EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015008955 (Gene tree)
Gene ID: 108937171
Gene Symbol: lsg1
Alias: fb99b06|wu:fb99b06|zgc:76988
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 9810 bases
Position: chrKV411140.1:3306346-3316155
Accession: 108937171
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015013950	MMR_HSR1	PF01926.23	1.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015014121	-	4023	XM_018756958	ENSSFOP00015013950	637 (aa)	XP_018612474	A0A1W5A9E3

Gene Model

Click here to download ENSSFOG00015008955's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015008955's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015008955	lsg1	68	30.735	ENSSFOG00015013921	gnl1	68	30.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015008955	lsg1	99	62.819	ENSG00000041802	LSG1	90	73.913	Homo_sapiens
ENSSFOG00015008955	lsg1	100	74.415	ENSAPOG00000009694	lsg1	99	74.641	Acanthochromis_polyacanthus
ENSSFOG00015008955	lsg1	100	62.725	ENSAMEG00000009343	LSG1	98	63.359	Ailuropoda_melanoleuca
ENSSFOG00015008955	lsg1	98	73.194	ENSACIG00000012406	lsg1	98	73.194	Amphilophus_citrinellus
ENSSFOG00015008955	lsg1	100	73.676	ENSAOCG00000016066	lsg1	99	74.363	Amphiprion_ocellaris
ENSSFOG00015008955	lsg1	100	73.676	ENSAPEG00000003252	lsg1	99	74.522	Amphiprion_percula
ENSSFOG00015008955	lsg1	98	74.281	ENSATEG00000011794	lsg1	98	74.281	Anabas_testudineus
ENSSFOG00015008955	lsg1	95	62.500	ENSACAG00000004222	LSG1	100	61.965	Anolis_carolinensis
ENSSFOG00015008955	lsg1	99	64.188	ENSANAG00000021153	LSG1	98	64.651	Aotus_nancymaae
ENSSFOG00015008955	lsg1	100	72.657	ENSACLG00000000520	lsg1	98	72.214	Astatotilapia_calliptera
ENSSFOG00015008955	lsg1	100	71.298	ENSAMXG00000008271	lsg1	98	71.919	Astyanax_mexicanus
ENSSFOG00015008955	lsg1	99	64.188	ENSBTAG00000008461	LSG1	98	64.241	Bos_taurus
ENSSFOG00015008955	lsg1	73	50.256	WBGene00016907	C53H9.2	76	54.545	Caenorhabditis_elegans
ENSSFOG00015008955	lsg1	99	63.885	ENSCJAG00000013962	LSG1	98	64.341	Callithrix_jacchus
ENSSFOG00015008955	lsg1	95	64.557	ENSCAFG00000013445	LSG1	100	64.678	Canis_familiaris
ENSSFOG00015008955	lsg1	100	63.418	ENSCAFG00020002216	LSG1	99	64.455	Canis_lupus_dingo
ENSSFOG00015008955	lsg1	100	64.145	ENSCHIG00000015769	LSG1	98	64.561	Capra_hircus
ENSSFOG00015008955	lsg1	99	63.499	ENSTSYG00000001447	LSG1	98	63.932	Carlito_syrichta
ENSSFOG00015008955	lsg1	95	65.410	ENSCAPG00000009856	LSG1	99	65.846	Cavia_aperea
ENSSFOG00015008955	lsg1	99	62.822	ENSCCAG00000035744	LSG1	98	63.256	Cebus_capucinus
