EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSFOG00015010099 (Gene tree)
Gene ID
108927684
Gene Symbol
lsm5
Alias
zgc:171959
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Scleropages_formosus
Status
putative
Strand
Plus strand
Length
2448 bases
Position
chrKV410874.1:4153677-4156124
Accession
108927684
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSFOP00015015653LSMPF01423.221.2e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSFOT00015015835-919XM_018741113ENSSFOP0001501565391 (aa)XP_018596629A0A1W4YYJ7
Gene Model
Click here to download ENSSFOG00015010099's gene model file
Pathways
Pathway IDPathway NameSource
sfm03018RNA degradationKEGG
sfm03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015010099's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSFOG00015010099lsm58630.488ENSSFOG00015001485snrpe8730.488
ENSSFOG00015010099lsm59235.714ENSSFOG00015007071lsm38135.714
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSFOG00015010099lsm510094.505ENSG00000106355LSM510096.774Homo_sapiens
ENSSFOG00015010099lsm59096.341ENSAPOG00000011743LSM510098.387Acanthochromis_polyacanthus
ENSSFOG00015010099lsm510097.802ENSAPOG00000020779LSM510097.802Acanthochromis_polyacanthus
ENSSFOG00015010099lsm510094.505ENSAMEG00000006700LSM510094.505Ailuropoda_melanoleuca
ENSSFOG00015010099lsm59660.920ENSACIG00000019185lsm59860.920Amphilophus_citrinellus
ENSSFOG00015010099lsm510097.802ENSAOCG00000001636lsm510097.802Amphiprion_ocellaris
ENSSFOG00015010099lsm510097.802ENSAPEG00000008151lsm510097.802Amphiprion_percula
ENSSFOG00015010099lsm56898.387ENSAPEG00000008201lsm510098.387Amphiprion_percula
ENSSFOG00015010099lsm59096.341ENSATEG00000020470lsm510062.637Anabas_testudineus
ENSSFOG00015010099lsm58197.297ENSAPLG00000008171LSM510097.297Anas_platyrhynchos
ENSSFOG00015010099lsm56292.857ENSACAG00000009530LSM59392.857Anolis_carolinensis
ENSSFOG00015010099lsm510095.604ENSANAG00000034409-10095.604Aotus_nancymaae
ENSSFOG00015010099lsm59992.222ENSANAG00000024192-9492.222Aotus_nancymaae
ENSSFOG00015010099lsm510073.626ENSANAG00000037758-10073.626Aotus_nancymaae
ENSSFOG00015010099lsm59697.701ENSACLG00000012891lsm59997.701Astatotilapia_calliptera
ENSSFOG00015010099lsm510085.106ENSAMXG00000035543lsm510085.106Astyanax_mexicanus
ENSSFOG00015010099lsm55375.000ENSBTAG00000052014-6375.000Bos_taurus
ENSSFOG00015010099lsm510094.505ENSBTAG00000002332LSM510094.505Bos_taurus
ENSSFOG00015010099lsm510073.626WBGene00003079lsm-510073.626Caenorhabditis_elegans
ENSSFOG00015010099lsm510094.505ENSCJAG00000047379LSM58184.615Callithrix_jacchus
ENSSFOG00015010099lsm59982.222ENSCJAG00000005678-10082.222Callithrix_jacchus
ENSSFOG00015010099lsm55586.000ENSCAFG00000030781-5886.000Canis_familiaris
