EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015008963 (Gene tree)
Gene ID: 108929861
Gene Symbol: prpf4
Alias: mg:ab03a02|zgc:65943
Full Name: pre-mRNA processing factor 4
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 7869 bases
Position: chrKV410906.1:3262252-3270120
Accession: 108929861
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015013887	PRP4	PF08799.11	7.3e-14	1	1
ENSSFOP00015013910	PRP4	PF08799.11	7.3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015014058	-	2547	-	ENSSFOP00015013887	507 (aa)	-	A0A0P7WRL1
ENSSFOT00015014081	-	2563	XM_018744688	ENSSFOP00015013910	507 (aa)	XP_018600204	A0A0P7WRL1

Gene Model

Click here to download ENSSFOG00015008963's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015008963's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015008963	prpf4	60	30.909	ENSSFOG00015023537	tbl3	55	30.909
ENSSFOG00015008963	prpf4	58	30.901	ENSSFOG00015014856	-	90	30.901
ENSSFOG00015008963	prpf4	62	30.901	ENSSFOG00015011138	wdr5	90	30.901

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015008963	prpf4	99	82.178	ENSG00000136875	PRPF4	97	82.178	Homo_sapiens
ENSSFOG00015008963	prpf4	99	82.402	ENSAPOG00000014132	prpf4	99	82.402	Acanthochromis_polyacanthus
ENSSFOG00015008963	prpf4	99	81.980	ENSAMEG00000013048	PRPF4	95	81.980	Ailuropoda_melanoleuca
ENSSFOG00015008963	prpf4	100	81.765	ENSACIG00000005579	prpf4	100	81.765	Amphilophus_citrinellus
ENSSFOG00015008963	prpf4	100	81.569	ENSAOCG00000005457	prpf4	100	81.569	Amphiprion_ocellaris
ENSSFOG00015008963	prpf4	100	81.373	ENSAPEG00000000776	prpf4	100	81.373	Amphiprion_percula
ENSSFOG00015008963	prpf4	100	81.996	ENSATEG00000023013	prpf4	100	81.996	Anabas_testudineus
ENSSFOG00015008963	prpf4	99	82.970	ENSAPLG00000006534	PRPF4	94	82.970	Anas_platyrhynchos
ENSSFOG00015008963	prpf4	99	82.283	ENSACAG00000015110	PRPF4	97	82.283	Anolis_carolinensis
ENSSFOG00015008963	prpf4	99	81.980	ENSANAG00000022464	PRPF4	93	81.980	Aotus_nancymaae
ENSSFOG00015008963	prpf4	100	81.961	ENSACLG00000019031	prpf4	100	81.961	Astatotilapia_calliptera
ENSSFOG00015008963	prpf4	100	68.069	ENSAMXG00000006756	prpf4	100	82.249	Astyanax_mexicanus
ENSSFOG00015008963	prpf4	99	81.980	ENSBTAG00000004571	PRPF4	97	81.980	Bos_taurus
ENSSFOG00015008963	prpf4	89	45.796	WBGene00007972	prp-4	91	45.796	Caenorhabditis_elegans
ENSSFOG00015008963	prpf4	99	81.980	ENSCJAG00000017856	PRPF4	97	81.980	Callithrix_jacchus
ENSSFOG00015008963	prpf4	99	81.980	ENSCAFG00000003224	PRPF4	94	81.980	Canis_familiaris
ENSSFOG00015008963	prpf4	99	81.980	ENSCAFG00020022637	PRPF4	97	81.980	Canis_lupus_dingo
ENSSFOG00015008963	prpf4	99	81.782	ENSCHIG00000024648	-	97	81.782	Capra_hircus
