EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015011572 (Gene tree)
Gene ID: 108942537
Gene Symbol: RTCB
Alias: C22orf28|FAAP|HSPC117
Full Name: tRNA-splicing ligase RtcB homolog
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 6676 bases
Position: chrKV411248.1:830771-837446
Accession: 108942537
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015018015	RtcB	PF01139.17	4e-143	1	1
ENSSFOP00015018034	RtcB	PF01139.17	1.9e-138	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015018241	RTCB-202	1500	-	ENSSFOP00015018034	499 (aa)	-	-
ENSSFOT00015018222	RTCB-201	2143	XM_018765952	ENSSFOP00015018015	505 (aa)	XP_018621468	A0A1W5B681

Gene Model

Click here to download ENSSFOG00015011572's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015011572's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015011572	RTCB	100	94.257	ENSSFOG00015000763	rtcb	100	94.257

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015011572	RTCB	100	93.861	ENSG00000100220	RTCB	100	93.861	Homo_sapiens
ENSSFOG00015011572	RTCB	100	94.257	ENSAPOG00000006040	rtcb	100	94.257	Acanthochromis_polyacanthus
ENSSFOG00015011572	RTCB	100	93.861	ENSAMEG00000016152	RTCB	100	93.861	Ailuropoda_melanoleuca
ENSSFOG00015011572	RTCB	100	90.581	ENSACIG00000009083	rtcb	100	90.581	Amphilophus_citrinellus
ENSSFOG00015011572	RTCB	100	94.257	ENSAOCG00000005662	rtcb	100	94.783	Amphiprion_ocellaris
ENSSFOG00015011572	RTCB	100	94.257	ENSAPEG00000024701	rtcb	100	94.257	Amphiprion_percula
ENSSFOG00015011572	RTCB	96	88.912	ENSAPEG00000024653	rtcb	100	88.912	Amphiprion_percula
ENSSFOG00015011572	RTCB	100	93.663	ENSATEG00000000618	rtcb	100	93.663	Anabas_testudineus
ENSSFOG00015011572	RTCB	100	90.751	ENSACAG00000014817	RTCB	100	90.751	Anolis_carolinensis
ENSSFOG00015011572	RTCB	72	97.222	ENSANAG00000023724	-	84	97.222	Aotus_nancymaae
ENSSFOG00015011572	RTCB	100	78.812	ENSANAG00000018191	-	91	78.812	Aotus_nancymaae
ENSSFOG00015011572	RTCB	100	93.663	ENSACLG00000008367	rtcb	100	94.565	Astatotilapia_calliptera
ENSSFOG00015011572	RTCB	100	94.455	ENSAMXG00000042320	rtcb	100	94.455	Astyanax_mexicanus
ENSSFOG00015011572	RTCB	100	93.861	ENSBTAG00000011070	RTCB	100	93.861	Bos_taurus
ENSSFOG00015011572	RTCB	100	72.475	WBGene00008877	rtcb-1	100	72.475	Caenorhabditis_elegans
ENSSFOG00015011572	RTCB	100	93.663	ENSCJAG00000006128	RTCB	100	93.663	Callithrix_jacchus
ENSSFOG00015011572	RTCB	100	89.505	ENSCAFG00000010789	-	100	89.505	Canis_familiaris
ENSSFOG00015011572	RTCB	100	93.861	ENSCAFG00000001785	RTCB	100	93.861	Canis_familiaris
ENSSFOG00015011572	RTCB	87	89.318	ENSCAFG00020018953	-	99	89.318	Canis_lupus_dingo