ENSSFOG00015010099lsm510093.407ENSCAFG00000019261-10093.407Canis_familiaris
ENSSFOG00015010099lsm510094.505ENSCAFG00020004946LSM510094.505Canis_lupus_dingo
ENSSFOG00015010099lsm58172.973ENSCHIG00000021428-9570.455Capra_hircus
ENSSFOG00015010099lsm510094.505ENSCHIG00000024539LSM510094.505Capra_hircus
ENSSFOG00015010099lsm510092.308ENSCHIG00000004079-10092.308Capra_hircus
ENSSFOG00015010099lsm510069.231ENSTSYG00000036637-10069.231Carlito_syrichta
ENSSFOG00015010099lsm510094.505ENSTSYG00000006449-10094.505Carlito_syrichta
ENSSFOG00015010099lsm510078.022ENSTSYG00000026530-9178.022Carlito_syrichta
ENSSFOG00015010099lsm510082.418ENSTSYG00000028728-10082.418Carlito_syrichta
ENSSFOG00015010099lsm58290.667ENSCAPG00000006980LSM510090.667Cavia_aperea
ENSSFOG00015010099lsm510094.505ENSCPOG00000036386LSM510094.505Cavia_porcellus
ENSSFOG00015010099lsm510094.505ENSCCAG00000037808-10094.505Cebus_capucinus
ENSSFOG00015010099lsm510063.736ENSCCAG00000037334-10063.736Cebus_capucinus
ENSSFOG00015010099lsm510093.407ENSCCAG00000000821-10093.407Cebus_capucinus
ENSSFOG00015010099lsm510075.824ENSCCAG00000032792-10075.824Cebus_capucinus
ENSSFOG00015010099lsm510092.308ENSCCAG00000032123-10092.308Cebus_capucinus
ENSSFOG00015010099lsm510094.505ENSCATG00000040218LSM510096.774Cercocebus_atys
ENSSFOG00015010099lsm59983.333ENSCATG00000014790-9590.909Cercocebus_atys
ENSSFOG00015010099lsm510080.220ENSCLAG00000005062-9080.220Chinchilla_lanigera
ENSSFOG00015010099lsm510094.505ENSCLAG00000000202LSM510094.505Chinchilla_lanigera
ENSSFOG00015010099lsm58294.667ENSCHOG00000005335LSM59994.667Choloepus_hoffmanni
ENSSFOG00015010099lsm510094.505ENSCPBG00000013685LSM510094.505Chrysemys_picta_bellii
ENSSFOG00015010099lsm59785.227ENSCING00000020625-9985.227Ciona_intestinalis
ENSSFOG00015010099lsm59587.209ENSCSAVG00000001439-9887.209Ciona_savignyi
ENSSFOG00015010099lsm510094.505ENSCANG00000039909LSM510096.774Colobus_angolensis_palliatus
ENSSFOG00015010099lsm510094.505ENSCGRG00001015461Lsm510094.505Cricetulus_griseus_chok1gshd
ENSSFOG00015010099lsm58297.333ENSCGRG00000007677Lsm510097.333Cricetulus_griseus_crigri
ENSSFOG00015010099lsm510061.538ENSCSEG00000015286lsm510061.538Cynoglossus_semilaevis
ENSSFOG00015010099lsm510097.802ENSCVAG00000004262lsm510097.802Cyprinodon_variegatus
ENSSFOG00015010099lsm510097.802ENSDARG00000071573lsm5100100.000Danio_rerio
ENSSFOG00015010099lsm59683.908ENSDNOG00000049495-9683.908Dasypus_novemcinctus
ENSSFOG00015010099lsm510094.505ENSDNOG00000034958LSM510094.505Dasypus_novemcinctus
ENSSFOG00015010099lsm510094.505ENSDORG00000009422Lsm510094.505Dipodomys_ordii
ENSSFOG00015010099lsm59581.395FBgn0035675CG66109581.395Drosophila_melanogaster
ENSSFOG00015010099lsm59876.404ENSETEG00000010651-9976.404Echinops_telfairi
