EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015009069 (Gene tree)
Gene ID: 108918904
Gene Symbol: exosc1
Alias: -
Full Name: exosome complex component CSL4-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 6112 bases
Position: chrKV411259.1:1655130-1661241
Accession: 108918904
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015014045	EXOSC1	PF10447.9	3.2e-16	1	1
ENSSFOP00015014060	EXOSC1	PF10447.9	4.8e-16	1	1
ENSSFOP00015014095	EXOSC1	PF10447.9	2.3e-15	1	1
ENSSFOP00015014045	ECR1_N	PF14382.6	6e-12	1	1
ENSSFOP00015014060	ECR1_N	PF14382.6	2.1e-09	1	1
ENSSFOP00015014095	ECR1_N	PF14382.6	5.2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015014266	-	606	-	ENSSFOP00015014095	201 (aa)	-	-
ENSSFOT00015014216	-	2839	XM_018726520	ENSSFOP00015014045	194 (aa)	XP_018582036	A0A1W4Y1D4
ENSSFOT00015014231	-	3020	-	ENSSFOP00015014060	221 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015009069's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015009069's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015009069	exosc1	100	88.660	ENSSFOG00015016289	-	100	88.660

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015009069	exosc1	98	81.675	ENSG00000171311	EXOSC1	98	81.675	Homo_sapiens
ENSSFOG00015009069	exosc1	100	92.268	ENSAPOG00000007822	exosc1	100	92.268	Acanthochromis_polyacanthus
ENSSFOG00015009069	exosc1	98	83.246	ENSAMEG00000000129	EXOSC1	98	83.246	Ailuropoda_melanoleuca
ENSSFOG00015009069	exosc1	95	90.811	ENSACIG00000018956	exosc1	95	87.629	Amphilophus_citrinellus
ENSSFOG00015009069	exosc1	100	91.237	ENSAOCG00000010699	exosc1	100	91.237	Amphiprion_ocellaris
ENSSFOG00015009069	exosc1	93	80.000	ENSAPEG00000012690	exosc1	97	80.000	Amphiprion_percula
ENSSFOG00015009069	exosc1	100	91.237	ENSATEG00000018683	exosc1	100	91.237	Anabas_testudineus
ENSSFOG00015009069	exosc1	98	78.947	ENSACAG00000002101	EXOSC1	96	80.749	Anolis_carolinensis
ENSSFOG00015009069	exosc1	98	82.723	ENSANAG00000034669	EXOSC1	98	82.723	Aotus_nancymaae
ENSSFOG00015009069	exosc1	100	91.753	ENSACLG00000021243	exosc1	100	91.753	Astatotilapia_calliptera
ENSSFOG00015009069	exosc1	100	93.299	ENSAMXG00000011116	exosc1	100	93.299	Astyanax_mexicanus
ENSSFOG00015009069	exosc1	99	82.812	ENSBTAG00000012699	EXOSC1	98	82.812	Bos_taurus
ENSSFOG00015009069	exosc1	94	35.602	WBGene00012966	exos-1	92	35.602	Caenorhabditis_elegans
ENSSFOG00015009069	exosc1	98	82.199	ENSCJAG00000016586	EXOSC1	98	82.199	Callithrix_jacchus
ENSSFOG00015009069	exosc1	99	82.292	ENSCAFG00000009068	EXOSC1	93	82.292	Canis_familiaris
ENSSFOG00015009069	exosc1	99	82.292	ENSCAFG00020006002	EXOSC1	93	82.292	Canis_lupus_dingo
ENSSFOG00015009069	exosc1	99	82.812	ENSCHIG00000015253	EXOSC1	98	82.812	Capra_hircus
ENSSFOG00015009069	exosc1	98	81.152	ENSTSYG00000000760	EXOSC1	98	81.152	Carlito_syrichta
ENSSFOG00015009069	exosc1	99	82.292	ENSCPOG00000001173	EXOSC1	98	82.292	Cavia_porcellus
