EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015009773 (Gene tree)
Gene ID: 108928809
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 23267 bases
Position: chrKV410893.1:965284-988550
Accession: 108928809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015015149	MMR_HSR1	PF01926.23	1.5e-08	1	1
ENSSFOP00015015165	MMR_HSR1	PF01926.23	1.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015015329	-	3751	XM_018742963	ENSSFOP00015015149	484 (aa)	XP_018598479	A0A1W4Z3W9
ENSSFOT00015015345	-	1407	-	ENSSFOP00015015165	468 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015009773's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015009773's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015009773	srl	87	30.488	ENSSFOG00015006481	-	74	30.488
ENSSFOG00015009773	srl	86	31.915	ENSSFOG00015006753	ehd2a	94	34.615
ENSSFOG00015009773	srl	87	32.282	ENSSFOG00015023056	ehd2	74	32.282
ENSSFOG00015009773	srl	77	32.782	ENSSFOG00015019587	EHD1	71	32.964
ENSSFOG00015009773	srl	79	32.976	ENSSFOG00015014110	ehd3	70	33.247

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015009773	srl	97	83.260	ENSG00000185739	SRL	99	84.419	Homo_sapiens
ENSSFOG00015009773	srl	94	77.376	ENSAPOG00000012432	SRL	98	77.376	Acanthochromis_polyacanthus
ENSSFOG00015009773	srl	99	91.026	ENSAPOG00000018093	srl	99	93.197	Acanthochromis_polyacanthus
ENSSFOG00015009773	srl	98	82.713	ENSAMEG00000010862	SRL	50	84.163	Ailuropoda_melanoleuca
ENSSFOG00015009773	srl	96	93.348	ENSACIG00000015799	srl	98	93.919	Amphilophus_citrinellus
ENSSFOG00015009773	srl	95	76.854	ENSACIG00000015419	SRL	99	76.854	Amphilophus_citrinellus
ENSSFOG00015009773	srl	93	93.779	ENSAOCG00000007574	srl	100	93.779	Amphiprion_ocellaris
ENSSFOG00015009773	srl	98	75.764	ENSAOCG00000017049	SRL	96	77.878	Amphiprion_ocellaris
ENSSFOG00015009773	srl	98	71.991	ENSAPEG00000006533	SRL	96	74.944	Amphiprion_percula
ENSSFOG00015009773	srl	100	91.529	ENSAPEG00000006911	srl	100	91.529	Amphiprion_percula
ENSSFOG00015009773	srl	94	76.264	ENSATEG00000009643	SRL	52	76.484	Anabas_testudineus
ENSSFOG00015009773	srl	100	91.736	ENSATEG00000024315	srl	100	91.736	Anabas_testudineus
ENSSFOG00015009773	srl	94	85.430	ENSACAG00000016380	SRL	89	82.582	Anolis_carolinensis
ENSSFOG00015009773	srl	100	91.322	ENSACLG00000027685	srl	98	93.483	Astatotilapia_calliptera
ENSSFOG00015009773	srl	94	75.165	ENSACLG00000024674	SRL	57	75.385	Astatotilapia_calliptera
ENSSFOG00015009773	srl	99	92.060	ENSAMXG00000018789	srl	92	91.925	Astyanax_mexicanus
ENSSFOG00015009773	srl	90	77.327	ENSAMXG00000038693	SRL	100	73.510	Astyanax_mexicanus
ENSSFOG00015009773	srl	97	82.965	ENSBTAG00000001078	SRL	56	84.354	Bos_taurus
ENSSFOG00015009773	srl	94	84.163	ENSCJAG00000019750	SRL	100	78.969	Callithrix_jacchus
ENSSFOG00015009773	srl	98	81.917	ENSCAFG00000019233	SRL	82	84.163	Canis_familiaris
ENSSFOG00015009773	srl	96	83.519	ENSCAFG00020025024	SRL	54	84.163	Canis_lupus_dingo
ENSSFOG00015009773	srl	97	82.895	ENSCHIG00000017927	SRL	55	84.354	Capra_hircus