ENSSFOG00015008955	lsg1	99	63.733	ENSCATG00000042060	LSG1	98	63.833	Cercocebus_atys
ENSSFOG00015008955	lsg1	99	63.293	ENSCSAG00000008796	LSG1	90	65.015	Chlorocebus_sabaeus
ENSSFOG00015008955	lsg1	100	65.667	ENSCPBG00000015941	LSG1	82	66.667	Chrysemys_picta_bellii
ENSSFOG00015008955	lsg1	84	47.761	ENSCING00000007079	-	97	53.363	Ciona_intestinalis
ENSSFOG00015008955	lsg1	79	54.800	ENSCSAVG00000002514	-	95	55.085	Ciona_savignyi
ENSSFOG00015008955	lsg1	99	64.545	ENSCANG00000030709	LSG1	98	65.533	Colobus_angolensis_palliatus
ENSSFOG00015008955	lsg1	99	64.451	ENSCGRG00001019846	Lsg1	98	65.163	Cricetulus_griseus_chok1gshd
ENSSFOG00015008955	lsg1	99	64.275	ENSCGRG00000014617	Lsg1	98	65.163	Cricetulus_griseus_crigri
ENSSFOG00015008955	lsg1	98	71.340	ENSCSEG00000008522	lsg1	98	72.178	Cynoglossus_semilaevis
ENSSFOG00015008955	lsg1	97	73.591	ENSCVAG00000002484	lsg1	98	73.558	Cyprinodon_variegatus
ENSSFOG00015008955	lsg1	100	74.650	ENSDARG00000015352	lsg1	98	73.927	Danio_rerio
ENSSFOG00015008955	lsg1	99	63.733	ENSDNOG00000006224	LSG1	98	64.031	Dasypus_novemcinctus
ENSSFOG00015008955	lsg1	99	50.000	FBgn0266284	Ns3	98	49.842	Drosophila_melanogaster
ENSSFOG00015008955	lsg1	88	64.474	ENSETEG00000003888	LSG1	87	67.742	Echinops_telfairi
ENSSFOG00015008955	lsg1	88	57.607	ENSEBUG00000003119	lsg1	85	57.094	Eptatretus_burgeri
ENSSFOG00015008955	lsg1	99	64.955	ENSEASG00005000678	LSG1	98	65.639	Equus_asinus_asinus
ENSSFOG00015008955	lsg1	99	64.804	ENSECAG00000017659	LSG1	98	64.861	Equus_caballus
ENSSFOG00015008955	lsg1	86	61.017	ENSEEUG00000015217	LSG1	85	61.017	Erinaceus_europaeus
ENSSFOG00015008955	lsg1	100	70.416	ENSELUG00000023973	lsg1	98	71.406	Esox_lucius
ENSSFOG00015008955	lsg1	100	63.691	ENSFCAG00000024957	LSG1	98	64.000	Felis_catus
ENSSFOG00015008955	lsg1	99	59.789	ENSFALG00000007210	LSG1	99	60.736	Ficedula_albicollis
ENSSFOG00015008955	lsg1	99	63.945	ENSFDAG00000017373	LSG1	98	64.038	Fukomys_damarensis
ENSSFOG00015008955	lsg1	97	72.669	ENSFHEG00000003680	lsg1	98	72.640	Fundulus_heteroclitus
ENSSFOG00015008955	lsg1	98	67.091	ENSGMOG00000015834	lsg1	98	67.143	Gadus_morhua
ENSSFOG00015008955	lsg1	100	59.970	ENSGALG00000007058	LSG1	87	62.557	Gallus_gallus
ENSSFOG00015008955	lsg1	97	71.865	ENSGAFG00000015831	lsg1	98	71.680	Gambusia_affinis
ENSSFOG00015008955	lsg1	98	71.497	ENSGACG00000009323	lsg1	98	71.497	Gasterosteus_aculeatus
ENSSFOG00015008955	lsg1	99	63.433	ENSGGOG00000000520	LSG1	98	65.070	Gorilla_gorilla
