EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSFOG00015009614 (Gene tree)
Gene ID
108929978
Gene Symbol
patl1
Alias
fa11d04|wu:fa11d04|zgc:158239
Full Name
PAT1 homolog 1%2C processing body mRNA decay factor
Gene Type
protein_coding
Species
Scleropages_formosus
Status
putative
Strand
Minus strand
Length
7525 bases
Position
chrKV410907.1:72310-79834
Accession
108929978
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSFOP00015014920PAT1PF09770.98e-1411
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSFOT00015015094-3168XM_018744945ENSSFOP00015014920756 (aa)XP_018600461A0A1W4Z9N8
Gene Model
Click here to download ENSSFOG00015009614's gene model file
Pathways
Pathway IDPathway NameSource
sfm03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015009614's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSFOG00015009614patl15738.344ENSSFOG00015000720patl25540.988
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSFOG00015009614patl15237.406ENSG00000229474PATL29939.011Homo_sapiens
ENSSFOG00015009614patl19946.108ENSG00000166889PATL19944.107Homo_sapiens
ENSSFOG00015009614patl15437.500ENSAPOG00000022988patl25838.287Acanthochromis_polyacanthus
ENSSFOG00015009614patl19486.869ENSAPOG00000021290patl19974.870Acanthochromis_polyacanthus
ENSSFOG00015009614patl19945.694ENSAMEG00000014215PATL19944.778Ailuropoda_melanoleuca
ENSSFOG00015009614patl15536.300ENSAMEG00000014997PATL27537.750Ailuropoda_melanoleuca
ENSSFOG00015009614patl19975.654ENSACIG00000005182patl19974.346Amphilophus_citrinellus
ENSSFOG00015009614patl19473.770ENSAOCG00000021993patl19575.307Amphiprion_ocellaris
ENSSFOG00015009614patl15436.321ENSAOCG00000023738patl25137.028Amphiprion_ocellaris
ENSSFOG00015009614patl15436.342ENSAPEG00000011299patl26137.056Amphiprion_percula
ENSSFOG00015009614patl19587.121ENSAPEG00000021391patl110072.302Amphiprion_percula
ENSSFOG00015009614patl110073.504ENSATEG00000002230patl110072.583Anabas_testudineus
ENSSFOG00015009614patl15434.752ENSATEG00000019567patl26035.606Anabas_testudineus
ENSSFOG00015009614patl15238.958ENSAPLG00000003980PATL26539.851Anas_platyrhynchos
ENSSFOG00015009614patl15846.443ENSAPLG00000013394PATL18947.661Anas_platyrhynchos
ENSSFOG00015009614patl19946.220ENSACAG00000006607PATL19944.512Anolis_carolinensis
ENSSFOG00015009614patl19945.161ENSANAG00000023078PATL19944.593Aotus_nancymaae
ENSSFOG00015009614patl15436.235ENSACLG00000010326patl25337.280Astatotilapia_calliptera
ENSSFOG00015009614patl110070.723ENSACLG00000005144patl110070.411Astatotilapia_calliptera
ENSSFOG00015009614patl110077.992ENSAMXG00000010731patl110079.923Astyanax_mexicanus
ENSSFOG00015009614patl15439.059ENSAMXG00000020293patl25738.693Astyanax_mexicanus
ENSSFOG00015009614patl19946.981ENSBTAG00000005913PATL19945.322Bos_taurus
ENSSFOG00015009614patl19946.350ENSCJAG00000016192PATL19943.864Callithrix_jacchus
ENSSFOG00015009614patl16235.062ENSCJAG00000002379PATL27237.838Callithrix_jacchus
