EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015009585 (Gene tree)
Gene ID: 108920058
Gene Symbol: dkc1
Alias: fc87a02|fi24a05|fv62a07|wu:fa28f10|wu:fc87a02|wu:fi24a05|wu:fv62a07|zgc:110395
Full Name: dyskerin pseudouridine synthase 1
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 6746 bases
Position: chrKV411281.1:1616900-1623645
Accession: 108920058
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015014875	TruB_N	PF01509.18	6e-22	1	1
ENSSFOP00015014875	PUA	PF01472.20	6.9e-18	1	1
ENSSFOP00015014875	DKCLD	PF08068.12	2.1e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015015050	-	1977	XM_018728526	ENSSFOP00015014875	510 (aa)	XP_018584042	A0A1W4XXF2

Gene Model

Click here to download ENSSFOG00015009585's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015009585's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015009585	dkc1	89	79.957	ENSG00000130826	DKC1	99	87.805	Homo_sapiens
ENSSFOG00015009585	dkc1	96	83.469	ENSAPOG00000007799	dkc1	89	85.217	Acanthochromis_polyacanthus
ENSSFOG00015009585	dkc1	88	81.046	ENSAMEG00000002776	DKC1	90	81.046	Ailuropoda_melanoleuca
ENSSFOG00015009585	dkc1	85	87.356	ENSACIG00000022614	dkc1	88	86.395	Amphilophus_citrinellus
ENSSFOG00015009585	dkc1	100	82.031	ENSAOCG00000013159	dkc1	87	86.041	Amphiprion_ocellaris
ENSSFOG00015009585	dkc1	100	82.031	ENSAPEG00000002284	dkc1	87	87.529	Amphiprion_percula
ENSSFOG00015009585	dkc1	88	83.188	ENSATEG00000013682	dkc1	88	83.188	Anabas_testudineus
ENSSFOG00015009585	dkc1	90	81.290	ENSACAG00000015600	DKC1	77	83.070	Anolis_carolinensis
ENSSFOG00015009585	dkc1	89	79.741	ENSANAG00000022732	DKC1	90	79.741	Aotus_nancymaae
ENSSFOG00015009585	dkc1	81	90.291	ENSACLG00000015605	dkc1	81	91.960	Astatotilapia_calliptera
ENSSFOG00015009585	dkc1	90	88.889	ENSAMXG00000017108	dkc1	88	88.889	Astyanax_mexicanus
ENSSFOG00015009585	dkc1	88	80.652	ENSBTAG00000013045	DKC1	91	80.652	Bos_taurus
ENSSFOG00015009585	dkc1	81	63.990	WBGene00010478	K01G5.5	97	62.125	Caenorhabditis_elegans
ENSSFOG00015009585	dkc1	89	79.310	ENSCJAG00000004210	DKC1	90	79.310	Callithrix_jacchus
ENSSFOG00015009585	dkc1	85	82.798	ENSCAFG00000019620	-	84	82.798	Canis_familiaris
ENSSFOG00015009585	dkc1	81	75.061	ENSCAFG00000009311	-	86	72.082	Canis_familiaris
ENSSFOG00015009585	dkc1	85	82.798	ENSCAFG00020008918	-	84	82.798	Canis_lupus_dingo
ENSSFOG00015009585	dkc1	79	75.434	ENSCAFG00020009379	-	82	71.594	Canis_lupus_dingo
ENSSFOG00015009585	dkc1	88	80.870	ENSCHIG00000017392	DKC1	92	80.562	Capra_hircus
ENSSFOG00015009585	dkc1	85	79.691	ENSTSYG00000007681	DKC1	87	79.085	Carlito_syrichta
ENSSFOG00015009585	dkc1	79	82.195	ENSCAPG00000003342	DKC1	93	81.863	Cavia_aperea
ENSSFOG00015009585	dkc1	89	79.957	ENSCPOG00000008825	DKC1	91	79.487	Cavia_porcellus
ENSSFOG00015009585	dkc1	89	70.690	ENSCCAG00000027418	DKC1	89	70.690	Cebus_capucinus
