EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015008583 (Gene tree)
Gene ID: 108937122
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 6666 bases
Position: chrKV411140.1:3170354-3177019
Accession: 108937122
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015013319	RRM_1	PF00076.22	1.4e-64	1	4
ENSSFOP00015013319	RRM_1	PF00076.22	1.4e-64	2	4
ENSSFOP00015013319	RRM_1	PF00076.22	1.4e-64	3	4
ENSSFOP00015013319	RRM_1	PF00076.22	1.4e-64	4	4
ENSSFOP00015013311	RRM_1	PF00076.22	1.7e-64	1	4
ENSSFOP00015013311	RRM_1	PF00076.22	1.7e-64	2	4
ENSSFOP00015013311	RRM_1	PF00076.22	1.7e-64	3	4
ENSSFOP00015013311	RRM_1	PF00076.22	1.7e-64	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015013477	-	3048	XM_018756868	ENSSFOP00015013311	666 (aa)	XP_018612384	A0A1W5A956
ENSSFOT00015013485	-	2976	-	ENSSFOP00015013319	642 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015008583's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015008583's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015008583	ncl	54	31.034	ENSSFOG00015006662	pabpc1a	58	31.034
ENSSFOG00015008583	ncl	54	31.034	ENSSFOG00015002752	-	58	31.034
ENSSFOG00015008583	ncl	52	45.748	ENSSFOG00015013153	-	78	47.573

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015008583	ncl	58	80.749	ENSAPOG00000023888	ncl	68	74.222	Acanthochromis_polyacanthus
ENSSFOG00015008583	ncl	81	38.989	ENSAPOG00000014534	-	67	43.939	Acanthochromis_polyacanthus
ENSSFOG00015008583	ncl	75	73.797	ENSACIG00000013234	ncl	62	73.670	Amphilophus_citrinellus
ENSSFOG00015008583	ncl	58	81.016	ENSAOCG00000003133	ncl	63	74.058	Amphiprion_ocellaris
ENSSFOG00015008583	ncl	78	38.520	ENSAOCG00000014792	-	61	43.188	Amphiprion_ocellaris
ENSSFOG00015008583	ncl	78	38.710	ENSAPEG00000013612	-	61	43.445	Amphiprion_percula
ENSSFOG00015008583	ncl	58	81.016	ENSAPEG00000002769	ncl	63	74.058	Amphiprion_percula
ENSSFOG00015008583	ncl	66	46.325	ENSATEG00000019862	-	80	48.346	Anabas_testudineus
ENSSFOG00015008583	ncl	58	62.334	ENSAPLG00000012897	-	63	63.660	Anas_platyrhynchos
ENSSFOG00015008583	ncl	58	64.935	ENSACAG00000001006	-	52	64.508	Anolis_carolinensis
ENSSFOG00015008583	ncl	57	71.613	ENSACLG00000026031	ncl	85	72.168	Astatotilapia_calliptera
ENSSFOG00015008583	ncl	56	45.205	ENSCHIG00000012665	-	53	45.833	Capra_hircus
ENSSFOG00015008583	ncl	50	51.528	ENSCHIG00000003401	-	52	51.515	Capra_hircus
ENSSFOG00015008583	ncl	72	57.294	ENSCPBG00000016444	-	56	65.885	Chrysemys_picta_bellii
ENSSFOG00015008583	ncl	60	77.011	ENSCSEG00000015089	ncl	70	68.455	Cynoglossus_semilaevis
ENSSFOG00015008583	ncl	58	76.550	ENSCVAG00000012600	ncl	64	71.041	Cyprinodon_variegatus