ENSSFOG00015008963	prpf4	99	81.782	ENSTSYG00000010366	PRPF4	97	81.782	Carlito_syrichta
ENSSFOG00015008963	prpf4	89	75.912	ENSCAPG00000008935	PRPF4	97	74.702	Cavia_aperea
ENSSFOG00015008963	prpf4	99	81.584	ENSCPOG00000010747	-	97	81.584	Cavia_porcellus
ENSSFOG00015008963	prpf4	99	76.634	ENSCPOG00000014729	-	97	76.634	Cavia_porcellus
ENSSFOG00015008963	prpf4	99	82.178	ENSCCAG00000028990	PRPF4	97	82.178	Cebus_capucinus
ENSSFOG00015008963	prpf4	99	81.980	ENSCATG00000021552	PRPF4	97	81.980	Cercocebus_atys
ENSSFOG00015008963	prpf4	99	81.980	ENSCLAG00000013448	PRPF4	97	81.980	Chinchilla_lanigera
ENSSFOG00015008963	prpf4	89	81.858	ENSCHOG00000007233	PRPF4	100	81.858	Choloepus_hoffmanni
ENSSFOG00015008963	prpf4	100	82.249	ENSCPBG00000019136	PRPF4	73	82.249	Chrysemys_picta_bellii
ENSSFOG00015008963	prpf4	99	59.921	ENSCING00000001299	-	97	59.921	Ciona_intestinalis
ENSSFOG00015008963	prpf4	99	60.079	ENSCSAVG00000009178	-	99	61.075	Ciona_savignyi
ENSSFOG00015008963	prpf4	99	81.980	ENSCANG00000003246	PRPF4	97	81.980	Colobus_angolensis_palliatus
ENSSFOG00015008963	prpf4	99	82.178	ENSCGRG00001016992	Prpf4	97	82.178	Cricetulus_griseus_chok1gshd
ENSSFOG00015008963	prpf4	99	82.178	ENSCGRG00000017560	Prpf4	97	82.178	Cricetulus_griseus_crigri
ENSSFOG00015008963	prpf4	100	80.906	ENSCSEG00000020451	prpf4	100	80.906	Cynoglossus_semilaevis
ENSSFOG00015008963	prpf4	100	88.955	ENSDARG00000067639	prpf4	100	88.955	Danio_rerio
ENSSFOG00015008963	prpf4	99	81.782	ENSDNOG00000013203	PRPF4	97	81.782	Dasypus_novemcinctus
ENSSFOG00015008963	prpf4	99	81.980	ENSDORG00000026275	Prpf4	97	81.980	Dipodomys_ordii
ENSSFOG00015008963	prpf4	99	50.909	FBgn0036733	U4-U6-60K	99	51.273	Drosophila_melanogaster
ENSSFOG00015008963	prpf4	99	81.980	ENSETEG00000020389	PRPF4	97	81.980	Echinops_telfairi
ENSSFOG00015008963	prpf4	99	71.171	ENSEBUG00000015229	prpf4	88	71.622	Eptatretus_burgeri
ENSSFOG00015008963	prpf4	99	81.980	ENSEASG00005022678	PRPF4	97	81.980	Equus_asinus_asinus
ENSSFOG00015008963	prpf4	99	81.980	ENSECAG00000007072	PRPF4	97	81.980	Equus_caballus
ENSSFOG00015008963	prpf4	84	85.356	ENSEEUG00000007480	PRPF4	96	65.306	Erinaceus_europaeus
ENSSFOG00015008963	prpf4	100	87.574	ENSELUG00000007510	prpf4	100	87.574	Esox_lucius
ENSSFOG00015008963	prpf4	99	81.980	ENSFCAG00000005514	PRPF4	97	81.980	Felis_catus
ENSSFOG00015008963	prpf4	99	81.222	ENSFALG00000005423	PRPF4	85	81.222	Ficedula_albicollis
ENSSFOG00015008963	prpf4	99	82.178	ENSFDAG00000005839	PRPF4	97	82.178	Fukomys_damarensis
ENSSFOG00015008963	prpf4	100	80.980	ENSFHEG00000001300	prpf4	100	80.980	Fundulus_heteroclitus
ENSSFOG00015008963	prpf4	99	83.004	ENSGALG00000008857	PRPF4	94	83.004	Gallus_gallus
ENSSFOG00015008963	prpf4	88	77.812	ENSGAFG00000012164	prpf4	69	77.812	Gambusia_affinis