ENSSFOG00015011572	RTCB	100	93.861	ENSCAFG00020004890	-	100	93.861	Canis_lupus_dingo
ENSSFOG00015011572	RTCB	100	93.861	ENSCHIG00000027009	-	100	93.861	Capra_hircus
ENSSFOG00015011572	RTCB	100	93.861	ENSTSYG00000012320	RTCB	100	93.861	Carlito_syrichta
ENSSFOG00015011572	RTCB	94	93.711	ENSCAPG00000011647	RTCB	96	93.711	Cavia_aperea
ENSSFOG00015011572	RTCB	100	93.663	ENSCCAG00000000618	RTCB	100	93.663	Cebus_capucinus
ENSSFOG00015011572	RTCB	100	93.663	ENSCATG00000033424	RTCB	100	93.663	Cercocebus_atys
ENSSFOG00015011572	RTCB	100	93.465	ENSCLAG00000007997	RTCB	100	93.465	Chinchilla_lanigera
ENSSFOG00015011572	RTCB	100	93.465	ENSCSAG00000008351	RTCB	100	93.465	Chlorocebus_sabaeus
ENSSFOG00015011572	RTCB	100	79.802	ENSCHOG00000009123	RTCB	100	79.802	Choloepus_hoffmanni
ENSSFOG00015011572	RTCB	100	93.069	ENSCPBG00000023184	RTCB	100	93.069	Chrysemys_picta_bellii
ENSSFOG00015011572	RTCB	100	80.396	ENSCING00000003830	-	100	80.396	Ciona_intestinalis
ENSSFOG00015011572	RTCB	100	80.594	ENSCSAVG00000008124	-	99	80.594	Ciona_savignyi
ENSSFOG00015011572	RTCB	100	89.901	ENSCANG00000001891	RTCB	100	89.901	Colobus_angolensis_palliatus
ENSSFOG00015011572	RTCB	100	93.861	ENSCGRG00001011173	Rtcb	100	93.861	Cricetulus_griseus_chok1gshd
ENSSFOG00015011572	RTCB	93	93.843	ENSCGRG00000009587	-	96	93.843	Cricetulus_griseus_crigri
ENSSFOG00015011572	RTCB	100	93.465	ENSCSEG00000003986	rtcb	100	93.465	Cynoglossus_semilaevis
ENSSFOG00015011572	RTCB	82	92.308	ENSCVAG00000000569	rtcb	95	92.308	Cyprinodon_variegatus
ENSSFOG00015011572	RTCB	100	94.851	ENSDARG00000101047	rtcb	100	94.851	Danio_rerio
ENSSFOG00015011572	RTCB	80	89.926	ENSDNOG00000012425	RTCB	99	89.926	Dasypus_novemcinctus
ENSSFOG00015011572	RTCB	100	94.059	ENSDORG00000010855	Rtcb	100	94.059	Dipodomys_ordii
ENSSFOG00015011572	RTCB	99	82.306	FBgn0032781	RtcB	99	82.306	Drosophila_melanogaster
ENSSFOG00015011572	RTCB	100	87.921	ENSETEG00000001988	RTCB	100	87.921	Echinops_telfairi
ENSSFOG00015011572	RTCB	100	85.149	ENSEBUG00000014235	rtcb	100	85.149	Eptatretus_burgeri
ENSSFOG00015011572	RTCB	100	94.059	ENSEASG00005019059	RTCB	100	94.059	Equus_asinus_asinus
ENSSFOG00015011572	RTCB	100	94.059	ENSECAG00000023998	RTCB	100	94.059	Equus_caballus
ENSSFOG00015011572	RTCB	89	84.340	ENSEEUG00000006251	RTCB	100	84.340	Erinaceus_europaeus
ENSSFOG00015011572	RTCB	100	84.483	ENSELUG00000009275	rtcb	100	84.483	Esox_lucius
ENSSFOG00015011572	RTCB	100	93.861	ENSFCAG00000026480	RTCB	100	93.861	Felis_catus
ENSSFOG00015011572	RTCB	100	94.257	ENSFALG00000013334	RTCB	100	94.257	Ficedula_albicollis