ENSSFOG00015009585	dkc1	89	79.957	ENSCATG00000033602	DKC1	90	79.957	Cercocebus_atys
ENSSFOG00015009585	dkc1	85	82.192	ENSCLAG00000000720	DKC1	88	81.390	Chinchilla_lanigera
ENSSFOG00015009585	dkc1	89	79.957	ENSCSAG00000006706	DKC1	90	79.957	Chlorocebus_sabaeus
ENSSFOG00015009585	dkc1	90	80.828	ENSCPBG00000005858	DKC1	87	86.275	Chrysemys_picta_bellii
ENSSFOG00015009585	dkc1	81	78.147	ENSCING00000004599	-	82	76.782	Ciona_intestinalis
ENSSFOG00015009585	dkc1	81	79.087	ENSCSAVG00000010047	-	97	75.973	Ciona_savignyi
ENSSFOG00015009585	dkc1	89	79.957	ENSCANG00000027987	DKC1	90	79.957	Colobus_angolensis_palliatus
ENSSFOG00015009585	dkc1	89	79.310	ENSCGRG00001014574	-	91	78.846	Cricetulus_griseus_chok1gshd
ENSSFOG00015009585	dkc1	77	67.008	ENSCGRG00001016789	-	79	68.835	Cricetulus_griseus_chok1gshd
ENSSFOG00015009585	dkc1	77	67.008	ENSCGRG00000014809	-	77	68.835	Cricetulus_griseus_crigri
ENSSFOG00015009585	dkc1	89	79.310	ENSCGRG00000016075	-	91	78.846	Cricetulus_griseus_crigri
ENSSFOG00015009585	dkc1	79	89.578	ENSCSEG00000012633	dkc1	85	89.698	Cynoglossus_semilaevis
ENSSFOG00015009585	dkc1	86	86.073	ENSCVAG00000010155	dkc1	87	85.809	Cyprinodon_variegatus
ENSSFOG00015009585	dkc1	83	90.780	ENSDARG00000016484	dkc1	89	87.609	Danio_rerio
ENSSFOG00015009585	dkc1	88	80.694	ENSDNOG00000004218	DKC1	91	79.487	Dasypus_novemcinctus
ENSSFOG00015009585	dkc1	58	72.000	ENSDORG00000013566	-	100	72.000	Dipodomys_ordii
ENSSFOG00015009585	dkc1	90	70.065	FBgn0259937	Nop60B	98	67.117	Drosophila_melanogaster
ENSSFOG00015009585	dkc1	92	76.008	ENSETEG00000016095	DKC1	92	77.384	Echinops_telfairi
ENSSFOG00015009585	dkc1	63	80.997	ENSEBUG00000015962	dkc1	99	81.911	Eptatretus_burgeri
ENSSFOG00015009585	dkc1	94	76.875	ENSEASG00005007484	DKC1	84	82.989	Equus_asinus_asinus
ENSSFOG00015009585	dkc1	94	76.875	ENSECAG00000023524	DKC1	84	82.989	Equus_caballus
ENSSFOG00015009585	dkc1	82	83.099	ENSEEUG00000003323	DKC1	99	83.333	Erinaceus_europaeus
ENSSFOG00015009585	dkc1	90	88.478	ENSELUG00000014538	dkc1	89	88.478	Esox_lucius
ENSSFOG00015009585	dkc1	83	84.198	ENSFCAG00000006577	DKC1	90	79.605	Felis_catus
ENSSFOG00015009585	dkc1	85	83.146	ENSFALG00000011496	DKC1	88	81.345	Ficedula_albicollis
ENSSFOG00015009585	dkc1	85	82.028	ENSFDAG00000002516	DKC1	88	80.493	Fukomys_damarensis
ENSSFOG00015009585	dkc1	89	85.088	ENSFHEG00000004627	dkc1	90	84.565	Fundulus_heteroclitus
ENSSFOG00015009585	dkc1	76	90.000	ENSGMOG00000017277	dkc1	99	90.000	Gadus_morhua
ENSSFOG00015009585	dkc1	87	83.820	ENSGALG00000005054	DKC1	89	81.562	Gallus_gallus
ENSSFOG00015009585	dkc1	85	86.406	ENSGAFG00000011486	dkc1	77	84.649	Gambusia_affinis
ENSSFOG00015009585	dkc1	78	91.457	ENSGACG00000004373	dkc1	96	93.313	Gasterosteus_aculeatus
ENSSFOG00015009585	dkc1	87	81.208	ENSGAGG00000011330	DKC1	85	82.688	Gopherus_agassizii