ENSSFOG00015008963	prpf4	100	72.941	ENSGACG00000015476	prpf4	100	72.745	Gasterosteus_aculeatus
ENSSFOG00015008963	prpf4	100	82.249	ENSGAGG00000025029	PRPF4	94	82.249	Gopherus_agassizii
ENSSFOG00015008963	prpf4	99	82.178	ENSGGOG00000006943	PRPF4	97	82.178	Gorilla_gorilla
ENSSFOG00015008963	prpf4	100	81.961	ENSHBUG00000000562	prpf4	100	81.988	Haplochromis_burtoni
ENSSFOG00015008963	prpf4	99	66.139	ENSHGLG00000003838	-	97	66.139	Heterocephalus_glaber_female
ENSSFOG00015008963	prpf4	96	70.021	ENSHGLG00000016628	-	95	70.842	Heterocephalus_glaber_female
ENSSFOG00015008963	prpf4	99	81.782	ENSHGLG00000015191	PRPF4	97	81.782	Heterocephalus_glaber_female
ENSSFOG00015008963	prpf4	99	66.139	ENSHGLG00100005571	-	97	66.139	Heterocephalus_glaber_male
ENSSFOG00015008963	prpf4	100	87.771	ENSIPUG00000017956	PRPF4	100	87.771	Ictalurus_punctatus
ENSSFOG00015008963	prpf4	99	81.782	ENSSTOG00000027833	PRPF4	97	81.782	Ictidomys_tridecemlineatus
ENSSFOG00015008963	prpf4	99	81.782	ENSJJAG00000008838	Prpf4	97	81.782	Jaculus_jaculus
ENSSFOG00015008963	prpf4	100	81.373	ENSKMAG00000013236	prpf4	100	81.373	Kryptolebias_marmoratus
ENSSFOG00015008963	prpf4	100	80.709	ENSLBEG00000020611	prpf4	100	80.709	Labrus_bergylta
ENSSFOG00015008963	prpf4	100	78.978	ENSLACG00000016317	PRPF4	97	78.978	Latimeria_chalumnae
ENSSFOG00015008963	prpf4	100	88.166	ENSLOCG00000000581	prpf4	100	88.166	Lepisosteus_oculatus
ENSSFOG00015008963	prpf4	99	81.980	ENSLAFG00000018225	PRPF4	97	81.980	Loxodonta_africana
ENSSFOG00015008963	prpf4	99	81.782	ENSMFAG00000039397	PRPF4	97	81.782	Macaca_fascicularis
ENSSFOG00015008963	prpf4	99	81.980	ENSMMUG00000005844	PRPF4	97	81.980	Macaca_mulatta
ENSSFOG00015008963	prpf4	99	72.871	ENSMNEG00000033737	PRPF4	97	72.871	Macaca_nemestrina
ENSSFOG00015008963	prpf4	99	81.980	ENSMLEG00000040284	PRPF4	97	81.980	Mandrillus_leucophaeus
ENSSFOG00015008963	prpf4	100	82.192	ENSMAMG00000020141	prpf4	100	82.192	Mastacembelus_armatus
ENSSFOG00015008963	prpf4	100	81.961	ENSMZEG00005023205	prpf4	100	81.961	Maylandia_zebra
ENSSFOG00015008963	prpf4	99	82.411	ENSMGAG00000001796	PRPF4	94	82.411	Meleagris_gallopavo
ENSSFOG00015008963	prpf4	99	82.178	ENSMAUG00000018022	Prpf4	97	82.178	Mesocricetus_auratus
ENSSFOG00015008963	prpf4	99	81.980	ENSMICG00000015022	PRPF4	97	81.980	Microcebus_murinus
ENSSFOG00015008963	prpf4	99	81.782	ENSMOCG00000018273	Prpf4	97	81.782	Microtus_ochrogaster
ENSSFOG00015008963	prpf4	100	80.118	ENSMMOG00000021177	prpf4	100	80.118	Mola_mola
ENSSFOG00015008963	prpf4	99	82.600	ENSMODG00000004444	-	96	82.600	Monodelphis_domestica
ENSSFOG00015008963	prpf4	99	82.600	ENSMODG00000025096	-	93	82.600	Monodelphis_domestica
