81.159	ENSRNOG00000000985	Cpsf4	100	81.159	Rattus_norvegicus
ENSSFOG00015007883	cpsf4	87	85.062	ENSRBIG00000033886	CPSF4	100	84.232	Rhinopithecus_bieti
ENSSFOG00015007883	cpsf4	100	81.884	ENSRROG00000040431	CPSF4	100	81.884	Rhinopithecus_roxellana
ENSSFOG00015007883	cpsf4	100	86.232	ENSSBOG00000020493	CPSF4	100	85.507	Saimiri_boliviensis_boliviensis
ENSSFOG00015007883	cpsf4	100	87.681	ENSSHAG00000011533	CPSF4	100	86.957	Sarcophilus_harrisii
ENSSFOG00015007883	cpsf4	100	78.261	ENSSMAG00000006374	cpsf4	100	78.261	Scophthalmus_maximus
ENSSFOG00015007883	cpsf4	100	83.333	ENSSDUG00000018887	cpsf4	100	83.333	Seriola_dumerili
ENSSFOG00015007883	cpsf4	100	83.333	ENSSLDG00000019078	cpsf4	100	83.333	Seriola_lalandi_dorsalis
ENSSFOG00015007883	cpsf4	87	84.647	ENSSARG00000012416	CPSF4	100	83.817	Sorex_araneus
ENSSFOG00015007883	cpsf4	100	87.319	ENSSPUG00000003549	CPSF4	100	86.594	Sphenodon_punctatus
ENSSFOG00015007883	cpsf4	96	56.604	ENSSPUG00000014803	-	97	56.604	Sphenodon_punctatus
ENSSFOG00015007883	cpsf4	100	78.261	ENSSPAG00000006174	cpsf4	100	78.261	Stegastes_partitus
ENSSFOG00015007883	cpsf4	100	81.522	ENSSSCG00000026896	CPSF4	100	81.522	Sus_scrofa
ENSSFOG00015007883	cpsf4	100	81.655	ENSTGUG00000007552	CPSF4	100	81.655	Taeniopygia_guttata
ENSSFOG00015007883	cpsf4	100	79.710	ENSTRUG00000024220	cpsf4	100	79.710	Takifugu_rubripes
ENSSFOG00015007883	cpsf4	100	79.348	ENSTNIG00000006265	cpsf4	100	79.348	Tetraodon_nigroviridis
ENSSFOG00015007883	cpsf4	87	75.934	ENSTBEG00000011406	CPSF4	100	75.104	Tupaia_belangeri
ENSSFOG00015007883	cpsf4	100	72.101	ENSTTRG00000003007	CPSF4	100	72.101	Tursiops_truncatus
ENSSFOG00015007883	cpsf4	92	79.921	ENSUAMG00000008051	CPSF4	85	79.921	Ursus_americanus
ENSSFOG00015007883	cpsf4	100	81.159	ENSUMAG00000009474	CPSF4	100	81.159	Ursus_maritimus
ENSSFOG00015007883	cpsf4	100	81.522	ENSVVUG00000008824	CPSF4	100	81.522	Vulpes_vulpes
ENSSFOG00015007883	cpsf4	99	59.206	ENSXETG00000004641	cpsf4l	99	59.206	Xenopus_tropicalis
ENSSFOG00015007883	cpsf4	100	81.469	ENSXETG00000009892	cpsf4	100	81.119	Xenopus_tropicalis
ENSSFOG00015007883	cpsf4	100	82.246	ENSXCOG00000016040	cpsf4	100	82.246	Xiphophorus_couchianus
ENSSFOG00015007883	cpsf4	100	82.609	ENSXMAG00000024670	cpsf4	100	82.609	Xiphophorus_maculatus