ENSSFOG00015009614patl19945.933ENSCAFG00000007581PATL19945.018Canis_familiaris
ENSSFOG00015009614patl15339.036ENSCAFG00000013629PATL27439.024Canis_familiaris
ENSSFOG00015009614patl19945.988ENSCAFG00020001648PATL110045.192Canis_lupus_dingo
ENSSFOG00015009614patl15339.036ENSCAFG00020022169PATL27339.024Canis_lupus_dingo
ENSSFOG00015009614patl15638.565ENSCHIG00000026665PATL27438.861Capra_hircus
ENSSFOG00015009614patl19945.455ENSCHIG00000025913PATL19944.836Capra_hircus
ENSSFOG00015009614patl110046.554ENSTSYG00000012748PATL19645.865Carlito_syrichta
ENSSFOG00015009614patl19945.998ENSCAPG00000013668PATL19942.321Cavia_aperea
ENSSFOG00015009614patl19944.912ENSCPOG00000006827PATL19941.812Cavia_porcellus
ENSSFOG00015009614patl19945.749ENSCCAG00000023759PATL19943.985Cebus_capucinus
ENSSFOG00015009614patl19945.509ENSCATG00000009629PATL19943.985Cercocebus_atys
ENSSFOG00015009614patl15335.897ENSCLAG00000014407PATL27337.662Chinchilla_lanigera
ENSSFOG00015009614patl19846.070ENSCLAG00000003427PATL19643.781Chinchilla_lanigera
ENSSFOG00015009614patl17848.702ENSCSAG00000006095PATL19346.494Chlorocebus_sabaeus
ENSSFOG00015009614patl16458.242ENSCHOG00000001611PATL18158.242Choloepus_hoffmanni
ENSSFOG00015009614patl15540.094ENSCPBG00000006150PATL26040.648Chrysemys_picta_bellii
ENSSFOG00015009614patl15634.475ENSCING00000021535-7832.759Ciona_intestinalis
ENSSFOG00015009614patl19945.444ENSCANG00000039197PATL19944.039Colobus_angolensis_palliatus
ENSSFOG00015009614patl15238.404ENSCANG00000013856PATL27338.462Colobus_angolensis_palliatus
ENSSFOG00015009614patl15435.952ENSCGRG00001010801Patl27436.772Cricetulus_griseus_chok1gshd
ENSSFOG00015009614patl19946.731ENSCGRG00001024927Patl19944.593Cricetulus_griseus_chok1gshd
ENSSFOG00015009614patl15435.952ENSCGRG00000013007Patl27436.772Cricetulus_griseus_crigri
ENSSFOG00015009614patl15435.154ENSCSEG00000009438patl25736.041Cynoglossus_semilaevis
ENSSFOG00015009614patl110069.643ENSCSEG00000008261patl19676.106Cynoglossus_semilaevis
ENSSFOG00015009614patl15434.772ENSCVAG00000016203patl26035.279Cyprinodon_variegatus
ENSSFOG00015009614patl19478.061ENSCVAG00000006664patl110063.111Cyprinodon_variegatus
ENSSFOG00015009614patl15440.094ENSDARG00000089567patl25540.909Danio_rerio
ENSSFOG00015009614patl110077.548ENSDARG00000017423patl110077.032Danio_rerio
ENSSFOG00015009614patl19842.927ENSDNOG00000038865PATL19947.523Dasypus_novemcinctus
ENSSFOG00015009614patl19945.269ENSDORG00000000237Patl19943.499Dipodomys_ordii
ENSSFOG00015009614patl19945.923ENSEASG00005007963PATL19945.891Equus_asinus_asinus
ENSSFOG00015009614patl15436.792ENSELUG00000023244patl25438.035Esox_lucius
ENSSFOG00015009614patl110072.953ENSELUG00000024249patl110073.940Esox_lucius
ENSSFOG00015009614patl19946.163ENSFCAG00000015573PATL19944.952Felis_catus
ENSSFOG00015009614patl15537.559ENSFCAG00000027170PATL27338.806Felis_catus
ENSSFOG00015009614patl16136.421ENSFALG00000009768PATL25537.975Ficedula_albicollis