ENSSFOG00015010099lsm59973.333ENSETEG00000001469-9973.333Echinops_telfairi
ENSSFOG00015010099lsm59862.921ENSETEG00000000777-9962.921Echinops_telfairi
ENSSFOG00015010099lsm58178.378ENSETEG00000016074-9878.378Echinops_telfairi
ENSSFOG00015010099lsm510094.505ENSETEG00000018068LSM510094.505Echinops_telfairi
ENSSFOG00015010099lsm510093.407ENSEBUG00000008540lsm510093.407Eptatretus_burgeri
ENSSFOG00015010099lsm510094.505ENSEASG00005003500LSM510094.505Equus_asinus_asinus
ENSSFOG00015010099lsm510080.220ENSECAG00000018445LSM510080.220Equus_caballus
ENSSFOG00015010099lsm56392.982ENSEEUG00000004102LSM59592.982Erinaceus_europaeus
ENSSFOG00015010099lsm510098.901ENSELUG00000007792lsm510098.901Esox_lucius
ENSSFOG00015010099lsm510094.505ENSFCAG00000000230LSM510094.505Felis_catus
ENSSFOG00015010099lsm58497.368ENSFALG00000001892LSM59297.368Ficedula_albicollis
ENSSFOG00015010099lsm510094.505ENSFDAG00000008767LSM510094.505Fukomys_damarensis
ENSSFOG00015010099lsm59067.073ENSFDAG00000008685-9767.073Fukomys_damarensis
ENSSFOG00015010099lsm510076.087ENSFHEG00000004011lsm510076.087Fundulus_heteroclitus
ENSSFOG00015010099lsm59997.778ENSGMOG00000018235lsm510097.778Gadus_morhua
ENSSFOG00015010099lsm510094.505ENSGALG00000041625LSM510094.505Gallus_gallus
ENSSFOG00015010099lsm56898.387ENSGAFG00000016824lsm510098.387Gambusia_affinis
ENSSFOG00015010099lsm510096.703ENSGACG00000005528lsm510096.703Gasterosteus_aculeatus
ENSSFOG00015010099lsm510094.505ENSGAGG00000015593LSM510094.505Gopherus_agassizii
ENSSFOG00015010099lsm510094.505ENSGGOG00000043469LSM510094.505Gorilla_gorilla
ENSSFOG00015010099lsm59697.701ENSHBUG00000013773lsm59997.701Haplochromis_burtoni
ENSSFOG00015010099lsm510094.505ENSHGLG00000011765LSM510094.505Heterocephalus_glaber_female
ENSSFOG00015010099lsm510091.209ENSHGLG00100015610LSM510091.209Heterocephalus_glaber_male
ENSSFOG00015010099lsm510061.538ENSHCOG00000008288lsm510061.538Hippocampus_comes
ENSSFOG00015010099lsm510097.802ENSIPUG00000021095LSM510097.802Ictalurus_punctatus
ENSSFOG00015010099lsm510094.505ENSSTOG00000012662LSM510094.505Ictidomys_tridecemlineatus
ENSSFOG00015010099lsm59280.233ENSSTOG00000033886-9780.233Ictidomys_tridecemlineatus
ENSSFOG00015010099lsm510067.033ENSJJAG00000016144-9267.033Jaculus_jaculus
ENSSFOG00015010099lsm58787.342ENSJJAG00000004475-10087.342Jaculus_jaculus
ENSSFOG00015010099lsm510092.308ENSJJAG00000012145-10092.308Jaculus_jaculus
ENSSFOG00015010099lsm510096.703ENSKMAG00000021861lsm510096.703Kryptolebias_marmoratus
ENSSFOG00015010099lsm510089.011ENSLBEG00000009235LSM57089.011Labrus_bergylta
ENSSFOG00015010099lsm56283.929ENSLBEG00000017379lsm59283.929Labrus_bergylta
ENSSFOG00015010099lsm510096.703ENSLACG00000022448LSM510096.703Latimeria_chalumnae