ENSSFOG00015008955	lsg1	100	73.717	ENSHBUG00000005659	lsg1	98	73.291	Haplochromis_burtoni
ENSSFOG00015008955	lsg1	99	63.919	ENSHGLG00000017390	LSG1	98	63.551	Heterocephalus_glaber_female
ENSSFOG00015008955	lsg1	99	64.075	ENSHGLG00100018587	LSG1	98	63.707	Heterocephalus_glaber_male
ENSSFOG00015008955	lsg1	97	70.794	ENSHCOG00000016848	lsg1	98	70.774	Hippocampus_comes
ENSSFOG00015008955	lsg1	100	74.531	ENSIPUG00000008631	lsg1	98	73.802	Ictalurus_punctatus
ENSSFOG00015008955	lsg1	75	59.960	ENSSTOG00000010234	LSG1	92	60.239	Ictidomys_tridecemlineatus
ENSSFOG00015008955	lsg1	99	65.070	ENSJJAG00000015513	Lsg1	98	65.501	Jaculus_jaculus
ENSSFOG00015008955	lsg1	98	70.720	ENSKMAG00000009681	lsg1	98	70.400	Kryptolebias_marmoratus
ENSSFOG00015008955	lsg1	98	70.353	ENSLBEG00000024261	lsg1	98	71.314	Labrus_bergylta
ENSSFOG00015008955	lsg1	100	65.676	ENSLACG00000013399	LSG1	98	66.313	Latimeria_chalumnae
ENSSFOG00015008955	lsg1	98	71.541	ENSLOCG00000004918	lsg1	98	72.013	Lepisosteus_oculatus
ENSSFOG00015008955	lsg1	99	63.150	ENSLAFG00000012919	-	98	63.679	Loxodonta_africana
ENSSFOG00015008955	lsg1	99	64.545	ENSMFAG00000039903	LSG1	98	63.833	Macaca_fascicularis
ENSSFOG00015008955	lsg1	99	64.545	ENSMMUG00000010708	LSG1	98	65.379	Macaca_mulatta
ENSSFOG00015008955	lsg1	99	64.545	ENSMNEG00000031538	LSG1	98	63.679	Macaca_nemestrina
ENSSFOG00015008955	lsg1	99	63.733	ENSMLEG00000041184	LSG1	98	64.551	Mandrillus_leucophaeus
ENSSFOG00015008955	lsg1	100	72.231	ENSMAMG00000000470	lsg1	98	72.249	Mastacembelus_armatus
ENSSFOG00015008955	lsg1	100	73.872	ENSMZEG00005017865	lsg1	98	73.450	Maylandia_zebra
ENSSFOG00015008955	lsg1	88	60.877	ENSMGAG00000007050	LSG1	100	63.621	Meleagris_gallopavo
ENSSFOG00015008955	lsg1	91	62.606	ENSMAUG00000016976	Lsg1	90	63.368	Mesocricetus_auratus
ENSSFOG00015008955	lsg1	99	63.636	ENSMICG00000049087	LSG1	98	63.889	Microcebus_murinus
ENSSFOG00015008955	lsg1	99	63.278	ENSMOCG00000022136	Lsg1	98	64.506	Microtus_ochrogaster
ENSSFOG00015008955	lsg1	86	80.000	ENSMMOG00000008884	lsg1	98	70.787	Mola_mola
ENSSFOG00015008955	lsg1	99	57.298	ENSMODG00000019828	LSG1	98	57.121	Monodelphis_domestica
ENSSFOG00015008955	lsg1	99	65.438	MGP_CAROLIEiJ_G0020648	Lsg1	98	65.938	Mus_caroli
ENSSFOG00015008955	lsg1	99	65.070	ENSMUSG00000022538	Lsg1	98	65.512	Mus_musculus
ENSSFOG00015008955	lsg1	98	64.743	MGP_PahariEiJ_G0016352	Lsg1	98	64.688	Mus_pahari
ENSSFOG00015008955	lsg1	99	64.923	MGP_SPRETEiJ_G0021544	Lsg1	98	65.415	Mus_spretus