ENSSFOG00015009069	exosc1	99	42.784	ENSCCAG00000023986	EXOSC1	98	42.784	Cebus_capucinus
ENSSFOG00015009069	exosc1	98	81.675	ENSCATG00000034114	EXOSC1	98	81.675	Cercocebus_atys
ENSSFOG00015009069	exosc1	98	82.723	ENSCLAG00000002463	EXOSC1	98	82.723	Chinchilla_lanigera
ENSSFOG00015009069	exosc1	98	81.152	ENSCSAG00000005870	EXOSC1	98	81.152	Chlorocebus_sabaeus
ENSSFOG00015009069	exosc1	95	70.109	ENSCHOG00000006477	EXOSC1	98	70.109	Choloepus_hoffmanni
ENSSFOG00015009069	exosc1	55	69.159	ENSCPBG00000011949	EXOSC1	92	66.667	Chrysemys_picta_bellii
ENSSFOG00015009069	exosc1	99	54.404	ENSCING00000022734	-	92	54.404	Ciona_intestinalis
ENSSFOG00015009069	exosc1	99	56.477	ENSCSAVG00000010865	-	98	56.477	Ciona_savignyi
ENSSFOG00015009069	exosc1	98	81.675	ENSCANG00000034159	EXOSC1	98	81.675	Colobus_angolensis_palliatus
ENSSFOG00015009069	exosc1	98	81.675	ENSCGRG00001000335	Exosc1	98	81.675	Cricetulus_griseus_chok1gshd
ENSSFOG00015009069	exosc1	98	81.675	ENSCGRG00000011602	Exosc1	98	81.675	Cricetulus_griseus_crigri
ENSSFOG00015009069	exosc1	100	78.351	ENSCSEG00000007895	exosc1	97	78.351	Cynoglossus_semilaevis
ENSSFOG00015009069	exosc1	100	85.052	ENSCVAG00000016748	exosc1	100	85.052	Cyprinodon_variegatus
ENSSFOG00015009069	exosc1	100	92.268	ENSDARG00000059841	exosc1	100	92.268	Danio_rerio
ENSSFOG00015009069	exosc1	74	79.310	ENSDNOG00000007983	EXOSC1	98	79.310	Dasypus_novemcinctus
ENSSFOG00015009069	exosc1	99	81.771	ENSDORG00000016528	Exosc1	98	81.771	Dipodomys_ordii
ENSSFOG00015009069	exosc1	95	49.474	FBgn0032346	Csl4	92	49.474	Drosophila_melanogaster
ENSSFOG00015009069	exosc1	98	81.152	ENSETEG00000002469	-	98	81.152	Echinops_telfairi
ENSSFOG00015009069	exosc1	97	65.625	ENSEBUG00000008164	exosc1	96	65.625	Eptatretus_burgeri
ENSSFOG00015009069	exosc1	98	74.346	ENSEASG00005008684	EXOSC1	98	74.346	Equus_asinus_asinus
ENSSFOG00015009069	exosc1	60	59.483	ENSECAG00000010621	EXOSC1	69	59.483	Equus_caballus
ENSSFOG00015009069	exosc1	99	81.250	ENSEEUG00000005647	EXOSC1	98	81.250	Erinaceus_europaeus
ENSSFOG00015009069	exosc1	99	84.264	ENSELUG00000017369	exosc1	87	84.264	Esox_lucius
ENSSFOG00015009069	exosc1	98	83.246	ENSFCAG00000040563	EXOSC1	92	83.246	Felis_catus
ENSSFOG00015009069	exosc1	98	78.010	ENSFALG00000008450	EXOSC1	98	78.010	Ficedula_albicollis
ENSSFOG00015009069	exosc1	98	83.246	ENSFDAG00000000846	EXOSC1	98	83.246	Fukomys_damarensis
ENSSFOG00015009069	exosc1	100	84.536	ENSFHEG00000009154	exosc1	100	84.536	Fundulus_heteroclitus
ENSSFOG00015009069	exosc1	100	90.206	ENSGMOG00000008993	exosc1	100	90.206	Gadus_morhua
ENSSFOG00015009069	exosc1	98	68.586	ENSGALG00000039917	EXOSC1	99	84.138	Gallus_gallus
ENSSFOG00015009069	exosc1	100	84.536	ENSGAFG00000010265	exosc1	95	84.536	Gambusia_affinis
ENSSFOG00015009069	exosc1	100	88.660	ENSGACG00000018936	exosc1	100	88.660	Gasterosteus_aculeatus