ENSSFOG00015009585	dkc1	89	79.957	ENSGGOG00000001045	DKC1	90	79.957	Gorilla_gorilla
ENSSFOG00015009585	dkc1	97	81.288	ENSHBUG00000012436	dkc1	90	84.565	Haplochromis_burtoni
ENSSFOG00015009585	dkc1	89	78.541	ENSHGLG00000000649	DKC1	91	78.085	Heterocephalus_glaber_female
ENSSFOG00015009585	dkc1	85	80.361	ENSHGLG00100001153	DKC1	88	79.510	Heterocephalus_glaber_male
ENSSFOG00015009585	dkc1	85	87.007	ENSHCOG00000021099	dkc1	85	86.775	Hippocampus_comes
ENSSFOG00015009585	dkc1	90	86.985	ENSIPUG00000010309	dkc1	88	87.013	Ictalurus_punctatus
ENSSFOG00015009585	dkc1	89	69.099	ENSSTOG00000011904	-	82	70.112	Ictidomys_tridecemlineatus
ENSSFOG00015009585	dkc1	85	75.576	ENSSTOG00000020149	-	86	74.324	Ictidomys_tridecemlineatus
ENSSFOG00015009585	dkc1	89	79.140	ENSSTOG00000001074	-	91	80.631	Ictidomys_tridecemlineatus
ENSSFOG00015009585	dkc1	58	71.572	ENSJJAG00000010086	-	100	71.572	Jaculus_jaculus
ENSSFOG00015009585	dkc1	86	84.738	ENSKMAG00000008010	dkc1	90	82.826	Kryptolebias_marmoratus
ENSSFOG00015009585	dkc1	88	85.235	ENSLBEG00000019122	dkc1	95	83.191	Labrus_bergylta
ENSSFOG00015009585	dkc1	90	81.562	ENSLACG00000014025	DKC1	94	87.621	Latimeria_chalumnae
ENSSFOG00015009585	dkc1	91	88.817	ENSLOCG00000013713	dkc1	89	90.930	Lepisosteus_oculatus
ENSSFOG00015009585	dkc1	90	79.095	ENSLAFG00000000221	DKC1	90	79.095	Loxodonta_africana
ENSSFOG00015009585	dkc1	89	80.172	ENSMFAG00000032398	DKC1	78	80.172	Macaca_fascicularis
ENSSFOG00015009585	dkc1	89	79.957	ENSMMUG00000005768	DKC1	90	79.957	Macaca_mulatta
ENSSFOG00015009585	dkc1	89	79.957	ENSMNEG00000034503	DKC1	90	79.957	Macaca_nemestrina
ENSSFOG00015009585	dkc1	89	79.957	ENSMLEG00000034422	DKC1	90	79.957	Mandrillus_leucophaeus
ENSSFOG00015009585	dkc1	79	92.804	ENSMAMG00000005427	dkc1	89	93.216	Mastacembelus_armatus
ENSSFOG00015009585	dkc1	97	81.489	ENSMZEG00005014503	dkc1	90	84.783	Maylandia_zebra
ENSSFOG00015009585	dkc1	76	86.410	ENSMGAG00000009238	DKC1	87	84.483	Meleagris_gallopavo
ENSSFOG00015009585	dkc1	58	71.333	ENSMAUG00000016454	-	100	71.333	Mesocricetus_auratus
ENSSFOG00015009585	dkc1	79	73.839	ENSMICG00000002818	-	99	76.923	Microcebus_murinus
ENSSFOG00015009585	dkc1	85	82.529	ENSMICG00000038751	-	87	82.529	Microcebus_murinus
ENSSFOG00015009585	dkc1	58	68.333	ENSMOCG00000001169	-	100	68.333	Microtus_ochrogaster
ENSSFOG00015009585	dkc1	85	87.471	ENSMMOG00000020348	dkc1	87	92.462	Mola_mola
ENSSFOG00015009585	dkc1	90	77.342	ENSMODG00000009243	DKC1	69	86.398	Monodelphis_domestica
ENSSFOG00015009585	dkc1	96	82.317	ENSMALG00000009454	dkc1	88	85.275	Monopterus_albus
ENSSFOG00015009585	dkc1	89	70.213	MGP_CAROLIEiJ_G0033191	Dkc1	100	78.231	Mus_caroli
ENSSFOG00015009585	dkc1	90	79.487	ENSMUSG00000031403	Dkc1	100	72.000	Mus_musculus
ENSSFOG00015009585	dkc1	88	80.263	MGP_PahariEiJ_G0031735	Dkc1	100	71.333	Mus_pahari
