EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015009951 (Gene tree)
Gene ID: 108921625
Gene Symbol: cirbpa
Alias: -
Full Name: cold-inducible RNA-binding protein B-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 4999 bases
Position: chrKV410807.1:677901-682899
Accession: 108921625
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015015421	RRM_1	PF00076.22	2.7e-26	1	1
ENSSFOP00015015399	RRM_1	PF00076.22	2.8e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015015581	-	771	XM_018731165	ENSSFOP00015015399	193 (aa)	XP_018586681	A0A1W4YEE1
ENSSFOT00015015603	-	2198	XM_018731164	ENSSFOP00015015421	189 (aa)	XP_018586680	A0A1W4Y541

Gene Model

Click here to download ENSSFOG00015009951's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015009951's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015009951	cirbpa	73	37.879	ENSSFOG00015015838	elavl4	56	37.500
ENSSFOG00015009951	cirbpa	57	36.449	ENSSFOG00015020292	srsf4	63	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015009951	cirbpa	100	59.788	ENSACLG00000002094	-	99	57.838	Astatotilapia_calliptera
ENSSFOG00015009951	cirbpa	100	60.847	ENSHBUG00000022060	cirbpa	100	58.201	Haplochromis_burtoni
ENSSFOG00015009951	cirbpa	100	60.847	ENSMZEG00005025577	-	100	58.201	Maylandia_zebra
ENSSFOG00015009951	cirbpa	100	60.847	ENSNBRG00000019658	cirbpa	100	58.201	Neolamprologus_brichardi
ENSSFOG00015009951	cirbpa	100	86.387	ENSPKIG00000010561	cirbpa	100	88.482	Paramormyrops_kingsleyae
ENSSFOG00015009951	cirbpa	100	64.249	ENSPFOG00000015653	cirbpa	98	56.995	Poecilia_formosa
ENSSFOG00015009951	cirbpa	100	60.847	ENSPNYG00000007198	-	100	58.201	Pundamilia_nyererei
ENSSFOG00015009951	cirbpa	100	59.788	ENSTRUG00000010187	cirbpa	59	76.250	Takifugu_rubripes
ENSSFOG00015009951	cirbpa	99	59.474	ENSXCOG00000008262	cirbpa	92	69.863	Xiphophorus_couchianus