ENSSFOG00015009614patl19947.975ENSFALG00000012150PATL19645.295Ficedula_albicollis
ENSSFOG00015009614patl19845.264ENSFDAG00000016128PATL19643.182Fukomys_damarensis
ENSSFOG00015009614patl19971.712ENSFHEG00000017790patl110071.252Fundulus_heteroclitus
ENSSFOG00015009614patl15235.556ENSGMOG00000005666patl210036.010Gadus_morhua
ENSSFOG00015009614patl15237.990ENSGALG00000002167PATL25138.107Gallus_gallus
ENSSFOG00015009614patl19947.555ENSGALG00000042641PATL110044.970Gallus_gallus
ENSSFOG00015009614patl110073.259ENSGAFG00000006508patl110072.354Gambusia_affinis
ENSSFOG00015009614patl15437.352ENSGAFG00000019344patl25538.384Gambusia_affinis
ENSSFOG00015009614patl19969.114ENSGACG00000016448patl19969.835Gasterosteus_aculeatus
ENSSFOG00015009614patl19947.509ENSGAGG00000004461PATL19946.517Gopherus_agassizii
ENSSFOG00015009614patl15237.406ENSGGOG00000025923PATL27337.871Gorilla_gorilla
ENSSFOG00015009614patl19945.749ENSGGOG00000004335PATL110044.981Gorilla_gorilla
ENSSFOG00015009614patl15436.493ENSHBUG00000005929patl26036.962Haplochromis_burtoni
ENSSFOG00015009614patl110070.843ENSHBUG00000005365patl110070.531Haplochromis_burtoni
ENSSFOG00015009614patl19945.868ENSHGLG00000018173PATL19942.049Heterocephalus_glaber_female
ENSSFOG00015009614patl19845.410ENSHGLG00100003453PATL19640.705Heterocephalus_glaber_male
ENSSFOG00015009614patl110068.644ENSHCOG00000001898patl110068.811Hippocampus_comes
ENSSFOG00015009614patl15435.915ENSHCOG00000016754patl25436.591Hippocampus_comes
ENSSFOG00015009614patl15437.089ENSSTOG00000033848PATL27238.060Ictidomys_tridecemlineatus
ENSSFOG00015009614patl19845.752ENSSTOG00000013764PATL19643.781Ictidomys_tridecemlineatus
ENSSFOG00015009614patl19845.949ENSJJAG00000010135Patl19643.703Jaculus_jaculus
ENSSFOG00015009614patl110070.688ENSKMAG00000020848patl110071.291Kryptolebias_marmoratus
ENSSFOG00015009614patl15136.500ENSKMAG00000021275patl25436.500Kryptolebias_marmoratus
ENSSFOG00015009614patl15437.264ENSLBEG00000022344patl25337.783Labrus_bergylta
ENSSFOG00015009614patl110072.792ENSLBEG00000023617patl110072.443Labrus_bergylta
ENSSFOG00015009614patl18276.923ENSLACG00000004640PATL18983.871Latimeria_chalumnae
ENSSFOG00015009614patl110067.547ENSLOCG00000000717patl110066.076Lepisosteus_oculatus
ENSSFOG00015009614patl19946.228ENSLAFG00000015161PATL19945.377Loxodonta_africana
ENSSFOG00015009614patl19945.509ENSMFAG00000040851PATL19943.985Macaca_fascicularis
ENSSFOG00015009614patl19945.509ENSMMUG00000017287PATL19943.985Macaca_mulatta
ENSSFOG00015009614patl19945.509ENSMNEG00000038692PATL19943.985Macaca_nemestrina
ENSSFOG00015009614patl19945.509ENSMLEG00000030044PATL19943.985Mandrillus_leucophaeus
ENSSFOG00015009614patl19973.403ENSMAMG00000003950patl19973.205Mastacembelus_armatus
ENSSFOG00015009614patl15435.407ENSMAMG00000013327patl26036.041Mastacembelus_armatus
ENSSFOG00015009614patl110070.723ENSMZEG00005013404patl110070.411Maylandia_zebra