ENSSFOG00015008955	lsg1	100	62.500	ENSMPUG00000003734	LSG1	98	62.769	Mustela_putorius_furo
ENSSFOG00015008955	lsg1	100	63.897	ENSMLUG00000012548	LSG1	98	63.945	Myotis_lucifugus
ENSSFOG00015008955	lsg1	99	62.693	ENSNGAG00000021872	Lsg1	98	63.551	Nannospalax_galili
ENSSFOG00015008955	lsg1	99	63.568	ENSNLEG00000008293	LSG1	98	65.015	Nomascus_leucogenys
ENSSFOG00015008955	lsg1	68	71.134	ENSMEUG00000009041	-	85	71.134	Notamacropus_eugenii
ENSSFOG00015008955	lsg1	100	73.344	ENSONIG00000002635	lsg1	98	73.028	Oreochromis_niloticus
ENSSFOG00015008955	lsg1	95	65.650	ENSOANG00000012742	LSG1	99	65.169	Ornithorhynchus_anatinus
ENSSFOG00015008955	lsg1	99	64.211	ENSOCUG00000004817	LSG1	98	65.084	Oryctolagus_cuniculus
ENSSFOG00015008955	lsg1	98	71.611	ENSORLG00000007695	lsg1	98	71.611	Oryzias_latipes
ENSSFOG00015008955	lsg1	98	71.065	ENSORLG00020016286	lsg1	98	71.451	Oryzias_latipes_hni
ENSSFOG00015008955	lsg1	98	70.860	ENSORLG00015012025	lsg1	98	71.497	Oryzias_latipes_hsok
ENSSFOG00015008955	lsg1	98	70.860	ENSOMEG00000022379	lsg1	98	71.019	Oryzias_melastigma
ENSSFOG00015008955	lsg1	99	62.739	ENSOGAG00000003475	LSG1	98	63.957	Otolemur_garnettii
ENSSFOG00015008955	lsg1	100	63.843	ENSOARG00000020403	LSG1	98	64.561	Ovis_aries
ENSSFOG00015008955	lsg1	99	63.922	ENSPPAG00000029271	LSG1	98	64.396	Pan_paniscus
ENSSFOG00015008955	lsg1	100	62.725	ENSPPRG00000010281	LSG1	98	63.014	Panthera_pardus
ENSSFOG00015008955	lsg1	100	63.540	ENSPTIG00000010789	LSG1	98	63.846	Panthera_tigris_altaica
ENSSFOG00015008955	lsg1	99	64.103	ENSPTRG00000015760	LSG1	98	64.241	Pan_troglodytes
ENSSFOG00015008955	lsg1	99	64.394	ENSPANG00000018249	LSG1	98	63.679	Papio_anubis
ENSSFOG00015008955	lsg1	99	75.430	ENSPKIG00000002895	lsg1	98	76.320	Paramormyrops_kingsleyae
ENSSFOG00015008955	lsg1	96	60.763	ENSPSIG00000009821	LSG1	99	61.154	Pelodiscus_sinensis
ENSSFOG00015008955	lsg1	95	71.475	ENSPMGG00000000931	lsg1	100	70.115	Periophthalmus_magnuspinnatus
ENSSFOG00015008955	lsg1	99	63.348	ENSPEMG00000012082	-	98	63.790	Peromyscus_maniculatus_bairdii
ENSSFOG00015008955	lsg1	100	62.369	ENSPMAG00000007451	lsg1	98	61.840	Petromyzon_marinus
ENSSFOG00015008955	lsg1	100	65.625	ENSPCIG00000013890	LSG1	80	65.625	Phascolarctos_cinereus
ENSSFOG00015008955	lsg1	97	73.151	ENSPFOG00000021882	lsg1	98	72.425	Poecilia_formosa
ENSSFOG00015008955	lsg1	97	72.186	ENSPLAG00000019536	lsg1	98	71.474	Poecilia_latipinna
ENSSFOG00015008955	lsg1	97	72.115	ENSPMEG00000017281	lsg1	98	71.406	Poecilia_mexicana
ENSSFOG00015008955	lsg1	97	62.243	ENSPREG00000006048	lsg1	98	62.303	Poecilia_reticulata