ENSSFOG00015009585	dkc1	90	79.487	MGP_SPRETEiJ_G0034351	Dkc1	100	72.000	Mus_spretus
ENSSFOG00015009585	dkc1	82	85.000	ENSMPUG00000016136	DKC1	77	84.300	Mustela_putorius_furo
ENSSFOG00015009585	dkc1	85	77.079	ENSMLUG00000011918	DKC1	85	77.079	Myotis_lucifugus
ENSSFOG00015009585	dkc1	58	71.237	ENSNGAG00000015724	-	100	71.237	Nannospalax_galili
ENSSFOG00015009585	dkc1	80	89.614	ENSNBRG00000005638	dkc1	80	92.462	Neolamprologus_brichardi
ENSSFOG00015009585	dkc1	98	75.442	ENSNLEG00000014323	DKC1	99	75.240	Nomascus_leucogenys
ENSSFOG00015009585	dkc1	86	76.993	ENSMEUG00000001066	DKC1	95	77.315	Notamacropus_eugenii
ENSSFOG00015009585	dkc1	69	81.143	ENSOPRG00000005248	DKC1	70	81.143	Ochotona_princeps
ENSSFOG00015009585	dkc1	85	82.989	ENSODEG00000011816	-	91	79.870	Octodon_degus
ENSSFOG00015009585	dkc1	58	71.333	ENSODEG00000000549	-	100	71.333	Octodon_degus
ENSSFOG00015009585	dkc1	86	87.414	ENSONIG00000013889	dkc1	86	87.016	Oreochromis_niloticus
ENSSFOG00015009585	dkc1	84	84.954	ENSOANG00000008713	-	89	84.793	Ornithorhynchus_anatinus
ENSSFOG00015009585	dkc1	56	63.934	ENSOANG00000022295	-	85	63.961	Ornithorhynchus_anatinus
ENSSFOG00015009585	dkc1	89	79.957	ENSOCUG00000012646	DKC1	91	79.487	Oryctolagus_cuniculus
ENSSFOG00015009585	dkc1	90	82.751	ENSORLG00000018748	dkc1	83	85.714	Oryzias_latipes
ENSSFOG00015009585	dkc1	89	83.736	ENSOMEG00000005786	dkc1	88	86.381	Oryzias_melastigma
ENSSFOG00015009585	dkc1	100	74.102	ENSOGAG00000003399	DKC1	99	73.346	Otolemur_garnettii
ENSSFOG00015009585	dkc1	85	82.688	ENSOARG00000003047	DKC1	87	82.353	Ovis_aries
ENSSFOG00015009585	dkc1	89	79.654	ENSPPAG00000023820	DKC1	90	79.741	Pan_paniscus
ENSSFOG00015009585	dkc1	82	84.762	ENSPPRG00000009104	DKC1	90	79.605	Panthera_pardus
ENSSFOG00015009585	dkc1	84	82.009	ENSPTIG00000017469	DKC1	85	82.009	Panthera_tigris_altaica
ENSSFOG00015009585	dkc1	89	79.957	ENSPTRG00000043416	-	78	79.957	Pan_troglodytes
ENSSFOG00015009585	dkc1	89	79.957	ENSPTRG00000022449	DKC1	90	79.957	Pan_troglodytes
ENSSFOG00015009585	dkc1	89	79.957	ENSPANG00000011978	DKC1	90	79.957	Papio_anubis
ENSSFOG00015009585	dkc1	86	87.528	ENSPKIG00000008443	dkc1	92	86.560	Paramormyrops_kingsleyae
ENSSFOG00015009585	dkc1	70	90.756	ENSPSIG00000013765	DKC1	86	90.756	Pelodiscus_sinensis
ENSSFOG00015009585	dkc1	96	75.449	ENSPMGG00000004097	dkc1	73	87.437	Periophthalmus_magnuspinnatus
ENSSFOG00015009585	dkc1	77	67.194	ENSPEMG00000013348	Dkc1	88	81.026	Peromyscus_maniculatus_bairdii
ENSSFOG00015009585	dkc1	83	83.962	ENSPCIG00000016706	DKC1	77	79.039	Phascolarctos_cinereus
ENSSFOG00015009585	dkc1	85	86.667	ENSPFOG00000018653	dkc1	89	85.088	Poecilia_formosa
ENSSFOG00015009585	dkc1	85	86.667	ENSPLAG00000003272	dkc1	81	85.088	Poecilia_latipinna
ENSSFOG00015009585	dkc1	85	86.667	ENSPMEG00000010413	dkc1	89	85.088	Poecilia_mexicana