ENSSFOG00015008583	ncl	57	78.387	ENSDARG00000002710	ncl	83	77.707	Danio_rerio
ENSSFOG00015008583	ncl	57	46.543	ENSDNOG00000031611	-	67	46.316	Dasypus_novemcinctus
ENSSFOG00015008583	ncl	78	47.903	ENSEBUG00000016173	ncl	50	48.969	Eptatretus_burgeri
ENSSFOG00015008583	ncl	66	48.526	ENSELUG00000022826	-	81	53.723	Esox_lucius
ENSSFOG00015008583	ncl	68	77.574	ENSELUG00000006033	ncl	67	72.667	Esox_lucius
ENSSFOG00015008583	ncl	59	61.818	ENSFALG00000007592	-	58	60.000	Ficedula_albicollis
ENSSFOG00015008583	ncl	75	75.401	ENSFHEG00000018000	ncl	72	69.952	Fundulus_heteroclitus
ENSSFOG00015008583	ncl	59	63.281	ENSGALG00000032930	NCL	56	63.542	Gallus_gallus
ENSSFOG00015008583	ncl	76	77.005	ENSGAFG00000015375	ncl	61	70.222	Gambusia_affinis
ENSSFOG00015008583	ncl	94	62.696	ENSGACG00000008970	ncl	57	70.951	Gasterosteus_aculeatus
ENSSFOG00015008583	ncl	94	53.555	ENSGAGG00000013330	-	56	65.274	Gopherus_agassizii
ENSSFOG00015008583	ncl	56	74.531	ENSHBUG00000006869	ncl	64	68.527	Haplochromis_burtoni
ENSSFOG00015008583	ncl	58	77.807	ENSHCOG00000010234	ncl	53	77.660	Hippocampus_comes
ENSSFOG00015008583	ncl	56	73.502	ENSIPUG00000024556	ncl	79	76.452	Ictalurus_punctatus
ENSSFOG00015008583	ncl	63	43.437	ENSLBEG00000007915	-	66	44.246	Labrus_bergylta
ENSSFOG00015008583	ncl	56	43.272	ENSLBEG00000014278	-	82	43.478	Labrus_bergylta
ENSSFOG00015008583	ncl	68	77.880	ENSLBEG00000019073	ncl	68	71.806	Labrus_bergylta
ENSSFOG00015008583	ncl	60	54.847	ENSLACG00000022167	-	79	55.733	Latimeria_chalumnae
ENSSFOG00015008583	ncl	73	62.839	ENSLACG00000009328	ncl	56	68.338	Latimeria_chalumnae
ENSSFOG00015008583	ncl	56	71.508	ENSLOCG00000004828	ncl	51	70.899	Lepisosteus_oculatus
ENSSFOG00015008583	ncl	73	38.956	ENSMAMG00000003479	-	70	41.837	Mastacembelus_armatus
ENSSFOG00015008583	ncl	73	74.678	ENSMAMG00000002086	ncl	55	72.907	Mastacembelus_armatus
ENSSFOG00015008583	ncl	58	74.531	ENSMZEG00005017438	ncl	72	68.527	Maylandia_zebra
ENSSFOG00015008583	ncl	57	62.772	ENSMGAG00000008147	-	90	62.432	Meleagris_gallopavo
ENSSFOG00015008583	ncl	57	79.153	ENSMMOG00000008553	ncl	88	77.879	Mola_mola
ENSSFOG00015008583	ncl	57	60.156	ENSMODG00000002470	-	59	56.840	Monodelphis_domestica
ENSSFOG00015008583	ncl	96	64.352	ENSMALG00000014827	ncl	55	32.727	Monopterus_albus
ENSSFOG00015008583	ncl	57	74.205	ENSNBRG00000000146	-	86	74.035	Neolamprologus_brichardi
ENSSFOG00015008583	ncl	55	74.205	ENSNBRG00000001232	ncl	100	66.201	Neolamprologus_brichardi
ENSSFOG00015008583	ncl	58	41.425	ENSONIG00000010631	-	96	41.711	Oreochromis_niloticus
ENSSFOG00015008583	ncl	56	74.531	ENSONIG00000012508	ncl	63	68.527	Oreochromis_niloticus