ENSSFOG00015009614patl15436.235ENSMZEG00005014292patl25337.280Maylandia_zebra
ENSSFOG00015009614patl15239.364ENSMGAG00000001309PATL26539.364Meleagris_gallopavo
ENSSFOG00015009614patl19246.850ENSMGAG00000003406PATL19640.291Meleagris_gallopavo
ENSSFOG00015009614patl19440.808ENSMAUG00000012059Patl19636.213Mesocricetus_auratus
ENSSFOG00015009614patl16034.292ENSMAUG00000001008Patl27636.591Mesocricetus_auratus
ENSSFOG00015009614patl19944.093ENSMICG00000004172PATL19844.348Microcebus_murinus
ENSSFOG00015009614patl19946.852ENSMOCG00000010087Patl19944.471Microtus_ochrogaster
ENSSFOG00015009614patl15936.052ENSMOCG00000015367Patl27337.437Microtus_ochrogaster
ENSSFOG00015009614patl18376.042ENSMMOG00000013711patl19774.435Mola_mola
ENSSFOG00015009614patl15432.930ENSMMOG00000001299patl25933.419Mola_mola
ENSSFOG00015009614patl15637.991ENSMODG00000017690PATL27138.902Monodelphis_domestica
ENSSFOG00015009614patl19472.045ENSMALG00000018706patl110071.862Monopterus_albus
ENSSFOG00015009614patl15434.679ENSMALG00000008131patl25135.533Monopterus_albus
ENSSFOG00015009614patl19945.913MGP_CAROLIEiJ_G0022739Patl19944.146Mus_caroli
ENSSFOG00015009614patl19946.467ENSMUSG00000046139Patl19944.593Mus_musculus
ENSSFOG00015009614patl19946.707MGP_PahariEiJ_G0014233Patl19944.714Mus_pahari
ENSSFOG00015009614patl19946.467MGP_SPRETEiJ_G0023652Patl19944.593Mus_spretus
ENSSFOG00015009614patl19946.498ENSMPUG00000014607PATL19944.898Mustela_putorius_furo
ENSSFOG00015009614patl19946.764ENSMLUG00000011169PATL19946.433Myotis_lucifugus
ENSSFOG00015009614patl19946.416ENSNGAG00000003682Patl19944.053Nannospalax_galili
ENSSFOG00015009614patl16485.455ENSNBRG00000015372patl19350.071Neolamprologus_brichardi
ENSSFOG00015009614patl15436.407ENSNBRG00000011745patl25737.215Neolamprologus_brichardi
ENSSFOG00015009614patl19944.957ENSNLEG00000013081PATL110045.105Nomascus_leucogenys
ENSSFOG00015009614patl15237.811ENSNLEG00000005673PATL27337.871Nomascus_leucogenys
ENSSFOG00015009614patl16354.518ENSMEUG00000009391PATL17454.518Notamacropus_eugenii
ENSSFOG00015009614patl16753.904ENSOPRG00000007963PATL17853.904Ochotona_princeps
ENSSFOG00015009614patl17343.902ENSODEG00000001792PATL18543.902Octodon_degus
ENSSFOG00015009614patl110070.397ENSONIG00000004170patl110070.823Oreochromis_niloticus
ENSSFOG00015009614patl15436.385ENSONIG00000011519patl25337.437Oreochromis_niloticus
ENSSFOG00015009614patl15836.087ENSOANG00000001538-8537.662Ornithorhynchus_anatinus
ENSSFOG00015009614patl19946.108ENSOCUG00000002156PATL19944.228Oryctolagus_cuniculus
ENSSFOG00015009614patl15536.175ENSOCUG00000006339PATL27537.093Oryctolagus_cuniculus
ENSSFOG00015009614patl15435.915ENSORLG00000005780patl25436.842Oryzias_latipes
ENSSFOG00015009614patl15435.915ENSORLG00020016506patl25236.842Oryzias_latipes_hni
ENSSFOG00015009614patl17876.846ENSORLG00015022240patl17776.846Oryzias_latipes_hsok
ENSSFOG00015009614patl15435.915ENSORLG00015014500patl25436.842Oryzias_latipes_hsok