ENSSFOG00015009773	srl	97	83.700	ENSTSYG00000007919	SRL	99	85.116	Carlito_syrichta
ENSSFOG00015009773	srl	97	82.819	ENSCPOG00000012643	SRL	100	78.512	Cavia_porcellus
ENSSFOG00015009773	srl	94	78.733	ENSCCAG00000032646	SRL	100	85.224	Cebus_capucinus
ENSSFOG00015009773	srl	97	83.260	ENSCATG00000032227	-	100	79.175	Cercocebus_atys
ENSSFOG00015009773	srl	97	83.480	ENSCLAG00000016242	SRL	100	79.132	Chinchilla_lanigera
ENSSFOG00015009773	srl	82	86.234	ENSCHOG00000001618	SRL	52	86.234	Choloepus_hoffmanni
ENSSFOG00015009773	srl	96	87.306	ENSCPBG00000026371	SRL	99	81.988	Chrysemys_picta_bellii
ENSSFOG00015009773	srl	95	59.041	ENSCING00000005231	-	93	62.110	Ciona_intestinalis
ENSSFOG00015009773	srl	97	83.260	ENSCANG00000035872	SRL	99	84.419	Colobus_angolensis_palliatus
ENSSFOG00015009773	srl	97	83.480	ENSCGRG00001016630	Srl	100	78.926	Cricetulus_griseus_chok1gshd
ENSSFOG00015009773	srl	97	83.480	ENSCGRG00000005458	Srl	100	78.926	Cricetulus_griseus_crigri
ENSSFOG00015009773	srl	100	90.083	ENSCSEG00000016151	srl	100	90.083	Cynoglossus_semilaevis
ENSSFOG00015009773	srl	98	73.319	ENSCSEG00000011866	SRL	94	70.894	Cynoglossus_semilaevis
ENSSFOG00015009773	srl	96	75.484	ENSCVAG00000022465	SRL	60	76.432	Cyprinodon_variegatus
ENSSFOG00015009773	srl	100	89.669	ENSCVAG00000003513	srl	100	89.669	Cyprinodon_variegatus
ENSSFOG00015009773	srl	100	90.702	ENSDARG00000104587	srl	100	90.702	Danio_rerio
ENSSFOG00015009773	srl	81	77.865	ENSDARG00000112959	CABZ01072309.1	100	77.865	Danio_rerio
ENSSFOG00015009773	srl	96	83.964	ENSDNOG00000011643	SRL	53	84.615	Dasypus_novemcinctus
ENSSFOG00015009773	srl	97	82.675	ENSDORG00000014807	Srl	100	78.926	Dipodomys_ordii
ENSSFOG00015009773	srl	78	66.667	ENSEBUG00000015937	srl	95	66.667	Eptatretus_burgeri
ENSSFOG00015009773	srl	97	84.106	ENSEASG00005000942	SRL	53	85.488	Equus_asinus_asinus
ENSSFOG00015009773	srl	99	82.303	ENSECAG00000024219	SRL	99	80.579	Equus_caballus
ENSSFOG00015009773	srl	100	87.680	ENSELUG00000015616	srl	100	87.680	Esox_lucius
ENSSFOG00015009773	srl	100	79.175	ENSFCAG00000022075	SRL	100	78.969	Felis_catus
ENSSFOG00015009773	srl	97	82.522	ENSFALG00000004328	SRL	63	84.091	Ficedula_albicollis
ENSSFOG00015009773	srl	97	83.480	ENSFDAG00000006199	SRL	100	79.339	Fukomys_damarensis
ENSSFOG00015009773	srl	100	71.084	ENSFHEG00000011854	SRL	99	76.351	Fundulus_heteroclitus
ENSSFOG00015009773	srl	100	88.866	ENSFHEG00000011239	srl	100	88.636	Fundulus_heteroclitus
ENSSFOG00015009773	srl	94	90.066	ENSGMOG00000014954	srl	99	90.066	Gadus_morhua
ENSSFOG00015009773	srl	97	83.114	ENSGALG00000038884	SRL	98	80.922	Gallus_gallus
ENSSFOG00015009773	srl	96	77.506	ENSGAFG00000016984	SRL	99	78.153	Gambusia_affinis
ENSSFOG00015009773	srl	100	89.485	ENSGAFG00000000010	srl	100	89.256	Gambusia_affinis
ENSSFOG00015009773	srl	94	92.088	ENSGACG00000011332	srl	100	92.088	Gasterosteus_aculeatus
ENSSFOG00015009773	srl	97	83.260	ENSGGOG00000011312	-	100	79.175	Gorilla_gorilla