ENSSFOG00015011572	RTCB	100	93.663	ENSFDAG00000018150	RTCB	100	93.663	Fukomys_damarensis
ENSSFOG00015011572	RTCB	100	93.663	ENSFHEG00000009595	rtcb	100	93.663	Fundulus_heteroclitus
ENSSFOG00015011572	RTCB	100	91.683	ENSGMOG00000018882	rtcb	100	91.683	Gadus_morhua
ENSSFOG00015011572	RTCB	100	93.663	ENSGALG00000012611	RTCB	100	93.663	Gallus_gallus
ENSSFOG00015011572	RTCB	100	93.465	ENSGAFG00000004198	rtcb	100	93.465	Gambusia_affinis
ENSSFOG00015011572	RTCB	100	93.861	ENSGACG00000000586	rtcb	100	93.861	Gasterosteus_aculeatus
ENSSFOG00015011572	RTCB	93	92.340	ENSGAGG00000019133	RTCB	98	92.340	Gopherus_agassizii
ENSSFOG00015011572	RTCB	100	93.861	ENSGGOG00000011402	RTCB	100	93.861	Gorilla_gorilla
ENSSFOG00015011572	RTCB	100	93.663	ENSHBUG00000020571	rtcb	100	93.663	Haplochromis_burtoni
ENSSFOG00015011572	RTCB	100	93.663	ENSHGLG00000004492	RTCB	100	93.663	Heterocephalus_glaber_female
ENSSFOG00015011572	RTCB	93	66.949	ENSHGLG00000001066	-	99	66.949	Heterocephalus_glaber_female
ENSSFOG00015011572	RTCB	100	93.663	ENSHGLG00100008965	RTCB	100	93.663	Heterocephalus_glaber_male
ENSSFOG00015011572	RTCB	100	91.124	ENSHCOG00000006450	rtcb	100	91.124	Hippocampus_comes
ENSSFOG00015011572	RTCB	100	94.455	ENSIPUG00000015443	rtcb	100	94.455	Ictalurus_punctatus
ENSSFOG00015011572	RTCB	100	93.465	ENSSTOG00000003878	RTCB	100	93.465	Ictidomys_tridecemlineatus
ENSSFOG00015011572	RTCB	100	94.059	ENSJJAG00000010667	Rtcb	100	94.059	Jaculus_jaculus
ENSSFOG00015011572	RTCB	100	93.069	ENSKMAG00000013178	rtcb	100	93.069	Kryptolebias_marmoratus
ENSSFOG00015011572	RTCB	100	92.673	ENSLBEG00000000214	rtcb	100	92.673	Labrus_bergylta
ENSSFOG00015011572	RTCB	100	93.663	ENSLBEG00000010566	RTCB	100	93.663	Labrus_bergylta
ENSSFOG00015011572	RTCB	100	93.267	ENSLACG00000013033	RTCB	100	93.267	Latimeria_chalumnae
ENSSFOG00015011572	RTCB	100	95.842	ENSLOCG00000016515	rtcb	99	95.842	Lepisosteus_oculatus
ENSSFOG00015011572	RTCB	100	93.267	ENSLAFG00000002082	RTCB	100	93.267	Loxodonta_africana
ENSSFOG00015011572	RTCB	100	93.465	ENSMFAG00000034419	RTCB	100	93.465	Macaca_fascicularis
ENSSFOG00015011572	RTCB	100	93.465	ENSMMUG00000006720	RTCB	100	93.465	Macaca_mulatta
ENSSFOG00015011572	RTCB	100	93.465	ENSMNEG00000040669	RTCB	100	93.465	Macaca_nemestrina
ENSSFOG00015011572	RTCB	100	93.663	ENSMLEG00000040505	RTCB	100	93.663	Mandrillus_leucophaeus
ENSSFOG00015011572	RTCB	100	93.663	ENSMAMG00000020676	rtcb	100	93.663	Mastacembelus_armatus
ENSSFOG00015011572	RTCB	100	93.663	ENSMZEG00005018942	rtcb	100	93.663	Maylandia_zebra
ENSSFOG00015011572	RTCB	100	93.294	ENSMGAG00000012805	RTCB	100	93.294	Meleagris_gallopavo