ENSSFOG00015009585	dkc1	85	86.207	ENSPREG00000004100	dkc1	85	85.977	Poecilia_reticulata
ENSSFOG00015009585	dkc1	85	81.264	ENSPPYG00000020892	DKC1	87	81.264	Pongo_abelii
ENSSFOG00015009585	dkc1	71	88.705	ENSPCAG00000015034	DKC1	71	88.705	Procavia_capensis
ENSSFOG00015009585	dkc1	89	80.172	ENSPCOG00000026874	DKC1	90	80.172	Propithecus_coquereli
ENSSFOG00015009585	dkc1	89	79.869	ENSPVAG00000009222	DKC1	87	80.909	Pteropus_vampyrus
ENSSFOG00015009585	dkc1	86	84.910	ENSPNYG00000020063	dkc1	88	84.375	Pundamilia_nyererei
ENSSFOG00015009585	dkc1	91	85.961	ENSPNAG00000005780	dkc1	87	86.492	Pygocentrus_nattereri
ENSSFOG00015009585	dkc1	90	76.596	ENSRNOG00000055562	Dkc1	87	78.125	Rattus_norvegicus
ENSSFOG00015009585	dkc1	89	79.957	ENSRBIG00000028457	DKC1	78	79.957	Rhinopithecus_bieti
ENSSFOG00015009585	dkc1	89	79.957	ENSRROG00000044780	DKC1	90	79.957	Rhinopithecus_roxellana
ENSSFOG00015009585	dkc1	78	69.750	YLR175W	-	82	69.652	Saccharomyces_cerevisiae
ENSSFOG00015009585	dkc1	100	75.530	ENSSBOG00000033746	DKC1	99	74.566	Saimiri_boliviensis_boliviensis
ENSSFOG00015009585	dkc1	85	81.507	ENSSHAG00000002463	DKC1	93	80.995	Sarcophilus_harrisii
ENSSFOG00015009585	dkc1	86	87.244	ENSSMAG00000002552	dkc1	88	85.590	Scophthalmus_maximus
ENSSFOG00015009585	dkc1	85	86.697	ENSSDUG00000009963	dkc1	89	84.783	Seriola_dumerili
ENSSFOG00015009585	dkc1	93	81.818	ENSSLDG00000019342	dkc1	90	83.956	Seriola_lalandi_dorsalis
ENSSFOG00015009585	dkc1	85	77.626	ENSSARG00000001822	DKC1	87	78.458	Sorex_araneus
ENSSFOG00015009585	dkc1	84	84.778	ENSSPUG00000018907	DKC1	90	79.281	Sphenodon_punctatus
ENSSFOG00015009585	dkc1	93	81.761	ENSSPAG00000002585	dkc1	82	84.932	Stegastes_partitus
ENSSFOG00015009585	dkc1	82	85.273	ENSSSCG00000012823	DKC1	95	79.870	Sus_scrofa
ENSSFOG00015009585	dkc1	76	86.923	ENSTGUG00000006781	DKC1	91	83.455	Taeniopygia_guttata
ENSSFOG00015009585	dkc1	92	83.298	ENSTRUG00000004413	dkc1	86	86.605	Takifugu_rubripes
ENSSFOG00015009585	dkc1	85	70.362	ENSTNIG00000002582	dkc1	86	70.362	Tetraodon_nigroviridis
ENSSFOG00015009585	dkc1	57	81.271	ENSTBEG00000011262	DKC1	87	78.302	Tupaia_belangeri
ENSSFOG00015009585	dkc1	54	89.130	ENSTTRG00000008089	DKC1	55	89.130	Tursiops_truncatus
ENSSFOG00015009585	dkc1	81	84.783	ENSUAMG00000022721	DKC1	87	84.783	Ursus_americanus
ENSSFOG00015009585	dkc1	81	84.541	ENSUMAG00000016899	DKC1	98	85.037	Ursus_maritimus
ENSSFOG00015009585	dkc1	80	83.855	ENSVVUG00000020734	-	72	83.855	Vulpes_vulpes
ENSSFOG00015009585	dkc1	84	67.972	ENSVVUG00000021671	-	75	70.833	Vulpes_vulpes
ENSSFOG00015009585	dkc1	92	81.663	ENSXETG00000032517	DKC1	96	80.042	Xenopus_tropicalis
ENSSFOG00015009585	dkc1	86	84.703	ENSXCOG00000005498	dkc1	92	85.057	Xiphophorus_couchianus
ENSSFOG00015009585	dkc1	85	85.747	ENSXMAG00000004919	dkc1	90	84.211	Xiphophorus_maculatus