EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015008311 (Gene tree)
Gene ID: 108918865
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 4870 bases
Position: chrKV411259.1:1123977-1128846
Accession: 108918865
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015012863	TUDOR	PF00567.24	2.3e-06	1	1
ENSSFOP00015012863	SMN	PF06003.12	2.8e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015013025	-	1845	XM_018726471	ENSSFOP00015012863	237 (aa)	XP_018581987	A0A0P7UMM0

Gene Model

Click here to download ENSSFOG00015008311's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015008311's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015008311	smndc1	100	80.252	ENSG00000119953	SMNDC1	100	80.252	Homo_sapiens
ENSSFOG00015008311	smndc1	100	79.412	ENSAPOG00000021772	smndc1	100	79.412	Acanthochromis_polyacanthus
ENSSFOG00015008311	smndc1	100	79.832	ENSAMEG00000005251	SMNDC1	100	79.832	Ailuropoda_melanoleuca
ENSSFOG00015008311	smndc1	100	79.832	ENSACIG00000004819	smndc1	100	79.832	Amphilophus_citrinellus
ENSSFOG00015008311	smndc1	100	79.412	ENSAOCG00000017869	smndc1	100	79.412	Amphiprion_ocellaris
ENSSFOG00015008311	smndc1	100	79.412	ENSAPEG00000007752	smndc1	100	79.412	Amphiprion_percula
ENSSFOG00015008311	smndc1	100	80.252	ENSATEG00000006830	smndc1	100	80.252	Anabas_testudineus
ENSSFOG00015008311	smndc1	83	79.798	ENSAPLG00000004322	SMNDC1	100	79.798	Anas_platyrhynchos
ENSSFOG00015008311	smndc1	100	80.672	ENSACAG00000005983	SMNDC1	100	80.672	Anolis_carolinensis
ENSSFOG00015008311	smndc1	100	79.832	ENSANAG00000032875	SMNDC1	100	79.832	Aotus_nancymaae
ENSSFOG00015008311	smndc1	100	78.992	ENSACLG00000016360	smndc1	100	78.992	Astatotilapia_calliptera
ENSSFOG00015008311	smndc1	100	79.325	ENSAMXG00000020310	smndc1	100	79.325	Astyanax_mexicanus
ENSSFOG00015008311	smndc1	100	79.412	ENSBTAG00000000551	SMNDC1	100	79.412	Bos_taurus
ENSSFOG00015008311	smndc1	100	79.832	ENSCJAG00000018624	SMNDC1	100	79.832	Callithrix_jacchus
ENSSFOG00015008311	smndc1	100	79.832	ENSCAFG00000010720	SMNDC1	100	79.832	Canis_familiaris
ENSSFOG00015008311	smndc1	100	79.832	ENSCAFG00020011913	SMNDC1	100	79.832	Canis_lupus_dingo
ENSSFOG00015008311	smndc1	100	79.412	ENSCHIG00000010604	SMNDC1	100	79.412	Capra_hircus
ENSSFOG00015008311	smndc1	100	80.252	ENSTSYG00000026454	SMNDC1	100	80.252	Carlito_syrichta
ENSSFOG00015008311	smndc1	100	66.250	ENSCAPG00000009132	SMNDC1	100	77.114	Cavia_aperea
ENSSFOG00015008311	smndc1	100	80.252	ENSCPOG00000031666	SMNDC1	100	80.252	Cavia_porcellus
ENSSFOG00015008311	smndc1	100	79.832	ENSCCAG00000021793	SMNDC1	100	79.832	Cebus_capucinus
ENSSFOG00015008311	smndc1	100	79.412	ENSCATG00000035910	SMNDC1	100	79.412	Cercocebus_atys
ENSSFOG00015008311	smndc1	100	80.252	ENSCLAG00000002838	SMNDC1	100	80.252	Chinchilla_lanigera
ENSSFOG00015008311	smndc1	100	79.832	ENSCSAG00000005169	SMNDC1	100	79.832	Chlorocebus_sabaeus
ENSSFOG00015008311	smndc1	81	75.648	ENSCHOG00000002936	SMNDC1	100	75.648	Choloepus_hoffmanni