ENSSFOG00015009614patl15136.111ENSOMEG00000021628patl25636.111Oryzias_melastigma
ENSSFOG00015009614patl19945.868ENSOGAG00000004351PATL19944.350Otolemur_garnettii
ENSSFOG00015009614patl15137.531ENSOGAG00000004709PATL27237.531Otolemur_garnettii
ENSSFOG00015009614patl15436.636ENSOARG00000003762PATL27237.437Ovis_aries
ENSSFOG00015009614patl19845.652ENSOARG00000012005PATL19244.962Ovis_aries
ENSSFOG00015009614patl19945.749ENSPPAG00000034275PATL19944.926Pan_paniscus
ENSSFOG00015009614patl15237.406ENSPPAG00000007221PATL27237.871Pan_paniscus
ENSSFOG00015009614patl15536.854ENSPPRG00000004279PATL27338.060Panthera_pardus
ENSSFOG00015009614patl19845.707ENSPPRG00000020639PATL19644.832Panthera_pardus
ENSSFOG00015009614patl15536.854ENSPTIG00000018964PATL27338.060Panthera_tigris_altaica
ENSSFOG00015009614patl19945.868ENSPTIG00000019298PATL19944.952Panthera_tigris_altaica
ENSSFOG00015009614patl19942.683ENSPTRG00000003697PATL110043.618Pan_troglodytes
ENSSFOG00015009614patl15237.406ENSPTRG00000041536PATL27237.871Pan_troglodytes
ENSSFOG00015009614patl19945.509ENSPANG00000035620PATL19943.985Papio_anubis
ENSSFOG00015009614patl110083.684ENSPKIG00000016224patl110082.552Paramormyrops_kingsleyae
ENSSFOG00015009614patl15239.506ENSPKIG00000016887patl25539.506Paramormyrops_kingsleyae
ENSSFOG00015009614patl19948.665ENSPSIG00000016206PATL19543.990Pelodiscus_sinensis
ENSSFOG00015009614patl15237.192ENSPSIG00000017690PATL29736.709Pelodiscus_sinensis
ENSSFOG00015009614patl110074.968ENSPMGG00000002644patl110074.651Periophthalmus_magnuspinnatus
ENSSFOG00015009614patl15434.368ENSPMGG00000014550patl26234.937Periophthalmus_magnuspinnatus
ENSSFOG00015009614patl15136.186ENSPEMG00000016509Patl27137.403Peromyscus_maniculatus_bairdii
ENSSFOG00015009614patl19946.731ENSPEMG00000014215Patl19944.350Peromyscus_maniculatus_bairdii
ENSSFOG00015009614patl19947.509ENSPCIG00000010852PATL19945.499Phascolarctos_cinereus
ENSSFOG00015009614patl15337.678ENSPCIG00000018256PATL27738.191Phascolarctos_cinereus
ENSSFOG00015009614patl15437.116ENSPFOG00000007305patl25438.131Poecilia_formosa
ENSSFOG00015009614patl110074.840ENSPFOG00000007768patl110073.299Poecilia_formosa
ENSSFOG00015009614patl15437.116ENSPLAG00000020713patl25438.131Poecilia_latipinna
ENSSFOG00015009614patl110072.761ENSPLAG00000018465patl110071.891Poecilia_latipinna
ENSSFOG00015009614patl15437.116ENSPMEG00000018942patl25438.131Poecilia_mexicana
ENSSFOG00015009614patl110073.350ENSPMEG00000006555patl110071.856Poecilia_mexicana
ENSSFOG00015009614patl18971.529ENSPREG00000003874patl19570.547Poecilia_reticulata
ENSSFOG00015009614patl19945.988ENSPPYG00000003230PATL19944.228Pongo_abelii
ENSSFOG00015009614patl19945.629ENSPCOG00000020770PATL19945.902Propithecus_coquereli
ENSSFOG00015009614patl15238.424ENSPCOG00000000295PATL29940.162Propithecus_coquereli
ENSSFOG00015009614patl17847.077ENSPVAG00000015239PATL19946.533Pteropus_vampyrus