ENSSFOG00015009773	srl	94	75.604	ENSHBUG00000015710	SRL	57	75.824	Haplochromis_burtoni
ENSSFOG00015009773	srl	100	91.322	ENSHBUG00000007581	srl	98	93.483	Haplochromis_burtoni
ENSSFOG00015009773	srl	97	83.700	ENSHGLG00000015271	SRL	100	79.339	Heterocephalus_glaber_female
ENSSFOG00015009773	srl	97	83.700	ENSHGLG00100019378	SRL	100	79.339	Heterocephalus_glaber_male
ENSSFOG00015009773	srl	94	75.551	ENSHCOG00000001012	SRL	50	75.551	Hippocampus_comes
ENSSFOG00015009773	srl	100	90.515	ENSHCOG00000008687	srl	99	92.584	Hippocampus_comes
ENSSFOG00015009773	srl	93	69.495	ENSIPUG00000011609	SRL	95	69.495	Ictalurus_punctatus
ENSSFOG00015009773	srl	100	90.289	ENSIPUG00000012513	srl	100	90.289	Ictalurus_punctatus
ENSSFOG00015009773	srl	97	82.819	ENSSTOG00000021151	-	100	78.512	Ictidomys_tridecemlineatus
ENSSFOG00015009773	srl	99	80.932	ENSJJAG00000016400	Srl	100	78.926	Jaculus_jaculus
ENSSFOG00015009773	srl	98	90.295	ENSKMAG00000014115	srl	93	93.349	Kryptolebias_marmoratus
ENSSFOG00015009773	srl	94	78.231	ENSKMAG00000019537	SRL	100	78.231	Kryptolebias_marmoratus
ENSSFOG00015009773	srl	100	89.256	ENSLBEG00000026643	srl	100	89.256	Labrus_bergylta
ENSSFOG00015009773	srl	98	75.109	ENSLBEG00000013811	SRL	95	77.149	Labrus_bergylta
ENSSFOG00015009773	srl	100	83.058	ENSLACG00000002825	SRL	98	85.294	Latimeria_chalumnae
ENSSFOG00015009773	srl	99	88.627	ENSLOCG00000002644	srl	99	88.627	Lepisosteus_oculatus
ENSSFOG00015009773	srl	96	82.851	ENSLAFG00000006329	SRL	50	83.484	Loxodonta_africana
ENSSFOG00015009773	srl	92	84.419	ENSMFAG00000037383	SRL	99	84.419	Macaca_fascicularis
ENSSFOG00015009773	srl	98	82.932	ENSMNEG00000019236	-	97	82.932	Macaca_nemestrina
ENSSFOG00015009773	srl	97	76.432	ENSMLEG00000032156	SRL	100	72.371	Mandrillus_leucophaeus
ENSSFOG00015009773	srl	94	76.872	ENSMAMG00000013756	SRL	53	77.093	Mastacembelus_armatus
ENSSFOG00015009773	srl	95	93.694	ENSMAMG00000023322	srl	94	93.708	Mastacembelus_armatus
ENSSFOG00015009773	srl	100	91.322	ENSMZEG00005004548	srl	98	93.483	Maylandia_zebra
ENSSFOG00015009773	srl	94	75.385	ENSMZEG00005004010	SRL	57	75.604	Maylandia_zebra
ENSSFOG00015009773	srl	97	82.599	ENSMGAG00000009342	SRL	92	87.397	Meleagris_gallopavo
ENSSFOG00015009773	srl	98	81.957	ENSMICG00000032307	SRL	100	78.969	Microcebus_murinus
ENSSFOG00015009773	srl	97	82.819	ENSMOCG00000008208	Srl	100	78.306	Microtus_ochrogaster
ENSSFOG00015009773	srl	96	92.444	ENSMMOG00000013970	srl	99	93.034	Mola_mola
ENSSFOG00015009773	srl	94	75.658	ENSMMOG00000021572	SRL	99	75.381	Mola_mola
ENSSFOG00015009773	srl	97	82.743	ENSMODG00000016380	-	50	84.127	Monodelphis_domestica
ENSSFOG00015009773	srl	90	78.520	ENSMALG00000000670	SRL	98	78.520	Monopterus_albus
ENSSFOG00015009773	srl	97	92.308	ENSMALG00000005039	srl	98	93.679	Monopterus_albus
ENSSFOG00015009773	srl	97	83.444	MGP_CAROLIEiJ_G0020400	Srl	100	79.339	Mus_caroli
ENSSFOG00015009773	srl	97	83.444	ENSMUSG00000022519	Srl	100	79.339	Mus_musculus
ENSSFOG00015009773	srl	97	83.444	MGP_SPRETEiJ_G0021294	Srl	100	79.339	Mus_spretus