ENSSFOG00015008311	smndc1	100	81.092	ENSCPBG00000012837	SMNDC1	100	81.092	Chrysemys_picta_bellii
ENSSFOG00015008311	smndc1	100	79.832	ENSCANG00000031720	-	100	79.832	Colobus_angolensis_palliatus
ENSSFOG00015008311	smndc1	100	62.447	ENSCANG00000036994	-	100	62.447	Colobus_angolensis_palliatus
ENSSFOG00015008311	smndc1	100	73.109	ENSCANG00000034620	-	100	73.109	Colobus_angolensis_palliatus
ENSSFOG00015008311	smndc1	100	79.832	ENSCGRG00001012973	Smndc1	100	79.832	Cricetulus_griseus_chok1gshd
ENSSFOG00015008311	smndc1	100	79.832	ENSCGRG00000012396	Smndc1	100	79.832	Cricetulus_griseus_crigri
ENSSFOG00015008311	smndc1	100	78.481	ENSCSEG00000015621	smndc1	100	78.481	Cynoglossus_semilaevis
ENSSFOG00015008311	smndc1	100	80.252	ENSCVAG00000020432	smndc1	100	80.252	Cyprinodon_variegatus
ENSSFOG00015008311	smndc1	100	79.325	ENSDARG00000056235	smndc1	100	79.325	Danio_rerio
ENSSFOG00015008311	smndc1	100	79.832	ENSDNOG00000016387	SMNDC1	83	79.832	Dasypus_novemcinctus
ENSSFOG00015008311	smndc1	100	79.832	ENSDORG00000023715	Smndc1	100	79.832	Dipodomys_ordii
ENSSFOG00015008311	smndc1	97	40.945	FBgn0039977	CG17454	98	42.520	Drosophila_melanogaster
ENSSFOG00015008311	smndc1	100	68.880	ENSEBUG00000010929	smndc1	100	68.880	Eptatretus_burgeri
ENSSFOG00015008311	smndc1	100	79.832	ENSEASG00005014930	SMNDC1	100	79.832	Equus_asinus_asinus
ENSSFOG00015008311	smndc1	100	79.832	ENSECAG00000029973	SMNDC1	100	79.832	Equus_caballus
ENSSFOG00015008311	smndc1	60	87.500	ENSEEUG00000013407	-	72	87.500	Erinaceus_europaeus
ENSSFOG00015008311	smndc1	100	82.278	ENSELUG00000000227	smndc1	100	82.278	Esox_lucius
ENSSFOG00015008311	smndc1	100	79.832	ENSFCAG00000027353	SMNDC1	100	79.832	Felis_catus
ENSSFOG00015008311	smndc1	100	79.832	ENSFALG00000002306	SMNDC1	100	79.832	Ficedula_albicollis
ENSSFOG00015008311	smndc1	100	80.672	ENSFDAG00000006468	SMNDC1	100	80.672	Fukomys_damarensis
ENSSFOG00015008311	smndc1	100	81.513	ENSFHEG00000020150	smndc1	100	81.513	Fundulus_heteroclitus
ENSSFOG00015008311	smndc1	100	81.013	ENSGMOG00000016585	smndc1	100	81.013	Gadus_morhua
ENSSFOG00015008311	smndc1	100	79.832	ENSGALG00000008561	SMNDC1	100	79.832	Gallus_gallus
ENSSFOG00015008311	smndc1	100	79.832	ENSGAFG00000011582	smndc1	100	79.832	Gambusia_affinis
ENSSFOG00015008311	smndc1	100	80.252	ENSGACG00000009468	smndc1	100	80.252	Gasterosteus_aculeatus
ENSSFOG00015008311	smndc1	100	81.092	ENSGAGG00000024547	SMNDC1	100	81.092	Gopherus_agassizii
ENSSFOG00015008311	smndc1	100	79.832	ENSGGOG00000010071	SMNDC1	100	79.832	Gorilla_gorilla
ENSSFOG00015008311	smndc1	100	78.992	ENSHBUG00000017596	smndc1	100	78.992	Haplochromis_burtoni
ENSSFOG00015008311	smndc1	100	80.672	ENSHGLG00000013390	-	100	80.672	Heterocephalus_glaber_female
ENSSFOG00015008311	smndc1	100	58.436	ENSHGLG00000001157	-	100	58.025	Heterocephalus_glaber_female
ENSSFOG00015008311	smndc1	100	64.344	ENSHGLG00100004278	-	100	63.306	Heterocephalus_glaber_male
ENSSFOG00015008311	smndc1	100	80.672	ENSHGLG00100004814	-	100	80.672	Heterocephalus_glaber_male