ENSSFOG00015011572	RTCB	60	99.115	ENSMAUG00000008301	Rtcb	100	99.115	Mesocricetus_auratus
ENSSFOG00015011572	RTCB	100	74.653	ENSMICG00000036677	-	100	74.653	Microcebus_murinus
ENSSFOG00015011572	RTCB	100	93.663	ENSMICG00000013303	-	100	93.663	Microcebus_murinus
ENSSFOG00015011572	RTCB	100	94.257	ENSMOCG00000002440	Rtcb	100	94.257	Microtus_ochrogaster
ENSSFOG00015011572	RTCB	100	94.059	ENSMMOG00000005987	rtcb	100	94.059	Mola_mola
ENSSFOG00015011572	RTCB	100	94.455	ENSMODG00000001414	RTCB	100	94.455	Monodelphis_domestica
ENSSFOG00015011572	RTCB	100	93.465	ENSMALG00000007603	rtcb	100	93.465	Monopterus_albus
ENSSFOG00015011572	RTCB	100	93.861	MGP_CAROLIEiJ_G0015689	Rtcb	100	93.861	Mus_caroli
ENSSFOG00015011572	RTCB	100	93.861	ENSMUSG00000001783	Rtcb	100	93.861	Mus_musculus
ENSSFOG00015011572	RTCB	100	93.861	MGP_PahariEiJ_G0031396	Rtcb	100	93.861	Mus_pahari
ENSSFOG00015011572	RTCB	100	93.861	MGP_SPRETEiJ_G0016507	Rtcb	100	93.861	Mus_spretus
ENSSFOG00015011572	RTCB	100	93.861	ENSMPUG00000012285	RTCB	100	93.861	Mustela_putorius_furo
ENSSFOG00015011572	RTCB	100	90.927	ENSMLUG00000007803	RTCB	100	90.927	Myotis_lucifugus
ENSSFOG00015011572	RTCB	72	100.000	ENSNGAG00000005093	Rtcb	100	100.000	Nannospalax_galili
ENSSFOG00015011572	RTCB	100	93.861	ENSNBRG00000017202	rtcb	100	93.861	Neolamprologus_brichardi
ENSSFOG00015011572	RTCB	100	93.861	ENSNLEG00000004960	RTCB	100	93.861	Nomascus_leucogenys
ENSSFOG00015011572	RTCB	90	96.491	ENSMEUG00000007809	-	89	96.491	Notamacropus_eugenii
ENSSFOG00015011572	RTCB	73	100.000	ENSOPRG00000003488	RTCB	79	100.000	Ochotona_princeps
ENSSFOG00015011572	RTCB	100	61.980	ENSODEG00000005042	-	100	61.980	Octodon_degus
ENSSFOG00015011572	RTCB	82	100.000	ENSODEG00000013033	-	100	100.000	Octodon_degus
ENSSFOG00015011572	RTCB	100	94.257	ENSONIG00000007474	rtcb	100	94.257	Oreochromis_niloticus
ENSSFOG00015011572	RTCB	100	94.257	ENSOANG00000005524	RTCB	100	94.257	Ornithorhynchus_anatinus
ENSSFOG00015011572	RTCB	93	93.191	ENSOCUG00000008270	RTCB	96	93.191	Oryctolagus_cuniculus
ENSSFOG00015011572	RTCB	100	93.663	ENSORLG00000020093	rtcb	100	93.663	Oryzias_latipes
ENSSFOG00015011572	RTCB	100	93.663	ENSORLG00020003706	rtcb	100	93.663	Oryzias_latipes_hni
ENSSFOG00015011572	RTCB	100	93.861	ENSORLG00015002968	rtcb	100	93.861	Oryzias_latipes_hsok
ENSSFOG00015011572	RTCB	100	93.069	ENSOMEG00000021278	rtcb	100	93.069	Oryzias_melastigma
ENSSFOG00015011572	RTCB	100	93.465	ENSOGAG00000001425	RTCB	100	93.465	Otolemur_garnettii
ENSSFOG00015011572	RTCB	100	93.861	ENSOARG00000018008	RTCB	100	93.861	Ovis_aries
ENSSFOG00015011572	RTCB	100	93.861	ENSPPAG00000028667	RTCB	100	93.861	Pan_paniscus