ENSSFOG00015009773	srl	97	82.781	ENSMPUG00000015025	SRL	54	84.163	Mustela_putorius_furo
ENSSFOG00015009773	srl	97	83.480	ENSMLUG00000030733	SRL	56	85.068	Myotis_lucifugus
ENSSFOG00015009773	srl	97	83.700	ENSNGAG00000019741	Srl	100	79.339	Nannospalax_galili
ENSSFOG00015009773	srl	99	91.106	ENSNBRG00000023775	srl	100	88.636	Neolamprologus_brichardi
ENSSFOG00015009773	srl	94	75.604	ENSNBRG00000002422	SRL	57	75.824	Neolamprologus_brichardi
ENSSFOG00015009773	srl	97	77.753	ENSNLEG00000029051	SRL	100	73.402	Nomascus_leucogenys
ENSSFOG00015009773	srl	97	77.093	ENSOPRG00000000477	-	52	78.054	Ochotona_princeps
ENSSFOG00015009773	srl	97	83.480	ENSODEG00000013256	SRL	100	78.926	Octodon_degus
ENSSFOG00015009773	srl	100	91.529	ENSONIG00000005192	srl	100	91.529	Oreochromis_niloticus
ENSSFOG00015009773	srl	100	90.702	ENSORLG00000008291	srl	97	90.702	Oryzias_latipes
ENSSFOG00015009773	srl	95	76.286	ENSORLG00000015064	SRL	97	76.286	Oryzias_latipes
ENSSFOG00015009773	srl	100	90.702	ENSORLG00020019784	srl	85	90.702	Oryzias_latipes_hni
ENSSFOG00015009773	srl	95	76.510	ENSORLG00020018173	SRL	97	76.126	Oryzias_latipes_hni
ENSSFOG00015009773	srl	100	90.289	ENSORLG00015009342	srl	97	90.289	Oryzias_latipes_hsok
ENSSFOG00015009773	srl	95	76.126	ENSORLG00015019063	SRL	97	76.126	Oryzias_latipes_hsok
ENSSFOG00015009773	srl	100	90.496	ENSOMEG00000010006	srl	98	93.182	Oryzias_melastigma
ENSSFOG00015009773	srl	96	73.753	ENSOMEG00000005682	SRL	53	74.398	Oryzias_melastigma
ENSSFOG00015009773	srl	97	82.561	ENSOGAG00000029266	SRL	54	83.559	Otolemur_garnettii
ENSSFOG00015009773	srl	97	82.895	ENSOARG00000003074	SRL	55	84.354	Ovis_aries
ENSSFOG00015009773	srl	99	82.213	ENSPPAG00000024919	-	99	84.419	Pan_paniscus
ENSSFOG00015009773	srl	100	79.175	ENSPPRG00000010274	SRL	99	84.419	Panthera_pardus
ENSSFOG00015009773	srl	100	79.175	ENSPTIG00000015162	SRL	99	84.419	Panthera_tigris_altaica
ENSSFOG00015009773	srl	99	82.213	ENSPTRG00000007712	SRL	99	84.419	Pan_troglodytes
ENSSFOG00015009773	srl	98	83.151	ENSPANG00000013804	SRL	98	83.151	Papio_anubis
ENSSFOG00015009773	srl	99	80.043	ENSPKIG00000024974	SRL	93	80.043	Paramormyrops_kingsleyae
ENSSFOG00015009773	srl	100	95.052	ENSPKIG00000006405	srl	100	95.052	Paramormyrops_kingsleyae
ENSSFOG00015009773	srl	95	75.847	ENSPMGG00000023505	-	100	75.847	Periophthalmus_magnuspinnatus
ENSSFOG00015009773	srl	99	89.417	ENSPMGG00000021081	srl	96	91.910	Periophthalmus_magnuspinnatus
ENSSFOG00015009773	srl	97	82.819	ENSPEMG00000015842	Srl	100	78.512	Peromyscus_maniculatus_bairdii
ENSSFOG00015009773	srl	89	68.276	ENSPMAG00000004786	srl	99	68.276	Petromyzon_marinus
ENSSFOG00015009773	srl	96	82.927	ENSPCIG00000012128	SRL	96	84.127	Phascolarctos_cinereus
ENSSFOG00015009773	srl	100	89.278	ENSPFOG00000011408	srl	98	88.333	Poecilia_formosa
ENSSFOG00015009773	srl	99	89.201	ENSPLAG00000008017	srl	96	91.667	Poecilia_latipinna
ENSSFOG00015009773	srl	96	75.947	ENSPLAG00000002932	SRL	99	76.577	Poecilia_latipinna
ENSSFOG00015009773	srl	99	89.201	ENSPMEG00000006745	srl	96	91.667	Poecilia_mexicana