ENSSFOG00015009069	exosc1	98	78.010	ENSGAGG00000019192	EXOSC1	98	78.010	Gopherus_agassizii
ENSSFOG00015009069	exosc1	98	71.728	ENSGGOG00000003099	EXOSC1	98	71.728	Gorilla_gorilla
ENSSFOG00015009069	exosc1	100	91.753	ENSHBUG00000017857	exosc1	100	91.753	Haplochromis_burtoni
ENSSFOG00015009069	exosc1	98	82.723	ENSHGLG00000016927	EXOSC1	98	82.723	Heterocephalus_glaber_female
ENSSFOG00015009069	exosc1	98	82.723	ENSHGLG00100012208	EXOSC1	98	82.723	Heterocephalus_glaber_male
ENSSFOG00015009069	exosc1	100	89.691	ENSHCOG00000019882	exosc1	100	89.691	Hippocampus_comes
ENSSFOG00015009069	exosc1	100	93.814	ENSIPUG00000007685	exosc1	100	93.814	Ictalurus_punctatus
ENSSFOG00015009069	exosc1	99	81.771	ENSSTOG00000006615	EXOSC1	98	81.771	Ictidomys_tridecemlineatus
ENSSFOG00015009069	exosc1	61	64.706	ENSSTOG00000029860	-	91	64.706	Ictidomys_tridecemlineatus
ENSSFOG00015009069	exosc1	99	82.292	ENSJJAG00000013311	Exosc1	98	82.292	Jaculus_jaculus
ENSSFOG00015009069	exosc1	100	89.175	ENSKMAG00000001202	exosc1	82	89.175	Kryptolebias_marmoratus
ENSSFOG00015009069	exosc1	100	91.237	ENSLBEG00000011448	exosc1	100	91.237	Labrus_bergylta
ENSSFOG00015009069	exosc1	100	68.000	ENSLOCG00000003776	exosc1	100	68.000	Lepisosteus_oculatus
ENSSFOG00015009069	exosc1	98	82.723	ENSLAFG00000015983	EXOSC1	98	82.723	Loxodonta_africana
ENSSFOG00015009069	exosc1	98	81.675	ENSMFAG00000001493	EXOSC1	98	81.675	Macaca_fascicularis
ENSSFOG00015009069	exosc1	98	81.675	ENSMMUG00000020028	EXOSC1	91	81.675	Macaca_mulatta
ENSSFOG00015009069	exosc1	98	81.675	ENSMNEG00000029816	EXOSC1	98	81.675	Macaca_nemestrina
ENSSFOG00015009069	exosc1	99	75.521	ENSMLEG00000027643	EXOSC1	98	75.521	Mandrillus_leucophaeus
ENSSFOG00015009069	exosc1	100	91.753	ENSMAMG00000012200	exosc1	100	91.753	Mastacembelus_armatus
ENSSFOG00015009069	exosc1	100	91.753	ENSMZEG00005007042	exosc1	100	91.753	Maylandia_zebra
ENSSFOG00015009069	exosc1	98	72.251	ENSMAUG00000020462	-	98	72.251	Mesocricetus_auratus
ENSSFOG00015009069	exosc1	99	82.292	ENSMICG00000007664	EXOSC1	91	82.292	Microcebus_murinus
ENSSFOG00015009069	exosc1	98	81.675	ENSMOCG00000006004	-	98	81.675	Microtus_ochrogaster
ENSSFOG00015009069	exosc1	97	76.842	ENSMOCG00000017124	-	99	75.385	Microtus_ochrogaster
ENSSFOG00015009069	exosc1	100	66.495	ENSMMOG00000021403	exosc1	100	66.495	Mola_mola
ENSSFOG00015009069	exosc1	99	82.902	ENSMODG00000004213	EXOSC1	98	82.902	Monodelphis_domestica
ENSSFOG00015009069	exosc1	95	90.811	ENSMALG00000007061	exosc1	99	85.859	Monopterus_albus
ENSSFOG00015009069	exosc1	98	81.152	MGP_CAROLIEiJ_G0022959	Exosc1	98	81.152	Mus_caroli
ENSSFOG00015009069	exosc1	98	81.152	ENSMUSG00000034321	Exosc1	98	81.152	Mus_musculus
ENSSFOG00015009069	exosc1	98	81.675	MGP_PahariEiJ_G0014449	Exosc1	98	81.675	Mus_pahari
ENSSFOG00015009069	exosc1	98	81.152	MGP_SPRETEiJ_G0023880	Exosc1	98	81.152	Mus_spretus
ENSSFOG00015009069	exosc1	98	83.246	ENSMPUG00000017044	EXOSC1	98	83.246	Mustela_putorius_furo
