EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015008377 (Gene tree)
Gene ID: 108919462
Gene Symbol: srsf5
Alias: fb49e01|im:6906390|sfrs5|sfrs5a|wu:fb49e01|wu:fj09b12
Full Name: serine and arginine rich splicing factor 5
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 8052 bases
Position: chrKV411272.1:1066974-1075025
Accession: 108919462
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015012973	RRM_5	PF13893.6	2.7e-07	1	1
ENSSFOP00015012973	RRM_1	PF00076.22	6.1e-34	1	2
ENSSFOP00015012973	RRM_1	PF00076.22	6.1e-34	2	2
ENSSFOP00015012973	RRM_3	PF08777.11	1.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015013137	-	3554	XM_018727450	ENSSFOP00015012973	282 (aa)	XP_018582966	A0A0P7WU03

Gene Model

Click here to download ENSSFOG00015008377's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03040	Spliceosome	KEGG
sfm05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015008377's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015008377	srsf5	70	39.904	ENSSFOG00015004989	-	60	44.693
ENSSFOG00015008377	srsf5	65	61.828	ENSSFOG00015020292	srsf4	63	77.612
ENSSFOG00015008377	srsf5	66	39.899	ENSSFOG00015002476	SRSF9	67	39.785
ENSSFOG00015008377	srsf5	61	44.134	ENSSFOG00015004800	srsf1a	66	44.693
ENSSFOG00015008377	srsf5	62	38.674	ENSSFOG00015017303	srsf9	67	39.247
ENSSFOG00015008377	srsf5	65	58.291	ENSSFOG00015019681	-	56	59.024
ENSSFOG00015008377	srsf5	65	63.736	ENSSFOG00015015169	SRSF6	58	64.674