ENSSFOG00015008311	smndc1	100	78.243	ENSHCOG00000000783	smndc1	100	78.243	Hippocampus_comes
ENSSFOG00015008311	smndc1	100	80.169	ENSIPUG00000004217	smndc1	100	80.169	Ictalurus_punctatus
ENSSFOG00015008311	smndc1	100	80.252	ENSSTOG00000006088	SMNDC1	100	80.252	Ictidomys_tridecemlineatus
ENSSFOG00015008311	smndc1	100	80.252	ENSJJAG00000019974	Smndc1	100	80.252	Jaculus_jaculus
ENSSFOG00015008311	smndc1	100	78.992	ENSKMAG00000020134	smndc1	100	78.992	Kryptolebias_marmoratus
ENSSFOG00015008311	smndc1	100	76.793	ENSLBEG00000004598	smndc1	100	76.793	Labrus_bergylta
ENSSFOG00015008311	smndc1	100	82.353	ENSLACG00000007784	SMNDC1	100	82.353	Latimeria_chalumnae
ENSSFOG00015008311	smndc1	100	90.295	ENSLOCG00000012355	smndc1	100	90.295	Lepisosteus_oculatus
ENSSFOG00015008311	smndc1	100	79.412	ENSLAFG00000014353	SMNDC1	100	79.412	Loxodonta_africana
ENSSFOG00015008311	smndc1	100	79.832	ENSMFAG00000002433	-	100	79.832	Macaca_fascicularis
ENSSFOG00015008311	smndc1	100	65.823	ENSMFAG00000038381	-	100	65.823	Macaca_fascicularis
ENSSFOG00015008311	smndc1	100	79.832	ENSMMUG00000007775	SMNDC1	100	79.832	Macaca_mulatta
ENSSFOG00015008311	smndc1	100	65.823	ENSMMUG00000045875	-	100	65.823	Macaca_mulatta
ENSSFOG00015008311	smndc1	100	70.168	ENSMNEG00000033853	-	100	70.168	Macaca_nemestrina
ENSSFOG00015008311	smndc1	100	79.832	ENSMNEG00000042963	-	100	79.832	Macaca_nemestrina
ENSSFOG00015008311	smndc1	100	76.569	ENSMLEG00000040236	SMNDC1	100	74.790	Mandrillus_leucophaeus
ENSSFOG00015008311	smndc1	89	77.465	ENSMAMG00000018233	smndc1	87	77.465	Mastacembelus_armatus
ENSSFOG00015008311	smndc1	100	78.992	ENSMZEG00005027510	smndc1	100	78.992	Maylandia_zebra
ENSSFOG00015008311	smndc1	97	73.043	ENSMGAG00000010777	SMNDC1	97	73.043	Meleagris_gallopavo
ENSSFOG00015008311	smndc1	100	79.832	ENSMAUG00000012243	-	100	79.832	Mesocricetus_auratus
ENSSFOG00015008311	smndc1	99	65.678	ENSMAUG00000005459	-	93	66.109	Mesocricetus_auratus
ENSSFOG00015008311	smndc1	100	70.042	ENSMICG00000031640	-	100	70.042	Microcebus_murinus
ENSSFOG00015008311	smndc1	100	79.832	ENSMICG00000027336	-	100	79.832	Microcebus_murinus
ENSSFOG00015008311	smndc1	100	79.412	ENSMOCG00000002458	Smndc1	100	79.412	Microtus_ochrogaster
ENSSFOG00015008311	smndc1	100	78.992	ENSMMOG00000008856	smndc1	100	78.992	Mola_mola
ENSSFOG00015008311	smndc1	100	80.672	ENSMODG00000010542	SMNDC1	100	80.672	Monodelphis_domestica
ENSSFOG00015008311	smndc1	100	79.832	ENSMALG00000017598	smndc1	100	79.832	Monopterus_albus
ENSSFOG00015008311	smndc1	100	80.252	MGP_CAROLIEiJ_G0023072	Smndc1	100	80.252	Mus_caroli
ENSSFOG00015008311	smndc1	100	79.832	ENSMUSG00000025024	Smndc1	100	79.832	Mus_musculus
ENSSFOG00015008311	smndc1	100	80.252	MGP_PahariEiJ_G0014560	Smndc1	100	80.252	Mus_pahari
ENSSFOG00015008311	smndc1	100	79.832	MGP_SPRETEiJ_G0023993	Smndc1	100	79.832	Mus_spretus
ENSSFOG00015008311	smndc1	100	79.832	ENSMPUG00000002089	SMNDC1	100	79.832	Mustela_putorius_furo
ENSSFOG00015008311	smndc1	100	79.832	ENSMLUG00000016007	SMNDC1	100	79.832	Myotis_lucifugus