ENSSFOG00015010099lsm510097.802ENSLOCG00000012903lsm510097.802Lepisosteus_oculatus
ENSSFOG00015010099lsm510070.330ENSLAFG00000027938-10070.330Loxodonta_africana
ENSSFOG00015010099lsm510094.505ENSLAFG00000029579LSM510094.505Loxodonta_africana
ENSSFOG00015010099lsm510092.308ENSMFAG00000030152-10092.308Macaca_fascicularis
ENSSFOG00015010099lsm510094.505ENSMFAG00000038508LSM510094.505Macaca_fascicularis
ENSSFOG00015010099lsm55389.583ENSMFAG00000031187-8189.583Macaca_fascicularis
ENSSFOG00015010099lsm55784.615ENSMMUG00000045129-8184.615Macaca_mulatta
ENSSFOG00015010099lsm59984.444ENSMMUG00000039822-10084.444Macaca_mulatta
ENSSFOG00015010099lsm510092.308ENSMMUG00000030131-10092.308Macaca_mulatta
ENSSFOG00015010099lsm510094.505ENSMNEG00000015331LSM510096.774Macaca_nemestrina
ENSSFOG00015010099lsm510092.308ENSMNEG00000037935-10092.308Macaca_nemestrina
ENSSFOG00015010099lsm59883.146ENSMLEG00000034037-10083.146Mandrillus_leucophaeus
ENSSFOG00015010099lsm510094.505ENSMLEG00000024945LSM510094.505Mandrillus_leucophaeus
ENSSFOG00015010099lsm510093.407ENSMAMG00000012869lsm510093.407Mastacembelus_armatus
ENSSFOG00015010099lsm59697.701ENSMZEG00005019554lsm59997.701Maylandia_zebra
ENSSFOG00015010099lsm510094.505ENSMGAG00000012117LSM510094.505Meleagris_gallopavo
ENSSFOG00015010099lsm510093.407ENSMAUG00000008132-10093.407Mesocricetus_auratus
ENSSFOG00015010099lsm510094.505ENSMAUG00000012222Lsm510094.505Mesocricetus_auratus
ENSSFOG00015010099lsm510094.505ENSMICG00000005353LSM510094.505Microcebus_murinus
ENSSFOG00015010099lsm59973.333ENSMICG00000033928-9673.333Microcebus_murinus
ENSSFOG00015010099lsm510094.505ENSMOCG00000012018Lsm510094.505Microtus_ochrogaster
ENSSFOG00015010099lsm58498.684ENSMMOG00000004026lsm58798.684Mola_mola
ENSSFOG00015010099lsm56896.774ENSMODG00000013274-10096.774Monodelphis_domestica
ENSSFOG00015010099lsm56895.161ENSMALG00000010343lsm510095.161Monopterus_albus
ENSSFOG00015010099lsm510094.505MGP_CAROLIEiJ_G0028421Lsm510094.505Mus_caroli
ENSSFOG00015010099lsm510094.505ENSMUSG00000091625Lsm510094.505Mus_musculus
ENSSFOG00015010099lsm510094.505MGP_PahariEiJ_G0022171Lsm510094.505Mus_pahari
ENSSFOG00015010099lsm510094.505MGP_SPRETEiJ_G0029423Lsm510094.505Mus_spretus
ENSSFOG00015010099lsm510094.505ENSMLUG00000017028LSM510094.505Myotis_lucifugus
ENSSFOG00015010099lsm510094.505ENSNGAG00000024142Lsm510094.505Nannospalax_galili
ENSSFOG00015010099lsm510082.796ENSNGAG00000017707-10082.796Nannospalax_galili
ENSSFOG00015010099lsm59974.444ENSNGAG00000022569-9674.444Nannospalax_galili
ENSSFOG00015010099lsm56398.246ENSNBRG00000011386lsm57698.246Neolamprologus_brichardi
ENSSFOG00015010099lsm510094.505ENSNLEG00000015268LSM510094.505Nomascus_leucogenys