ENSSFOG00015008963	prpf4	100	81.961	ENSMALG00000013624	prpf4	100	81.961	Monopterus_albus
ENSSFOG00015008963	prpf4	99	82.178	MGP_CAROLIEiJ_G0026078	Prpf4	97	82.178	Mus_caroli
ENSSFOG00015008963	prpf4	99	82.178	ENSMUSG00000066148	Prpf4	97	82.178	Mus_musculus
ENSSFOG00015008963	prpf4	99	82.376	MGP_PahariEiJ_G0028413	Prpf4	97	82.376	Mus_pahari
ENSSFOG00015008963	prpf4	99	82.178	MGP_SPRETEiJ_G0027042	Prpf4	97	82.178	Mus_spretus
ENSSFOG00015008963	prpf4	99	81.980	ENSMPUG00000007883	PRPF4	97	81.980	Mustela_putorius_furo
ENSSFOG00015008963	prpf4	99	80.792	ENSMLUG00000008626	-	94	80.792	Myotis_lucifugus
ENSSFOG00015008963	prpf4	99	82.178	ENSMLUG00000015309	-	94	82.178	Myotis_lucifugus
ENSSFOG00015008963	prpf4	99	76.634	ENSNGAG00000000468	Prpf4	97	76.634	Nannospalax_galili
ENSSFOG00015008963	prpf4	100	82.157	ENSNBRG00000007972	prpf4	100	82.157	Neolamprologus_brichardi
ENSSFOG00015008963	prpf4	99	81.980	ENSNLEG00000016647	PRPF4	97	81.980	Nomascus_leucogenys
ENSSFOG00015008963	prpf4	99	82.600	ENSMEUG00000013256	PRPF4	97	82.600	Notamacropus_eugenii
ENSSFOG00015008963	prpf4	99	82.178	ENSOPRG00000005302	PRPF4	97	82.178	Ochotona_princeps
ENSSFOG00015008963	prpf4	99	81.980	ENSODEG00000018147	PRPF4	97	81.980	Octodon_degus
ENSSFOG00015008963	prpf4	100	81.765	ENSONIG00000012671	prpf4	100	81.765	Oreochromis_niloticus
ENSSFOG00015008963	prpf4	99	82.178	ENSOCUG00000005046	PRPF4	97	82.178	Oryctolagus_cuniculus
ENSSFOG00015008963	prpf4	100	79.724	ENSORLG00000019641	prpf4	100	79.724	Oryzias_latipes
ENSSFOG00015008963	prpf4	100	79.724	ENSORLG00020019438	prpf4	100	79.724	Oryzias_latipes_hni
ENSSFOG00015008963	prpf4	100	79.724	ENSOMEG00000020941	prpf4	100	80.665	Oryzias_melastigma
ENSSFOG00015008963	prpf4	99	78.020	ENSOGAG00000007802	PRPF4	95	78.020	Otolemur_garnettii
ENSSFOG00015008963	prpf4	99	81.782	ENSOARG00000006319	PRPF4	94	81.782	Ovis_aries
ENSSFOG00015008963	prpf4	99	82.178	ENSPPAG00000041797	PRPF4	97	82.178	Pan_paniscus
ENSSFOG00015008963	prpf4	99	81.980	ENSPPRG00000014360	PRPF4	97	81.980	Panthera_pardus
ENSSFOG00015008963	prpf4	99	81.980	ENSPTIG00000009574	PRPF4	97	81.980	Panthera_tigris_altaica
ENSSFOG00015008963	prpf4	99	82.178	ENSPTRG00000021274	PRPF4	97	82.178	Pan_troglodytes
ENSSFOG00015008963	prpf4	99	81.782	ENSPANG00000025776	PRPF4	93	81.782	Papio_anubis
ENSSFOG00015008963	prpf4	100	92.308	ENSPKIG00000017259	prpf4	100	92.308	Paramormyrops_kingsleyae
ENSSFOG00015008963	prpf4	100	81.460	ENSPSIG00000010713	PRPF4	89	81.460	Pelodiscus_sinensis
ENSSFOG00015008963	prpf4	100	60.000	ENSPMGG00000000997	prpf4	98	60.917	Periophthalmus_magnuspinnatus
ENSSFOG00015008963	prpf4	99	82.178	ENSPEMG00000024115	Prpf4	97	82.178	Peromyscus_maniculatus_bairdii