ENSSFOG00015009069	exosc1	98	82.199	ENSMLUG00000009228	EXOSC1	98	82.199	Myotis_lucifugus
ENSSFOG00015009069	exosc1	99	79.688	ENSNGAG00000022033	Exosc1	98	79.688	Nannospalax_galili
ENSSFOG00015009069	exosc1	100	71.134	ENSNBRG00000024007	exosc1	99	71.134	Neolamprologus_brichardi
ENSSFOG00015009069	exosc1	98	81.152	ENSNLEG00000013872	EXOSC1	98	81.152	Nomascus_leucogenys
ENSSFOG00015009069	exosc1	58	75.000	ENSMEUG00000002246	EXOSC1	97	75.000	Notamacropus_eugenii
ENSSFOG00015009069	exosc1	99	81.250	ENSOPRG00000005065	EXOSC1	98	81.250	Ochotona_princeps
ENSSFOG00015009069	exosc1	98	83.246	ENSODEG00000016709	EXOSC1	98	83.246	Octodon_degus
ENSSFOG00015009069	exosc1	100	90.722	ENSONIG00000017683	exosc1	99	90.722	Oreochromis_niloticus
ENSSFOG00015009069	exosc1	59	91.228	ENSOANG00000006563	EXOSC1	98	87.805	Ornithorhynchus_anatinus
ENSSFOG00015009069	exosc1	99	76.562	ENSOCUG00000026461	-	98	76.562	Oryctolagus_cuniculus
ENSSFOG00015009069	exosc1	98	81.250	ENSOCUG00000011898	-	98	81.250	Oryctolagus_cuniculus
ENSSFOG00015009069	exosc1	100	85.128	ENSORLG00000011595	exosc1	100	85.128	Oryzias_latipes
ENSSFOG00015009069	exosc1	100	85.128	ENSORLG00020005831	exosc1	100	85.128	Oryzias_latipes_hni
ENSSFOG00015009069	exosc1	100	84.615	ENSORLG00015004317	exosc1	100	84.615	Oryzias_latipes_hsok
ENSSFOG00015009069	exosc1	100	70.619	ENSOMEG00000013907	exosc1	99	70.619	Oryzias_melastigma
ENSSFOG00015009069	exosc1	98	82.199	ENSOGAG00000016259	EXOSC1	98	82.199	Otolemur_garnettii
ENSSFOG00015009069	exosc1	99	82.292	ENSOARG00000010136	EXOSC1	98	82.292	Ovis_aries
ENSSFOG00015009069	exosc1	99	75.258	ENSPPAG00000039842	EXOSC1	98	75.258	Pan_paniscus
ENSSFOG00015009069	exosc1	98	83.246	ENSPPRG00000023366	EXOSC1	98	83.246	Panthera_pardus
ENSSFOG00015009069	exosc1	98	83.246	ENSPTIG00000017701	EXOSC1	98	83.246	Panthera_tigris_altaica
ENSSFOG00015009069	exosc1	98	81.675	ENSPTRG00000002808	EXOSC1	98	81.675	Pan_troglodytes
ENSSFOG00015009069	exosc1	98	81.675	ENSPANG00000021324	EXOSC1	98	81.675	Papio_anubis
ENSSFOG00015009069	exosc1	100	92.784	ENSPKIG00000016037	exosc1	100	92.784	Paramormyrops_kingsleyae
ENSSFOG00015009069	exosc1	75	78.082	ENSPSIG00000013571	EXOSC1	98	79.339	Pelodiscus_sinensis
ENSSFOG00015009069	exosc1	100	77.835	ENSPMGG00000014002	exosc1	100	77.835	Periophthalmus_magnuspinnatus
ENSSFOG00015009069	exosc1	98	81.675	ENSPEMG00000010710	-	98	81.675	Peromyscus_maniculatus_bairdii
ENSSFOG00015009069	exosc1	96	70.588	ENSPMAG00000000195	exosc1	97	69.634	Petromyzon_marinus
ENSSFOG00015009069	exosc1	99	82.292	ENSPCIG00000002210	EXOSC1	97	82.292	Phascolarctos_cinereus
ENSSFOG00015009069	exosc1	100	84.021	ENSPFOG00000006755	exosc1	95	84.021	Poecilia_formosa
ENSSFOG00015009069	exosc1	100	84.021	ENSPLAG00000005880	exosc1	100	84.021	Poecilia_latipinna
ENSSFOG00015009069	exosc1	100	84.021	ENSPMEG00000015598	exosc1	95	84.021	Poecilia_mexicana
