EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015007909 (Gene tree)
Gene ID: 108926404
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 6942 bases
Position: chrKV410785.1:2185942-2192883
Accession: 108926404
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015012285	PPR	PF01535.20	1.6e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015012440	-	4638	XM_018739072	ENSSFOP00015012285	736 (aa)	XP_018594588	A0A1W4Z1N2

Gene Model

Click here to download ENSSFOG00015007909's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015007909's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015007909	ptcd1	81	54.295	ENSG00000248919	ATP5MF-PTCD1	79	53.871	Homo_sapiens
ENSSFOG00015007909	ptcd1	81	54.295	ENSG00000106246	PTCD1	85	53.871	Homo_sapiens
ENSSFOG00015007909	ptcd1	77	51.664	ENSAPOG00000010679	ptcd1	86	51.489	Acanthochromis_polyacanthus
ENSSFOG00015007909	ptcd1	84	53.532	ENSAMEG00000006224	-	81	53.532	Ailuropoda_melanoleuca
ENSSFOG00015007909	ptcd1	83	53.301	ENSACIG00000017861	ptcd1	87	53.301	Amphilophus_citrinellus
ENSSFOG00015007909	ptcd1	79	52.218	ENSAOCG00000022617	ptcd1	85	52.048	Amphiprion_ocellaris
ENSSFOG00015007909	ptcd1	83	52.769	ENSAOCG00000020741	-	84	52.606	Amphiprion_ocellaris
ENSSFOG00015007909	ptcd1	83	52.443	ENSAPEG00000022632	ptcd1	84	52.443	Amphiprion_percula
ENSSFOG00015007909	ptcd1	82	54.664	ENSATEG00000007016	ptcd1	82	54.828	Anabas_testudineus
ENSSFOG00015007909	ptcd1	82	56.137	ENSAPLG00000006862	-	93	56.137	Anas_platyrhynchos
ENSSFOG00015007909	ptcd1	83	55.821	ENSACAG00000012871	-	80	55.183	Anolis_carolinensis
ENSSFOG00015007909	ptcd1	82	52.760	ENSANAG00000035790	-	93	49.705	Aotus_nancymaae
ENSSFOG00015007909	ptcd1	83	53.440	ENSACLG00000002824	ptcd1	84	53.120	Astatotilapia_calliptera
ENSSFOG00015007909	ptcd1	82	54.702	ENSAMXG00000037292	ptcd1	93	52.219	Astyanax_mexicanus
ENSSFOG00015007909	ptcd1	85	52.411	ENSBTAG00000020440	-	77	52.566	Bos_taurus
ENSSFOG00015007909	ptcd1	82	53.883	ENSCJAG00000015815	-	86	53.623	Callithrix_jacchus
ENSSFOG00015007909	ptcd1	87	53.846	ENSCAFG00000015055	-	84	53.846	Canis_familiaris
ENSSFOG00015007909	ptcd1	87	53.846	ENSCAFG00020014480	-	84	53.692	Canis_lupus_dingo
ENSSFOG00015007909	ptcd1	86	53.005	ENSCHIG00000027000	-	89	52.381	Capra_hircus
ENSSFOG00015007909	ptcd1	85	53.386	ENSTSYG00000029495	-	88	53.155	Carlito_syrichta
ENSSFOG00015007909	ptcd1	85	53.727	ENSCAPG00000014660	-	95	53.678	Cavia_aperea
ENSSFOG00015007909	ptcd1	85	54.348	ENSCPOG00000001780	-	88	54.304	Cavia_porcellus
ENSSFOG00015007909	ptcd1	83	52.941	ENSCCAG00000034025	-	87	52.623	Cebus_capucinus
ENSSFOG00015007909	ptcd1	82	54.160	ENSCATG00000040859	-	85	53.571	Cercocebus_atys
ENSSFOG00015007909	ptcd1	84	53.894	ENSCLAG00000006354	-	88	54.101	Chinchilla_lanigera
ENSSFOG00015007909	ptcd1	76	54.306	ENSCSAG00000017794	-	82	53.671	Chlorocebus_sabaeus
ENSSFOG00015007909	ptcd1	83	55.763	ENSCPBG00000020866	-	89	53.869	Chrysemys_picta_bellii