ENSSFOG00015009773	srl	96	74.298	ENSPMEG00000005890	SRL	60	74.836	Poecilia_mexicana
ENSSFOG00015009773	srl	96	77.060	ENSPREG00000000315	SRL	99	77.477	Poecilia_reticulata
ENSSFOG00015009773	srl	100	89.485	ENSPREG00000007751	srl	98	91.892	Poecilia_reticulata
ENSSFOG00015009773	srl	90	85.680	ENSPPYG00000007053	SRL	98	85.680	Pongo_abelii
ENSSFOG00015009773	srl	97	83.002	ENSPCAG00000003378	-	50	84.127	Procavia_capensis
ENSSFOG00015009773	srl	97	83.260	ENSPCOG00000023135	SRL	99	84.884	Propithecus_coquereli
ENSSFOG00015009773	srl	97	83.002	ENSPVAG00000006586	SRL	54	84.389	Pteropus_vampyrus
ENSSFOG00015009773	srl	94	75.385	ENSPNYG00000003423	SRL	57	75.604	Pundamilia_nyererei
ENSSFOG00015009773	srl	100	91.529	ENSPNYG00000001200	srl	98	93.708	Pundamilia_nyererei
ENSSFOG00015009773	srl	94	76.417	ENSPNAG00000007361	-	91	76.417	Pygocentrus_nattereri
ENSSFOG00015009773	srl	100	91.322	ENSPNAG00000023106	srl	100	91.322	Pygocentrus_nattereri
ENSSFOG00015009773	srl	94	84.163	ENSSBOG00000029273	SRL	100	78.969	Saimiri_boliviensis_boliviensis
ENSSFOG00015009773	srl	94	76.368	ENSSMAG00000002232	SRL	50	76.484	Scophthalmus_maximus
ENSSFOG00015009773	srl	100	89.876	ENSSMAG00000016274	srl	100	89.876	Scophthalmus_maximus
ENSSFOG00015009773	srl	95	78.000	ENSSDUG00000009161	SRL	99	78.000	Seriola_dumerili
ENSSFOG00015009773	srl	96	91.410	ENSSDUG00000010808	srl	98	92.793	Seriola_dumerili
ENSSFOG00015009773	srl	95	77.729	ENSSLDG00000014601	SRL	100	78.289	Seriola_lalandi_dorsalis
ENSSFOG00015009773	srl	97	91.453	ENSSLDG00000022024	srl	100	90.496	Seriola_lalandi_dorsalis
ENSSFOG00015009773	srl	96	82.743	ENSSPUG00000016859	SRL	97	84.127	Sphenodon_punctatus
ENSSFOG00015009773	srl	100	91.942	ENSSPAG00000019105	srl	100	91.942	Stegastes_partitus
ENSSFOG00015009773	srl	94	77.551	ENSSPAG00000014254	SRL	98	77.551	Stegastes_partitus
ENSSFOG00015009773	srl	96	83.929	ENSSSCG00000007949	SRL	98	84.580	Sus_scrofa
ENSSFOG00015009773	srl	77	86.740	ENSTGUG00000016121	-	100	86.740	Taeniopygia_guttata
ENSSFOG00015009773	srl	97	82.599	ENSTGUG00000003951	-	97	84.318	Taeniopygia_guttata
ENSSFOG00015009773	srl	100	90.083	ENSTRUG00000006005	srl	100	90.083	Takifugu_rubripes
ENSSFOG00015009773	srl	90	78.043	ENSTRUG00000013310	SRL	55	78.043	Takifugu_rubripes
ENSSFOG00015009773	srl	96	92.222	ENSTNIG00000009739	srl	100	87.603	Tetraodon_nigroviridis
ENSSFOG00015009773	srl	97	82.781	ENSUAMG00000005701	SRL	55	83.937	Ursus_americanus
ENSSFOG00015009773	srl	97	83.002	ENSUMAG00000002574	SRL	55	84.163	Ursus_maritimus
ENSSFOG00015009773	srl	99	78.846	ENSXETG00000017313	srl	98	82.353	Xenopus_tropicalis
ENSSFOG00015009773	srl	96	77.333	ENSXCOG00000014584	SRL	98	77.928	Xiphophorus_couchianus
ENSSFOG00015009773	srl	90	91.489	ENSXCOG00000010424	srl	97	91.489	Xiphophorus_couchianus
ENSSFOG00015009773	srl	100	89.072	ENSXMAG00000004625	srl	95	88.843	Xiphophorus_maculatus
ENSSFOG00015009773	srl	96	74.946	ENSXMAG00000027598	SRL	62	75.492	Xiphophorus_maculatus