ENSSFOG00015010099lsm58297.333ENSOPRG00000002443LSM510097.333Ochotona_princeps
ENSSFOG00015010099lsm510094.505ENSODEG00000019072-10094.505Octodon_degus
ENSSFOG00015010099lsm510094.505ENSODEG00000008258-10094.505Octodon_degus
ENSSFOG00015010099lsm58260.000ENSOANG00000014540-10060.000Ornithorhynchus_anatinus
ENSSFOG00015010099lsm510094.505ENSOCUG00000029043LSM510094.505Oryctolagus_cuniculus
ENSSFOG00015010099lsm510096.703ENSORLG00000027725lsm55896.703Oryzias_latipes
ENSSFOG00015010099lsm59693.103ENSORLG00020003019lsm58693.103Oryzias_latipes_hni
ENSSFOG00015010099lsm510096.703ENSORLG00015003338lsm510096.703Oryzias_latipes_hsok
ENSSFOG00015010099lsm510095.604ENSOMEG00000001078lsm510095.604Oryzias_melastigma
ENSSFOG00015010099lsm510094.505ENSOGAG00000013892LSM510094.505Otolemur_garnettii
ENSSFOG00015010099lsm510094.505ENSOARG00000006944LSM510094.505Ovis_aries
ENSSFOG00015010099lsm510094.505ENSPPAG00000003697-10094.505Pan_paniscus
ENSSFOG00015010099lsm510094.505ENSPPRG00000002550LSM510094.505Panthera_pardus
ENSSFOG00015010099lsm510094.505ENSPTIG00000015604LSM510094.505Panthera_tigris_altaica
ENSSFOG00015010099lsm510094.505ENSPTRG00000019057LSM510094.505Pan_troglodytes
ENSSFOG00015010099lsm510078.022ENSPTRG00000049488-10080.220Pan_troglodytes
ENSSFOG00015010099lsm59984.444ENSPANG00000032538-10084.444Papio_anubis
ENSSFOG00015010099lsm510091.209ENSPANG00000033477-10091.209Papio_anubis
ENSSFOG00015010099lsm510094.505ENSPANG00000032179-10094.505Papio_anubis
ENSSFOG00015010099lsm5100100.000ENSPKIG00000011910lsm5100100.000Paramormyrops_kingsleyae
ENSSFOG00015010099lsm58197.297ENSPSIG00000014796LSM510097.297Pelodiscus_sinensis
ENSSFOG00015010099lsm56898.387ENSPMGG00000011699lsm510098.387Periophthalmus_magnuspinnatus
ENSSFOG00015010099lsm55291.489ENSPEMG00000019994-8091.489Peromyscus_maniculatus_bairdii
ENSSFOG00015010099lsm510067.033ENSPEMG00000022375-10067.033Peromyscus_maniculatus_bairdii
ENSSFOG00015010099lsm510097.802ENSPFOG00000001433lsm510097.802Poecilia_formosa
ENSSFOG00015010099lsm510097.802ENSPLAG00000009665lsm510097.802Poecilia_latipinna
ENSSFOG00015010099lsm510097.802ENSPMEG00000022265lsm510097.802Poecilia_mexicana
ENSSFOG00015010099lsm56898.387ENSPREG00000022452lsm510098.387Poecilia_reticulata
ENSSFOG00015010099lsm510091.209ENSPPYG00000017661LSM510091.209Pongo_abelii
ENSSFOG00015010099lsm58995.062ENSPCAG00000013740LSM510095.062Procavia_capensis
ENSSFOG00015010099lsm510094.505ENSPVAG00000009786LSM510094.505Pteropus_vampyrus
ENSSFOG00015010099lsm59697.701ENSPNYG00000022236lsm59997.701Pundamilia_nyererei
ENSSFOG00015010099lsm510097.802ENSPNAG00000001887lsm510097.802Pygocentrus_nattereri
ENSSFOG00015010099lsm510091.304ENSRNOG00000027305AABR07065089.110091.304Rattus_norvegicus