ENSSFOG00015007909	ptcd1	82	54.383	ENSCANG00000023441	-	86	53.896	Colobus_angolensis_palliatus
ENSSFOG00015007909	ptcd1	86	52.329	ENSCGRG00001023686	Ptcd1	90	51.863	Cricetulus_griseus_chok1gshd
ENSSFOG00015007909	ptcd1	83	53.291	ENSCGRG00000015031	Ptcd1	86	52.809	Cricetulus_griseus_crigri
ENSSFOG00015007909	ptcd1	80	54.167	ENSCSEG00000002378	ptcd1	80	54.667	Cynoglossus_semilaevis
ENSSFOG00015007909	ptcd1	82	53.808	ENSCVAG00000003621	ptcd1	87	54.774	Cyprinodon_variegatus
ENSSFOG00015007909	ptcd1	84	53.485	ENSCVAG00000015826	ptcd1	85	53.226	Cyprinodon_variegatus
ENSSFOG00015007909	ptcd1	83	55.751	ENSDARG00000076176	ptcd1	88	55.751	Danio_rerio
ENSSFOG00015007909	ptcd1	84	54.016	ENSDNOG00000009957	-	92	51.714	Dasypus_novemcinctus
ENSSFOG00015007909	ptcd1	84	52.997	ENSDORG00000000740	Ptcd1	89	52.765	Dipodomys_ordii
ENSSFOG00015007909	ptcd1	88	40.490	ENSEBUG00000014515	ptcd1	99	41.397	Eptatretus_burgeri
ENSSFOG00015007909	ptcd1	85	52.329	ENSEASG00005002480	-	88	53.727	Equus_asinus_asinus
ENSSFOG00015007909	ptcd1	85	52.950	ENSECAG00000016617	-	88	53.727	Equus_caballus
ENSSFOG00015007909	ptcd1	87	50.817	ENSELUG00000016517	ptcd1	90	50.520	Esox_lucius
ENSSFOG00015007909	ptcd1	87	53.130	ENSFCAG00000015069	-	90	53.374	Felis_catus
ENSSFOG00015007909	ptcd1	83	56.300	ENSFALG00000013803	-	86	55.981	Ficedula_albicollis
ENSSFOG00015007909	ptcd1	85	53.302	ENSFDAG00000006393	-	92	51.259	Fukomys_damarensis
ENSSFOG00015007909	ptcd1	72	52.363	ENSFHEG00000012491	ptcd1	87	52.174	Fundulus_heteroclitus
ENSSFOG00015007909	ptcd1	79	51.178	ENSGMOG00000007639	ptcd1	91	50.673	Gadus_morhua
ENSSFOG00015007909	ptcd1	82	55.556	ENSGALG00000004711	-	85	55.161	Gallus_gallus
ENSSFOG00015007909	ptcd1	81	52.326	ENSGAFG00000013175	ptcd1	83	52.326	Gambusia_affinis
ENSSFOG00015007909	ptcd1	82	54.341	ENSGACG00000016607	ptcd1	91	54.221	Gasterosteus_aculeatus
ENSSFOG00015007909	ptcd1	77	55.892	ENSGAGG00000021832	-	85	56.971	Gopherus_agassizii
ENSSFOG00015007909	ptcd1	83	54.167	ENSGGOG00000015123	-	87	53.760	Gorilla_gorilla
ENSSFOG00015007909	ptcd1	83	53.120	ENSHBUG00000018275	ptcd1	84	52.640	Haplochromis_burtoni
ENSSFOG00015007909	ptcd1	89	52.303	ENSHGLG00000017621	-	92	52.774	Heterocephalus_glaber_female
ENSSFOG00015007909	ptcd1	89	52.303	ENSHGLG00100007218	-	92	52.774	Heterocephalus_glaber_male
ENSSFOG00015007909	ptcd1	82	50.993	ENSHCOG00000010784	ptcd1	83	51.490	Hippocampus_comes
ENSSFOG00015007909	ptcd1	87	53.467	ENSSTOG00000001682	-	89	53.313	Ictidomys_tridecemlineatus
ENSSFOG00015007909	ptcd1	85	54.304	ENSJJAG00000000319	Ptcd1	90	55.000	Jaculus_jaculus
ENSSFOG00015007909	ptcd1	81	51.980	ENSKMAG00000008708	ptcd1	82	52.145	Kryptolebias_marmoratus
ENSSFOG00015007909	ptcd1	81	53.377	ENSLBEG00000008061	ptcd1	81	53.530	Labrus_bergylta
ENSSFOG00015007909	ptcd1	89	55.838	ENSLACG00000011172	ptcd1	90	56.222	Latimeria_chalumnae
ENSSFOG00015007909	ptcd1	90	61.891	ENSLOCG00000004833	ptcd1	98	59.380	Lepisosteus_oculatus
ENSSFOG00015007909	ptcd1	84	53.918	ENSLAFG00000002588	-	98	50.210	Loxodonta_africana