ENSSFOG00015009614patl18689.130ENSPNYG00000018936patl19688.889Pundamilia_nyererei
ENSSFOG00015009614patl15436.019ENSPNYG00000017381patl26036.709Pundamilia_nyererei
ENSSFOG00015009614patl110079.795ENSPNAG00000017907patl110079.253Pygocentrus_nattereri
ENSSFOG00015009614patl15637.753ENSPNAG00000002315patl25738.750Pygocentrus_nattereri
ENSSFOG00015009614patl19946.108ENSRNOG00000021052Patl19944.228Rattus_norvegicus
ENSSFOG00015009614patl19940.553ENSRBIG00000032263PATL19938.273Rhinopithecus_bieti
ENSSFOG00015009614patl19945.509ENSRROG00000032861PATL19943.985Rhinopithecus_roxellana
ENSSFOG00015009614patl19945.868ENSSBOG00000025195PATL19945.161Saimiri_boliviensis_boliviensis
ENSSFOG00015009614patl19947.394ENSSHAG00000004309PATL19944.048Sarcophilus_harrisii
ENSSFOG00015009614patl110071.786ENSSMAG00000009482patl110069.836Scophthalmus_maximus
ENSSFOG00015009614patl15436.364ENSSMAG00000017262patl26336.802Scophthalmus_maximus
ENSSFOG00015009614patl15436.170ENSSDUG00000022927patl25436.869Seriola_dumerili
ENSSFOG00015009614patl110071.819ENSSDUG00000005362patl110071.700Seriola_dumerili
ENSSFOG00015009614patl110071.429ENSSLDG00000019146patl110071.310Seriola_lalandi_dorsalis
ENSSFOG00015009614patl15436.817ENSSLDG00000017922patl25937.280Seriola_lalandi_dorsalis
ENSSFOG00015009614patl16150.286ENSSARG00000009600PATL15455.635Sorex_araneus
ENSSFOG00015009614patl19948.166ENSSPUG00000009453PATL19947.188Sphenodon_punctatus
ENSSFOG00015009614patl15435.885ENSSPAG00000004784patl26136.111Stegastes_partitus
ENSSFOG00015009614patl15287.121ENSSPAG00000003187patl19974.512Stegastes_partitus
ENSSFOG00015009614patl19945.813ENSSSCG00000013124PATL19944.957Sus_scrofa
ENSSFOG00015009614patl19947.922ENSTGUG00000006222PATL19644.819Taeniopygia_guttata
ENSSFOG00015009614patl15035.623ENSTGUG00000004619-9936.802Taeniopygia_guttata
ENSSFOG00015009614patl15436.038ENSTRUG00000005647patl25636.735Takifugu_rubripes
ENSSFOG00015009614patl110068.140ENSTRUG00000000709patl110067.318Takifugu_rubripes
ENSSFOG00015009614patl18942.181ENSTBEG00000000796PATL16541.216Tupaia_belangeri
ENSSFOG00015009614patl17153.401ENSTTRG00000009389PATL18353.401Tursiops_truncatus
ENSSFOG00015009614patl15136.842ENSUAMG00000018533PATL27137.065Ursus_americanus
ENSSFOG00015009614patl15137.093ENSUMAG00000007738PATL27137.313Ursus_maritimus
ENSSFOG00015009614patl19845.586ENSUMAG00000018634PATL19944.516Ursus_maritimus
ENSSFOG00015009614patl15538.605ENSVVUG00000011576PATL27439.024Vulpes_vulpes
ENSSFOG00015009614patl19945.848ENSVVUG00000016668PATL19945.647Vulpes_vulpes
ENSSFOG00015009614patl15236.973ENSXETG00000014167patl26636.935Xenopus_tropicalis
ENSSFOG00015009614patl17777.712ENSXCOG00000010808patl110077.668Xiphophorus_couchianus
ENSSFOG00015009614patl110072.739ENSXMAG00000013834patl110071.836Xiphophorus_maculatus
ENSSFOG00015009614patl15437.116ENSXMAG00000018464patl25438.131Xiphophorus_maculatus

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