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015008377	srsf5	86	75.720	ENSAPOG00000017395	srsf5a	62	87.634	Acanthochromis_polyacanthus
ENSSFOG00015008377	srsf5	91	66.160	ENSACIG00000011892	srsf5a	96	82.836	Amphilophus_citrinellus
ENSSFOG00015008377	srsf5	66	87.634	ENSAOCG00000014967	srsf5a	79	81.070	Amphiprion_ocellaris
ENSSFOG00015008377	srsf5	66	87.634	ENSAPEG00000009297	srsf5a	79	81.070	Amphiprion_percula
ENSSFOG00015008377	srsf5	95	72.694	ENSATEG00000000198	srsf5a	90	78.777	Anabas_testudineus
ENSSFOG00015008377	srsf5	66	77.128	ENSAPLG00000002469	-	70	77.660	Anas_platyrhynchos
ENSSFOG00015008377	srsf5	66	77.419	ENSACAG00000029015	-	68	77.419	Anolis_carolinensis
ENSSFOG00015008377	srsf5	66	82.723	ENSACLG00000027166	srsf5a	65	81.313	Astatotilapia_calliptera
ENSSFOG00015008377	srsf5	66	92.473	ENSAMXG00000030476	srsf5a	89	84.898	Astyanax_mexicanus
ENSSFOG00015008377	srsf5	66	81.283	ENSCPBG00000021518	-	70	80.749	Chrysemys_picta_bellii
ENSSFOG00015008377	srsf5	66	55.102	ENSCSAVG00000011376	-	78	56.853	Ciona_savignyi
ENSSFOG00015008377	srsf5	86	74.400	ENSCSEG00000008109	srsf5a	62	81.000	Cynoglossus_semilaevis
ENSSFOG00015008377	srsf5	65	76.596	ENSCVAG00000016982	srsf5a	96	75.188	Cyprinodon_variegatus
ENSSFOG00015008377	srsf5	99	79.359	ENSDARG00000029818	srsf5a	100	84.444	Danio_rerio
ENSSFOG00015008377	srsf5	66	85.492	ENSELUG00000020439	srsf5a	62	88.601	Esox_lucius
ENSSFOG00015008377	srsf5	66	77.957	ENSFALG00000005098	-	64	79.032	Ficedula_albicollis
ENSSFOG00015008377	srsf5	66	74.000	ENSFHEG00000003955	srsf5a	97	70.345	Fundulus_heteroclitus
ENSSFOG00015008377	srsf5	66	87.097	ENSGMOG00000000869	srsf5a	94	84.946	Gadus_morhua
ENSSFOG00015008377	srsf5	66	79.032	ENSGALG00000033259	SRSF5A	63	78.495	Gallus_gallus
ENSSFOG00015008377	srsf5	66	73.118	ENSGAFG00000018237	srsf5a	73	71.255	Gambusia_affinis
ENSSFOG00015008377	srsf5	66	86.022	ENSGACG00000011761	srsf5a	70	86.022	Gasterosteus_aculeatus
ENSSFOG00015008377	srsf5	66	81.283	ENSGAGG00000007312	-	70	80.749	Gopherus_agassizii
ENSSFOG00015008377	srsf5	66	84.211	ENSHBUG00000014048	srsf5a	64	81.726	Haplochromis_burtoni
ENSSFOG00015008377	srsf5	66	88.172	ENSHCOG00000017557	srsf5a	62	88.172	Hippocampus_comes
ENSSFOG00015008377	srsf5	66	91.053	ENSIPUG00000003439	srsf5a	69	90.526	Ictalurus_punctatus
ENSSFOG00015008377	srsf5	66	80.851	ENSKMAG00000014937	srsf5a	58	81.675	Kryptolebias_marmoratus
ENSSFOG00015008377	srsf5	66	81.538	ENSLBEG00000017153	srsf5a	74	79.703	Labrus_bergylta
ENSSFOG00015008377	srsf5	66	81.720	ENSLACG00000017874	-	70	84.409	Latimeria_chalumnae
ENSSFOG00015008377	srsf5	66	91.935	ENSLOCG00000014075	srsf5a	82	86.345	Lepisosteus_oculatus
ENSSFOG00015008377	srsf5	66	88.710	ENSMAMG00000000192	srsf5a	65	86.702	Mastacembelus_armatus
ENSSFOG00015008377	srsf5	66	84.211	ENSMZEG00005010485	srsf5a	64	81.726	Maylandia_zebra
ENSSFOG00015008377	srsf5	70	76.382	ENSMGAG00000011888	-	96	77.381	Meleagris_gallopavo
ENSSFOG00015008377	srsf5	66	86.022	ENSMMOG00000009793	srsf5a	61	86.631	Mola_mola
ENSSFOG00015008377	srsf5	66	81.818	ENSMALG00000021194	srsf5a	95	58.131	Monopterus_albus
ENSSFOG00015008377	srsf5	66	84.656	ENSNBRG00000000771	srsf5a	64	82.143	Neolamprologus_brichardi
ENSSFOG00015008377	srsf5	66	84.656	ENSONIG00000019583	srsf5a	64	82.143	Oreochromis_niloticus
ENSSFOG00015008377	srsf5	86	78.049	ENSORLG00000009268	srsf5a	67	85.027	Oryzias_latipes
ENSSFOG00015008377	srsf5	86	78.049	ENSORLG00020003281	srsf5	67	85.027	Oryzias_latipes_hni
ENSSFOG00015008377	srsf5	86	78.049	ENSORLG00015023075	srsf5	67	85.027	Oryzias_latipes_hsok
ENSSFOG00015008377	srsf5	86	77.778	ENSOMEG00000000628	srsf5a	66	86.559	Oryzias_melastigma
ENSSFOG00015008377	srsf5	66	93.548	ENSPKIG00000002054	srsf5a	68	93.548	Paramormyrops_kingsleyae
ENSSFOG00015008377	srsf5	66	80.749	ENSPSIG00000008238	-	69	78.610	Pelodiscus_sinensis
ENSSFOG00015008377	srsf5	67	78.421	ENSPMGG00000020125	srsf5a	55	78.723	Periophthalmus_magnuspinnatus
ENSSFOG00015008377	srsf5	66	80.105	ENSPFOG00000022993	srsf5a	78	75.581	Poecilia_formosa
ENSSFOG00015008377	srsf5	66	80.000	ENSPLAG00000005508	srsf5a	78	75.486	Poecilia_latipinna
ENSSFOG00015008377	srsf5	66	80.105	ENSPMEG00000016339	srsf5a	78	75.969	Poecilia_mexicana
ENSSFOG00015008377	srsf5	66	79.167	ENSPREG00000018091	srsf5a	79	75.676	Poecilia_reticulata
ENSSFOG00015008377	srsf5	66	84.211	ENSPNYG00000021245	srsf5a	64	81.726	Pundamilia_nyererei
ENSSFOG00015008377	srsf5	66	91.398	ENSPNAG00000021333	srsf5a	86	85.124	Pygocentrus_nattereri
ENSSFOG00015008377	srsf5	66	80.500	ENSSMAG00000010899	srsf5a	66	82.500	Scophthalmus_maximus
ENSSFOG00015008377	srsf5	88	70.800	ENSSDUG00000006103	srsf5a	80	79.839	Seriola_dumerili
ENSSFOG00015008377	srsf5	88	70.800	ENSSLDG00000004146	srsf5a	80	79.839	Seriola_lalandi_dorsalis
ENSSFOG00015008377	srsf5	66	74.731	ENSSPUG00000002052	-	68	74.731	Sphenodon_punctatus
ENSSFOG00015008377	srsf5	86	73.663	ENSSPAG00000002821	srsf5a	79	81.070	Stegastes_partitus
ENSSFOG00015008377	srsf5	66	78.495	ENSTGUG00000011492	-	68	79.032	Taeniopygia_guttata
ENSSFOG00015008377	srsf5	66	81.771	ENSTRUG00000022908	srsf5a	65	79.397	Takifugu_rubripes
ENSSFOG00015008377	srsf5	66	82.540	ENSXETG00000017937	srsf5a	72	83.069	Xenopus_tropicalis
ENSSFOG00015008377	srsf5	66	78.610	ENSXCOG00000015338	srsf5a	61	77.202	Xiphophorus_couchianus
ENSSFOG00015008377	srsf5	66	78.756	ENSXMAG00000012823	srsf5a	79	74.615	Xiphophorus_maculatus