ENSSFOG00015008955	lsg1	92	62.336	ENSPPYG00000014425	LSG1	98	62.732	Pongo_abelii
ENSSFOG00015008955	lsg1	89	65.789	ENSPCAG00000005511	LSG1	88	69.355	Procavia_capensis
ENSSFOG00015008955	lsg1	99	62.651	ENSPCOG00000012360	LSG1	98	62.043	Propithecus_coquereli
ENSSFOG00015008955	lsg1	100	72.657	ENSPNYG00000021994	lsg1	98	72.214	Pundamilia_nyererei
ENSSFOG00015008955	lsg1	100	73.107	ENSPNAG00000015533	lsg1	98	73.302	Pygocentrus_nattereri
ENSSFOG00015008955	lsg1	99	62.222	ENSRNOG00000001727	Lsg1	98	64.396	Rattus_norvegicus
ENSSFOG00015008955	lsg1	99	63.008	ENSRBIG00000029053	LSG1	98	64.551	Rhinopithecus_bieti
ENSSFOG00015008955	lsg1	99	63.008	ENSRROG00000037702	LSG1	98	64.551	Rhinopithecus_roxellana
ENSSFOG00015008955	lsg1	82	40.706	YGL099W	LSG1	75	41.068	Saccharomyces_cerevisiae
ENSSFOG00015008955	lsg1	99	64.448	ENSSBOG00000034938	LSG1	98	65.170	Saimiri_boliviensis_boliviensis
ENSSFOG00015008955	lsg1	77	62.977	ENSSHAG00000003487	LSG1	100	62.335	Sarcophilus_harrisii
ENSSFOG00015008955	lsg1	98	76.228	ENSSDUG00000004622	lsg1	98	76.228	Seriola_dumerili
ENSSFOG00015008955	lsg1	98	74.881	ENSSLDG00000010869	lsg1	98	73.968	Seriola_lalandi_dorsalis
ENSSFOG00015008955	lsg1	83	65.789	ENSSARG00000012981	LSG1	82	64.624	Sorex_araneus
ENSSFOG00015008955	lsg1	100	65.753	ENSSPUG00000016347	LSG1	98	65.785	Sphenodon_punctatus
ENSSFOG00015008955	lsg1	100	71.987	ENSSPAG00000005508	lsg1	99	72.480	Stegastes_partitus
ENSSFOG00015008955	lsg1	100	63.093	ENSSSCG00000011827	LSG1	98	63.522	Sus_scrofa
ENSSFOG00015008955	lsg1	88	61.706	ENSTGUG00000009068	LSG1	99	62.167	Taeniopygia_guttata
ENSSFOG00015008955	lsg1	97	68.320	ENSTRUG00000017380	lsg1	98	67.994	Takifugu_rubripes
ENSSFOG00015008955	lsg1	97	71.746	ENSTNIG00000015570	lsg1	98	73.046	Tetraodon_nigroviridis
ENSSFOG00015008955	lsg1	91	74.194	ENSTTRG00000000559	LSG1	89	74.194	Tursiops_truncatus
ENSSFOG00015008955	lsg1	100	62.930	ENSUAMG00000012454	LSG1	98	63.664	Ursus_americanus
ENSSFOG00015008955	lsg1	100	62.930	ENSUMAG00000000855	LSG1	98	63.664	Ursus_maritimus
ENSSFOG00015008955	lsg1	95	61.049	ENSVPAG00000012400	LSG1	100	60.731	Vicugna_pacos
ENSSFOG00015008955	lsg1	99	62.142	ENSVVUG00000008956	LSG1	97	64.094	Vulpes_vulpes
ENSSFOG00015008955	lsg1	100	64.778	ENSXETG00000003451	lsg1	98	64.724	Xenopus_tropicalis
ENSSFOG00015008955	lsg1	97	72.464	ENSXCOG00000003239	lsg1	98	72.436	Xiphophorus_couchianus
ENSSFOG00015008955	lsg1	97	71.474	ENSXMAG00000005536	lsg1	98	71.562	Xiphophorus_maculatus