ENSSFOG00015008311	smndc1	100	79.412	ENSNGAG00000006833	Smndc1	100	79.412	Nannospalax_galili
ENSSFOG00015008311	smndc1	100	78.992	ENSNBRG00000017089	smndc1	100	78.992	Neolamprologus_brichardi
ENSSFOG00015008311	smndc1	100	79.832	ENSNLEG00000015471	SMNDC1	100	79.832	Nomascus_leucogenys
ENSSFOG00015008311	smndc1	70	60.843	ENSMEUG00000010120	-	99	56.281	Notamacropus_eugenii
ENSSFOG00015008311	smndc1	100	80.252	ENSOPRG00000015348	SMNDC1	100	80.252	Ochotona_princeps
ENSSFOG00015008311	smndc1	100	58.228	ENSODEG00000007594	-	100	56.962	Octodon_degus
ENSSFOG00015008311	smndc1	100	78.992	ENSONIG00000000434	smndc1	100	78.992	Oreochromis_niloticus
ENSSFOG00015008311	smndc1	100	81.513	ENSOANG00000001598	SMNDC1	100	81.513	Ornithorhynchus_anatinus
ENSSFOG00015008311	smndc1	100	59.916	ENSOCUG00000012274	-	100	62.025	Oryctolagus_cuniculus
ENSSFOG00015008311	smndc1	100	79.832	ENSOCUG00000008145	-	100	79.832	Oryctolagus_cuniculus
ENSSFOG00015008311	smndc1	100	78.151	ENSORLG00000005934	smndc1	95	78.151	Oryzias_latipes
ENSSFOG00015008311	smndc1	100	78.151	ENSORLG00020008796	smndc1	95	78.151	Oryzias_latipes_hni
ENSSFOG00015008311	smndc1	100	78.151	ENSORLG00015013666	smndc1	100	78.151	Oryzias_latipes_hsok
ENSSFOG00015008311	smndc1	100	78.059	ENSOMEG00000007590	smndc1	100	78.059	Oryzias_melastigma
ENSSFOG00015008311	smndc1	100	79.412	ENSOGAG00000000571	SMNDC1	100	79.412	Otolemur_garnettii
ENSSFOG00015008311	smndc1	100	79.412	ENSOARG00000009500	SMNDC1	100	79.412	Ovis_aries
ENSSFOG00015008311	smndc1	100	79.832	ENSPPAG00000027815	SMNDC1	100	79.832	Pan_paniscus
ENSSFOG00015008311	smndc1	100	79.832	ENSPPRG00000013749	SMNDC1	100	79.832	Panthera_pardus
ENSSFOG00015008311	smndc1	100	79.832	ENSPTIG00000011451	SMNDC1	100	79.832	Panthera_tigris_altaica
ENSSFOG00015008311	smndc1	100	79.832	ENSPTRG00000002937	SMNDC1	100	79.832	Pan_troglodytes
ENSSFOG00015008311	smndc1	100	75.949	ENSPANG00000031346	-	100	75.949	Papio_anubis
ENSSFOG00015008311	smndc1	100	79.832	ENSPANG00000020805	-	100	79.832	Papio_anubis
ENSSFOG00015008311	smndc1	100	91.983	ENSPKIG00000017164	smndc1	100	91.983	Paramormyrops_kingsleyae
ENSSFOG00015008311	smndc1	100	81.513	ENSPSIG00000012257	SMNDC1	100	81.513	Pelodiscus_sinensis
ENSSFOG00015008311	smndc1	100	77.215	ENSPMGG00000015651	smndc1	100	77.215	Periophthalmus_magnuspinnatus
ENSSFOG00015008311	smndc1	100	79.832	ENSPEMG00000022058	Smndc1	100	79.832	Peromyscus_maniculatus_bairdii
ENSSFOG00015008311	smndc1	100	66.393	ENSPMAG00000007705	smndc1	100	66.393	Petromyzon_marinus
ENSSFOG00015008311	smndc1	97	58.952	ENSPCIG00000009693	-	100	58.952	Phascolarctos_cinereus
ENSSFOG00015008311	smndc1	100	80.672	ENSPCIG00000018419	SMNDC1	100	80.672	Phascolarctos_cinereus
ENSSFOG00015008311	smndc1	100	80.252	ENSPFOG00000017113	smndc1	100	80.252	Poecilia_formosa
ENSSFOG00015008311	smndc1	100	80.252	ENSPLAG00000010372	smndc1	100	80.252	Poecilia_latipinna
ENSSFOG00015008311	smndc1	100	80.672	ENSPMEG00000012288	smndc1	100	80.672	Poecilia_mexicana