ENSSFOG00015010099lsm510094.505ENSRNOG00000042126Lsm510094.505Rattus_norvegicus
ENSSFOG00015010099lsm510094.505ENSRBIG00000027803-10096.774Rhinopithecus_bieti
ENSSFOG00015010099lsm510093.407ENSRBIG00000024431-10093.407Rhinopithecus_bieti
ENSSFOG00015010099lsm510094.505ENSRBIG00000030714-10094.505Rhinopithecus_bieti
ENSSFOG00015010099lsm510094.505ENSRBIG00000030340-10094.505Rhinopithecus_bieti
ENSSFOG00015010099lsm510094.505ENSRROG00000023884-10094.505Rhinopithecus_roxellana
ENSSFOG00015010099lsm510094.505ENSRROG00000004655-10094.505Rhinopithecus_roxellana
ENSSFOG00015010099lsm510094.505ENSRROG00000042782-10096.774Rhinopithecus_roxellana
ENSSFOG00015010099lsm58548.780YER146W-8848.780Saccharomyces_cerevisiae
ENSSFOG00015010099lsm510072.527ENSSBOG00000034794-10072.527Saimiri_boliviensis_boliviensis
ENSSFOG00015010099lsm510094.505ENSSBOG00000012312LSM510094.505Saimiri_boliviensis_boliviensis
ENSSFOG00015010099lsm510092.308ENSSBOG00000019124-10092.308Saimiri_boliviensis_boliviensis
ENSSFOG00015010099lsm510061.538ENSSMAG00000007895lsm510061.538Scophthalmus_maximus
ENSSFOG00015010099lsm56898.387ENSSDUG00000010762lsm510098.387Seriola_dumerili
ENSSFOG00015010099lsm58676.923ENSSLDG00000008014-9376.923Seriola_lalandi_dorsalis
ENSSFOG00015010099lsm510098.901ENSSLDG00000025242lsm510098.901Seriola_lalandi_dorsalis
ENSSFOG00015010099lsm510065.934ENSSARG00000003330LSM510065.934Sorex_araneus
ENSSFOG00015010099lsm510092.308ENSSPUG00000002690LSM510095.161Sphenodon_punctatus
ENSSFOG00015010099lsm510062.637ENSSPAG00000005435lsm510062.637Stegastes_partitus
ENSSFOG00015010099lsm510094.505ENSSSCG00000026064-10094.505Sus_scrofa
ENSSFOG00015010099lsm57684.058ENSSSCG00000029661-9684.058Sus_scrofa
ENSSFOG00015010099lsm510093.407ENSTGUG00000017539LSM510093.407Taeniopygia_guttata
ENSSFOG00015010099lsm58589.024ENSTRUG00000017749lsm56489.024Takifugu_rubripes
ENSSFOG00015010099lsm59597.674ENSTNIG00000008695lsm59897.674Tetraodon_nigroviridis
ENSSFOG00015010099lsm510094.505ENSTBEG00000004876LSM510094.505Tupaia_belangeri
ENSSFOG00015010099lsm510094.505ENSTTRG00000004237LSM510094.505Tursiops_truncatus
ENSSFOG00015010099lsm55784.615ENSUAMG00000009786LSM56884.615Ursus_americanus
ENSSFOG00015010099lsm510093.407ENSUMAG00000002625LSM56593.407Ursus_maritimus
ENSSFOG00015010099lsm510094.505ENSVPAG00000009985LSM510094.505Vicugna_pacos
ENSSFOG00015010099lsm510094.505ENSVVUG00000021311LSM510094.505Vulpes_vulpes
ENSSFOG00015010099lsm59093.902ENSXETG00000026465lsm510093.902Xenopus_tropicalis
ENSSFOG00015010099lsm56898.387ENSXCOG00000015348lsm510098.387Xiphophorus_couchianus
ENSSFOG00015010099lsm510097.802ENSXMAG00000029988lsm510097.802Xiphophorus_maculatus

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