ENSSFOG00015008583	ncl	61	59.242	ENSOANG00000008732	-	61	61.598	Ornithorhynchus_anatinus
ENSSFOG00015008583	ncl	56	77.159	ENSORLG00000007055	ncl	74	71.882	Oryzias_latipes
ENSSFOG00015008583	ncl	59	39.141	ENSORLG00000004645	-	83	40.153	Oryzias_latipes
ENSSFOG00015008583	ncl	59	40.250	ENSORLG00020003497	-	75	40.409	Oryzias_latipes_hni
ENSSFOG00015008583	ncl	69	69.663	ENSORLG00015013815	ncl	98	75.843	Oryzias_latipes_hsok
ENSSFOG00015008583	ncl	59	39.152	ENSORLG00015006613	-	79	40.306	Oryzias_latipes_hsok
ENSSFOG00015008583	ncl	61	39.320	ENSOMEG00000015864	-	83	39.949	Oryzias_melastigma
ENSSFOG00015008583	ncl	67	82.679	ENSPKIG00000002604	ncl	64	78.146	Paramormyrops_kingsleyae
ENSSFOG00015008583	ncl	58	64.583	ENSPSIG00000002361	-	54	64.583	Pelodiscus_sinensis
ENSSFOG00015008583	ncl	66	74.057	ENSPMGG00000004709	ncl	83	76.433	Periophthalmus_magnuspinnatus
ENSSFOG00015008583	ncl	68	66.737	ENSPFOG00000024205	ncl	60	71.300	Poecilia_formosa
ENSSFOG00015008583	ncl	68	66.239	ENSPLAG00000024026	ncl	61	71.461	Poecilia_latipinna
ENSSFOG00015008583	ncl	58	76.471	ENSPMEG00000006000	ncl	60	71.300	Poecilia_mexicana
ENSSFOG00015008583	ncl	58	74.531	ENSPNYG00000020494	ncl	72	68.680	Pundamilia_nyererei
ENSSFOG00015008583	ncl	57	55.937	ENSSHAG00000002702	-	59	55.906	Sarcophilus_harrisii
ENSSFOG00015008583	ncl	66	75.644	ENSSMAG00000021241	ncl	65	71.397	Scophthalmus_maximus
ENSSFOG00015008583	ncl	73	40.438	ENSSMAG00000007582	-	61	46.597	Scophthalmus_maximus
ENSSFOG00015008583	ncl	72	78.465	ENSSDUG00000006128	ncl	98	76.636	Seriola_dumerili
ENSSFOG00015008583	ncl	72	41.788	ENSSDUG00000010922	-	87	44.125	Seriola_dumerili
ENSSFOG00015008583	ncl	67	78.505	ENSSLDG00000002012	ncl	64	73.289	Seriola_lalandi_dorsalis
ENSSFOG00015008583	ncl	62	44.550	ENSSLDG00000015784	-	71	43.230	Seriola_lalandi_dorsalis
ENSSFOG00015008583	ncl	81	56.944	ENSSPUG00000008244	-	56	64.141	Sphenodon_punctatus
ENSSFOG00015008583	ncl	56	79.505	ENSSPAG00000002637	ncl	100	70.752	Stegastes_partitus
ENSSFOG00015008583	ncl	60	45.960	ENSSPAG00000001859	-	63	44.473	Stegastes_partitus
ENSSFOG00015008583	ncl	81	60.135	ENSTGUG00000009782	-	71	57.930	Taeniopygia_guttata
ENSSFOG00015008583	ncl	67	72.979	ENSTRUG00000008185	ncl	55	75.806	Takifugu_rubripes
ENSSFOG00015008583	ncl	56	77.437	ENSTNIG00000012186	ncl	78	76.596	Tetraodon_nigroviridis
ENSSFOG00015008583	ncl	58	47.950	ENSXCOG00000003524	ncl	99	60.000	Xiphophorus_couchianus
ENSSFOG00015008583	ncl	59	41.282	ENSXCOG00000007369	-	96	41.885	Xiphophorus_couchianus
ENSSFOG00015008583	ncl	64	70.982	ENSXMAG00000005914	ncl	61	70.982	Xiphophorus_maculatus