ENSSFOG00015008311	smndc1	100	80.252	ENSPREG00000012279	smndc1	100	80.252	Poecilia_reticulata
ENSSFOG00015008311	smndc1	100	79.832	ENSPPYG00000002643	SMNDC1	100	79.832	Pongo_abelii
ENSSFOG00015008311	smndc1	81	75.130	ENSPCAG00000016183	SMNDC1	100	75.130	Procavia_capensis
ENSSFOG00015008311	smndc1	100	79.412	ENSPCOG00000024343	SMNDC1	100	79.412	Propithecus_coquereli
ENSSFOG00015008311	smndc1	77	90.625	ENSPVAG00000004368	SMNDC1	77	90.625	Pteropus_vampyrus
ENSSFOG00015008311	smndc1	83	77.778	ENSPNYG00000024093	smndc1	86	77.778	Pundamilia_nyererei
ENSSFOG00015008311	smndc1	100	79.325	ENSPNAG00000025285	smndc1	100	79.325	Pygocentrus_nattereri
ENSSFOG00015008311	smndc1	100	80.252	ENSRNOG00000014833	Smndc1	100	80.252	Rattus_norvegicus
ENSSFOG00015008311	smndc1	100	64.979	ENSRBIG00000032452	-	100	64.979	Rhinopithecus_bieti
ENSSFOG00015008311	smndc1	100	79.412	ENSRBIG00000000224	-	100	79.412	Rhinopithecus_bieti
ENSSFOG00015008311	smndc1	100	65.401	ENSRROG00000039125	-	100	65.401	Rhinopithecus_roxellana
ENSSFOG00015008311	smndc1	100	79.832	ENSRROG00000044992	-	100	79.832	Rhinopithecus_roxellana
ENSSFOG00015008311	smndc1	100	79.832	ENSSBOG00000026789	SMNDC1	100	79.832	Saimiri_boliviensis_boliviensis
ENSSFOG00015008311	smndc1	100	80.672	ENSSHAG00000015189	SMNDC1	100	80.672	Sarcophilus_harrisii
ENSSFOG00015008311	smndc1	100	78.992	ENSSMAG00000020118	smndc1	100	78.992	Scophthalmus_maximus
ENSSFOG00015008311	smndc1	100	80.252	ENSSDUG00000015330	smndc1	100	80.252	Seriola_dumerili
ENSSFOG00015008311	smndc1	100	80.252	ENSSLDG00000017325	smndc1	100	80.252	Seriola_lalandi_dorsalis
ENSSFOG00015008311	smndc1	100	80.252	ENSSARG00000006063	SMNDC1	100	80.252	Sorex_araneus
ENSSFOG00015008311	smndc1	100	80.252	ENSSPUG00000004574	SMNDC1	100	80.252	Sphenodon_punctatus
ENSSFOG00015008311	smndc1	100	77.731	ENSSPAG00000000338	smndc1	100	77.731	Stegastes_partitus
ENSSFOG00015008311	smndc1	100	79.832	ENSSSCG00000030507	SMNDC1	100	79.832	Sus_scrofa
ENSSFOG00015008311	smndc1	100	79.832	ENSTGUG00000010599	SMNDC1	100	79.832	Taeniopygia_guttata
ENSSFOG00015008311	smndc1	100	76.891	ENSTRUG00000023281	smndc1	100	76.891	Takifugu_rubripes
ENSSFOG00015008311	smndc1	100	76.891	ENSTNIG00000013331	smndc1	100	76.891	Tetraodon_nigroviridis
ENSSFOG00015008311	smndc1	100	80.252	ENSTBEG00000014337	SMNDC1	100	80.252	Tupaia_belangeri
ENSSFOG00015008311	smndc1	100	79.832	ENSUAMG00000008142	SMNDC1	100	79.832	Ursus_americanus
ENSSFOG00015008311	smndc1	100	79.832	ENSUMAG00000023722	SMNDC1	100	79.832	Ursus_maritimus
ENSSFOG00015008311	smndc1	83	79.798	ENSVPAG00000003402	SMNDC1	100	79.798	Vicugna_pacos
ENSSFOG00015008311	smndc1	100	79.832	ENSVVUG00000007820	SMNDC1	100	79.832	Vulpes_vulpes
ENSSFOG00015008311	smndc1	57	67.164	ENSXETG00000015415	SMNDC1	94	67.164	Xenopus_tropicalis
ENSSFOG00015008311	smndc1	100	78.059	ENSXCOG00000009159	smndc1	100	78.059	Xiphophorus_couchianus
ENSSFOG00015008311	smndc1	100	79.412	ENSXMAG00000012755	smndc1	100	79.412	Xiphophorus_maculatus