ENSSFOG00015007909	ptcd1	82	54.160	ENSMFAG00000041324	-	85	53.571	Macaca_fascicularis
ENSSFOG00015007909	ptcd1	82	53.997	ENSMMUG00000030408	-	85	53.409	Macaca_mulatta
ENSSFOG00015007909	ptcd1	82	54.160	ENSMNEG00000043786	-	85	53.571	Macaca_nemestrina
ENSSFOG00015007909	ptcd1	82	39.672	ENSMLEG00000031179	-	83	41.080	Mandrillus_leucophaeus
ENSSFOG00015007909	ptcd1	86	52.744	ENSMAMG00000007623	ptcd1	88	52.252	Mastacembelus_armatus
ENSSFOG00015007909	ptcd1	83	53.440	ENSMZEG00005012722	ptcd1	84	53.120	Maylandia_zebra
ENSSFOG00015007909	ptcd1	87	53.130	ENSMGAG00000004211	-	84	53.130	Meleagris_gallopavo
ENSSFOG00015007909	ptcd1	81	53.115	ENSMICG00000017428	-	87	51.817	Microcebus_murinus
ENSSFOG00015007909	ptcd1	87	51.310	ENSMMOG00000020243	ptcd1	95	52.441	Mola_mola
ENSSFOG00015007909	ptcd1	83	56.300	ENSMODG00000001350	-	85	56.300	Monodelphis_domestica
ENSSFOG00015007909	ptcd1	83	53.301	ENSMALG00000018442	ptcd1	83	53.045	Monopterus_albus
ENSSFOG00015007909	ptcd1	84	54.054	MGP_CAROLIEiJ_G0028011	Ptcd1	88	53.736	Mus_caroli
ENSSFOG00015007909	ptcd1	84	53.968	ENSMUSG00000029624	Ptcd1	88	53.968	Mus_musculus
ENSSFOG00015007909	ptcd1	86	54.037	MGP_PahariEiJ_G0024580	Ptcd1	90	53.416	Mus_pahari
ENSSFOG00015007909	ptcd1	84	53.651	MGP_SPRETEiJ_G0029012	Ptcd1	88	53.651	Mus_spretus
ENSSFOG00015007909	ptcd1	82	53.945	ENSMPUG00000016518	-	89	52.615	Mustela_putorius_furo
ENSSFOG00015007909	ptcd1	83	54.114	ENSMLUG00000010994	-	81	54.173	Myotis_lucifugus
ENSSFOG00015007909	ptcd1	85	52.449	ENSNBRG00000010079	ptcd1	88	52.291	Neolamprologus_brichardi
ENSSFOG00015007909	ptcd1	74	55.776	ENSNLEG00000011060	-	90	55.273	Nomascus_leucogenys
ENSSFOG00015007909	ptcd1	85	54.773	ENSMEUG00000006930	-	89	54.773	Notamacropus_eugenii
ENSSFOG00015007909	ptcd1	75	52.239	ENSOPRG00000013647	-	78	54.478	Ochotona_princeps
ENSSFOG00015007909	ptcd1	80	52.492	ENSONIG00000003168	ptcd1	95	52.326	Oreochromis_niloticus
ENSSFOG00015007909	ptcd1	81	48.875	ENSOANG00000007728	-	80	48.710	Ornithorhynchus_anatinus
ENSSFOG00015007909	ptcd1	84	53.870	ENSOCUG00000010584	-	85	53.566	Oryctolagus_cuniculus
ENSSFOG00015007909	ptcd1	86	51.020	ENSORLG00000009275	ptcd1	89	51.020	Oryzias_latipes
ENSSFOG00015007909	ptcd1	86	50.395	ENSORLG00020000988	ptcd1	89	50.395	Oryzias_latipes_hni
ENSSFOG00015007909	ptcd1	86	50.315	ENSORLG00015010557	ptcd1	89	50.315	Oryzias_latipes_hsok
ENSSFOG00015007909	ptcd1	84	52.013	ENSOMEG00000020627	ptcd1	89	51.530	Oryzias_melastigma
ENSSFOG00015007909	ptcd1	83	51.987	ENSOGAG00000010877	-	88	52.215	Otolemur_garnettii
ENSSFOG00015007909	ptcd1	86	49.461	ENSOARG00000018676	-	90	49.077	Ovis_aries
ENSSFOG00015007909	ptcd1	81	53.859	ENSPPAG00000036024	-	85	53.226	Pan_paniscus
ENSSFOG00015007909	ptcd1	87	53.282	ENSPPRG00000003478	-	91	53.374	Panthera_pardus
ENSSFOG00015007909	ptcd1	81	53.859	ENSPTRG00000019452	-	85	53.344	Pan_troglodytes
ENSSFOG00015007909	ptcd1	82	54.397	ENSPANG00000016730	-	85	53.160	Papio_anubis