ENSSFOG00015009069	exosc1	100	72.680	ENSPREG00000000405	exosc1	94	72.680	Poecilia_reticulata
ENSSFOG00015009069	exosc1	99	81.250	ENSPPYG00000002531	EXOSC1	98	81.250	Pongo_abelii
ENSSFOG00015009069	exosc1	98	81.675	ENSPCAG00000009135	EXOSC1	98	81.675	Procavia_capensis
ENSSFOG00015009069	exosc1	99	76.042	ENSPCOG00000027539	EXOSC1	98	76.042	Propithecus_coquereli
ENSSFOG00015009069	exosc1	98	82.723	ENSPVAG00000003372	EXOSC1	98	82.723	Pteropus_vampyrus
ENSSFOG00015009069	exosc1	100	91.753	ENSPNYG00000021745	exosc1	100	91.753	Pundamilia_nyererei
ENSSFOG00015009069	exosc1	100	93.299	ENSPNAG00000001944	exosc1	100	93.299	Pygocentrus_nattereri
ENSSFOG00015009069	exosc1	98	81.675	ENSRNOG00000048708	Exosc1	98	81.675	Rattus_norvegicus
ENSSFOG00015009069	exosc1	98	81.675	ENSRBIG00000035618	EXOSC1	98	81.675	Rhinopithecus_bieti
ENSSFOG00015009069	exosc1	98	81.675	ENSRROG00000032589	EXOSC1	91	81.675	Rhinopithecus_roxellana
ENSSFOG00015009069	exosc1	65	38.650	YNL232W	CSL4	55	38.650	Saccharomyces_cerevisiae
ENSSFOG00015009069	exosc1	98	82.723	ENSSBOG00000000359	EXOSC1	98	82.723	Saimiri_boliviensis_boliviensis
ENSSFOG00015009069	exosc1	75	89.796	ENSSHAG00000018219	EXOSC1	100	89.796	Sarcophilus_harrisii
ENSSFOG00015009069	exosc1	100	91.753	ENSSMAG00000003721	exosc1	100	91.753	Scophthalmus_maximus
ENSSFOG00015009069	exosc1	100	91.237	ENSSDUG00000002993	exosc1	100	91.237	Seriola_dumerili
ENSSFOG00015009069	exosc1	100	91.237	ENSSLDG00000025181	exosc1	100	91.237	Seriola_lalandi_dorsalis
ENSSFOG00015009069	exosc1	98	71.204	ENSSARG00000000162	EXOSC1	98	71.204	Sorex_araneus
ENSSFOG00015009069	exosc1	98	76.963	ENSSPUG00000012263	EXOSC1	98	76.963	Sphenodon_punctatus
ENSSFOG00015009069	exosc1	100	82.474	ENSSPAG00000016792	exosc1	83	82.474	Stegastes_partitus
ENSSFOG00015009069	exosc1	98	82.199	ENSSSCG00000010518	EXOSC1	89	82.199	Sus_scrofa
ENSSFOG00015009069	exosc1	98	77.487	ENSTGUG00000009692	EXOSC1	98	77.487	Taeniopygia_guttata
ENSSFOG00015009069	exosc1	98	80.526	ENSTRUG00000007706	exosc1	98	80.526	Takifugu_rubripes
ENSSFOG00015009069	exosc1	98	80.311	ENSTNIG00000014079	exosc1	97	80.311	Tetraodon_nigroviridis
ENSSFOG00015009069	exosc1	98	76.963	ENSTBEG00000006011	EXOSC1	98	76.963	Tupaia_belangeri
ENSSFOG00015009069	exosc1	95	84.239	ENSTTRG00000009887	EXOSC1	100	84.239	Tursiops_truncatus
ENSSFOG00015009069	exosc1	99	66.667	ENSUAMG00000010266	EXOSC1	98	66.667	Ursus_americanus
ENSSFOG00015009069	exosc1	99	66.667	ENSUMAG00000022002	EXOSC1	98	66.667	Ursus_maritimus
ENSSFOG00015009069	exosc1	98	82.723	ENSVVUG00000023192	EXOSC1	62	82.723	Vulpes_vulpes
ENSSFOG00015009069	exosc1	99	77.202	ENSXETG00000003434	exosc1	99	77.202	Xenopus_tropicalis
ENSSFOG00015009069	exosc1	62	89.256	ENSXCOG00000014499	exosc1	93	89.256	Xiphophorus_couchianus
ENSSFOG00015009069	exosc1	100	73.196	ENSXMAG00000023382	exosc1	94	73.196	Xiphophorus_maculatus