ENSSFOG00015008963	prpf4	99	82.800	ENSPCIG00000003821	PRPF4	97	82.800	Phascolarctos_cinereus
ENSSFOG00015008963	prpf4	100	74.319	ENSPFOG00000013524	prpf4	99	77.508	Poecilia_formosa
ENSSFOG00015008963	prpf4	93	76.000	ENSPLAG00000011620	prpf4	99	73.860	Poecilia_latipinna
ENSSFOG00015008963	prpf4	98	78.171	ENSPMEG00000006813	prpf4	100	78.171	Poecilia_mexicana
ENSSFOG00015008963	prpf4	99	81.980	ENSPCAG00000002561	PRPF4	98	81.980	Procavia_capensis
ENSSFOG00015008963	prpf4	99	82.178	ENSPCOG00000011975	PRPF4	97	82.178	Propithecus_coquereli
ENSSFOG00015008963	prpf4	99	79.010	ENSPVAG00000004708	PRPF4	97	79.010	Pteropus_vampyrus
ENSSFOG00015008963	prpf4	100	81.961	ENSPNYG00000008013	prpf4	100	81.961	Pundamilia_nyererei
ENSSFOG00015008963	prpf4	100	89.744	ENSPNAG00000000697	prpf4	100	89.744	Pygocentrus_nattereri
ENSSFOG00015008963	prpf4	99	81.980	ENSRNOG00000014777	Prpf4	97	81.980	Rattus_norvegicus
ENSSFOG00015008963	prpf4	99	81.980	ENSRBIG00000040221	PRPF4	97	81.980	Rhinopithecus_bieti
ENSSFOG00015008963	prpf4	99	81.980	ENSRROG00000040240	PRPF4	97	81.980	Rhinopithecus_roxellana
ENSSFOG00015008963	prpf4	99	82.800	ENSSHAG00000017658	PRPF4	96	82.800	Sarcophilus_harrisii
ENSSFOG00015008963	prpf4	100	80.784	ENSSMAG00000008889	prpf4	100	80.784	Scophthalmus_maximus
ENSSFOG00015008963	prpf4	99	78.543	ENSSDUG00000022083	prpf4	99	78.937	Seriola_dumerili
ENSSFOG00015008963	prpf4	99	78.740	ENSSLDG00000008115	prpf4	99	79.134	Seriola_lalandi_dorsalis
ENSSFOG00015008963	prpf4	99	82.213	ENSSPUG00000015582	PRPF4	97	82.213	Sphenodon_punctatus
ENSSFOG00015008963	prpf4	100	75.439	ENSSPAG00000011286	prpf4	100	75.439	Stegastes_partitus
ENSSFOG00015008963	prpf4	99	81.980	ENSSSCG00000024648	PRPF4	97	81.980	Sus_scrofa
ENSSFOG00015008963	prpf4	97	83.164	ENSTGUG00000002623	PRPF4	100	83.231	Taeniopygia_guttata
ENSSFOG00015008963	prpf4	100	80.354	ENSTRUG00000008853	prpf4	100	80.354	Takifugu_rubripes
ENSSFOG00015008963	prpf4	100	80.709	ENSTNIG00000013250	prpf4	100	80.709	Tetraodon_nigroviridis
ENSSFOG00015008963	prpf4	99	75.050	ENSTBEG00000000821	PRPF4	97	75.050	Tupaia_belangeri
ENSSFOG00015008963	prpf4	89	82.550	ENSTTRG00000003246	PRPF4	85	82.550	Tursiops_truncatus
ENSSFOG00015008963	prpf4	70	71.831	ENSUAMG00000018288	PRPF4	90	76.656	Ursus_americanus
ENSSFOG00015008963	prpf4	99	81.386	ENSUMAG00000019375	PRPF4	97	81.386	Ursus_maritimus
ENSSFOG00015008963	prpf4	99	81.980	ENSVPAG00000005281	PRPF4	97	81.980	Vicugna_pacos
ENSSFOG00015008963	prpf4	99	81.746	ENSVVUG00000002476	PRPF4	99	81.746	Vulpes_vulpes
ENSSFOG00015008963	prpf4	71	59.331	ENSXCOG00000006101	prpf4	93	61.881	Xiphophorus_couchianus
ENSSFOG00015008963	prpf4	91	67.026	ENSXMAG00000002750	prpf4	99	68.369	Xiphophorus_maculatus