ENSSFOG00015007909	ptcd1	92	61.439	ENSPKIG00000014215	ptcd1	98	58.890	Paramormyrops_kingsleyae
ENSSFOG00015007909	ptcd1	81	54.412	ENSPSIG00000011184	-	99	54.605	Pelodiscus_sinensis
ENSSFOG00015007909	ptcd1	71	40.260	ENSPMAG00000009667	ptcd1	100	40.260	Petromyzon_marinus
ENSSFOG00015007909	ptcd1	83	54.984	ENSPCIG00000024778	-	90	52.679	Phascolarctos_cinereus
ENSSFOG00015007909	ptcd1	81	51.316	ENSPFOG00000004458	ptcd1	86	50.558	Poecilia_formosa
ENSSFOG00015007909	ptcd1	81	51.821	ENSPLAG00000011051	ptcd1	84	51.140	Poecilia_latipinna
ENSSFOG00015007909	ptcd1	81	51.809	ENSPMEG00000020547	ptcd1	86	50.877	Poecilia_mexicana
ENSSFOG00015007909	ptcd1	80	51.926	ENSPREG00000000059	ptcd1	83	51.581	Poecilia_reticulata
ENSSFOG00015007909	ptcd1	82	53.994	ENSPPYG00000017377	-	91	53.674	Pongo_abelii
ENSSFOG00015007909	ptcd1	74	57.143	ENSPCAG00000001852	-	85	57.143	Procavia_capensis
ENSSFOG00015007909	ptcd1	83	52.818	ENSPCOG00000018596	-	87	52.724	Propithecus_coquereli
ENSSFOG00015007909	ptcd1	54	63.000	ENSPVAG00000007529	-	61	63.000	Pteropus_vampyrus
ENSSFOG00015007909	ptcd1	83	53.376	ENSPNYG00000019993	ptcd1	84	52.894	Pundamilia_nyererei
ENSSFOG00015007909	ptcd1	84	54.358	ENSPNAG00000014931	ptcd1	90	55.222	Pygocentrus_nattereri
ENSSFOG00015007909	ptcd1	86	53.333	ENSRNOG00000000987	Ptcd1	91	53.106	Rattus_norvegicus
ENSSFOG00015007909	ptcd1	82	54.281	ENSRBIG00000043393	-	86	53.796	Rhinopithecus_bieti
ENSSFOG00015007909	ptcd1	82	54.281	ENSRROG00000036420	-	86	53.796	Rhinopithecus_roxellana
ENSSFOG00015007909	ptcd1	83	53.130	ENSSBOG00000024114	-	87	53.035	Saimiri_boliviensis_boliviensis
ENSSFOG00015007909	ptcd1	90	51.689	ENSSHAG00000011376	-	93	53.834	Sarcophilus_harrisii
ENSSFOG00015007909	ptcd1	80	51.913	ENSSMAG00000000218	ptcd1	91	52.080	Scophthalmus_maximus
ENSSFOG00015007909	ptcd1	83	53.016	ENSSDUG00000015671	ptcd1	87	53.016	Seriola_dumerili
ENSSFOG00015007909	ptcd1	81	53.719	ENSSLDG00000014261	ptcd1	86	51.613	Seriola_lalandi_dorsalis
ENSSFOG00015007909	ptcd1	82	57.003	ENSSPUG00000003540	-	83	56.840	Sphenodon_punctatus
ENSSFOG00015007909	ptcd1	82	53.821	ENSSPAG00000011049	ptcd1	82	53.659	Stegastes_partitus
ENSSFOG00015007909	ptcd1	86	52.000	ENSSSCG00000007622	-	95	52.000	Sus_scrofa
ENSSFOG00015007909	ptcd1	83	56.543	ENSTGUG00000007563	-	98	56.704	Taeniopygia_guttata
ENSSFOG00015007909	ptcd1	82	54.098	ENSTRUG00000013471	ptcd1	81	53.934	Takifugu_rubripes
ENSSFOG00015007909	ptcd1	82	53.473	ENSTNIG00000008271	ptcd1	86	53.473	Tetraodon_nigroviridis
ENSSFOG00015007909	ptcd1	86	53.067	ENSTBEG00000011021	-	90	52.842	Tupaia_belangeri
ENSSFOG00015007909	ptcd1	86	50.691	ENSTTRG00000003006	-	90	50.077	Tursiops_truncatus
ENSSFOG00015007909	ptcd1	84	53.292	ENSUAMG00000008049	-	87	53.375	Ursus_americanus
ENSSFOG00015007909	ptcd1	87	54.462	ENSVVUG00000008836	-	90	54.000	Vulpes_vulpes
ENSSFOG00015007909	ptcd1	82	53.094	ENSXETG00000009891	ptcd1	87	52.572	Xenopus_tropicalis
ENSSFOG00015007909	ptcd1	84	50.806	ENSXMAG00000015540	ptcd1	85	50.968	Xiphophorus_maculatus