ENSSFOG00015011572	RTCB	100	93.861	ENSPPRG00000004038	RTCB	100	93.861	Panthera_pardus
ENSSFOG00015011572	RTCB	94	89.474	ENSPTIG00000020499	RTCB	97	90.526	Panthera_tigris_altaica
ENSSFOG00015011572	RTCB	100	93.861	ENSPTRG00000014287	RTCB	100	93.861	Pan_troglodytes
ENSSFOG00015011572	RTCB	100	93.465	ENSPANG00000016035	RTCB	100	93.465	Papio_anubis
ENSSFOG00015011572	RTCB	100	94.455	ENSPKIG00000001881	rtcb	100	94.455	Paramormyrops_kingsleyae
ENSSFOG00015011572	RTCB	91	93.696	ENSPSIG00000011690	RTCB	100	93.696	Pelodiscus_sinensis
ENSSFOG00015011572	RTCB	100	94.059	ENSPMGG00000016672	rtcb	100	94.059	Periophthalmus_magnuspinnatus
ENSSFOG00015011572	RTCB	100	93.861	ENSPEMG00000019548	Rtcb	100	93.861	Peromyscus_maniculatus_bairdii
ENSSFOG00015011572	RTCB	100	90.099	ENSPMAG00000005657	rtcb	100	90.099	Petromyzon_marinus
ENSSFOG00015011572	RTCB	100	94.455	ENSPCIG00000009467	RTCB	100	94.455	Phascolarctos_cinereus
ENSSFOG00015011572	RTCB	100	93.861	ENSPFOG00000003058	rtcb	100	93.861	Poecilia_formosa
ENSSFOG00015011572	RTCB	100	93.861	ENSPLAG00000017663	rtcb	100	93.861	Poecilia_latipinna
ENSSFOG00015011572	RTCB	100	93.861	ENSPMEG00000006227	rtcb	100	93.861	Poecilia_mexicana
ENSSFOG00015011572	RTCB	100	93.861	ENSPREG00000018467	rtcb	100	93.861	Poecilia_reticulata
ENSSFOG00015011572	RTCB	100	93.861	ENSPPYG00000011752	RTCB	100	93.861	Pongo_abelii
ENSSFOG00015011572	RTCB	93	77.331	ENSPCAG00000013641	RTCB	100	77.331	Procavia_capensis
ENSSFOG00015011572	RTCB	100	93.663	ENSPCOG00000017243	RTCB	100	93.663	Propithecus_coquereli
ENSSFOG00015011572	RTCB	93	92.766	ENSPVAG00000002380	RTCB	100	92.766	Pteropus_vampyrus
ENSSFOG00015011572	RTCB	100	93.663	ENSPNYG00000022760	rtcb	100	93.663	Pundamilia_nyererei
ENSSFOG00015011572	RTCB	100	95.446	ENSPNAG00000009209	rtcb	100	95.446	Pygocentrus_nattereri
ENSSFOG00015011572	RTCB	100	93.861	ENSRNOG00000004813	Rtcb	100	93.861	Rattus_norvegicus
ENSSFOG00015011572	RTCB	100	85.010	ENSRBIG00000042090	RTCB	100	85.010	Rhinopithecus_bieti
ENSSFOG00015011572	RTCB	100	89.109	ENSSBOG00000020085	-	100	89.109	Saimiri_boliviensis_boliviensis
ENSSFOG00015011572	RTCB	94	94.304	ENSSHAG00000016277	RTCB	100	94.304	Sarcophilus_harrisii
ENSSFOG00015011572	RTCB	100	90.891	ENSSMAG00000005096	rtcb	100	90.891	Scophthalmus_maximus
ENSSFOG00015011572	RTCB	100	92.871	ENSSDUG00000012605	rtcb	100	92.871	Seriola_dumerili
ENSSFOG00015011572	RTCB	100	92.871	ENSSLDG00000019458	rtcb	100	92.871	Seriola_lalandi_dorsalis
ENSSFOG00015011572	RTCB	66	100.000	ENSSARG00000004799	-	70	100.000	Sorex_araneus
ENSSFOG00015011572	RTCB	100	92.277	ENSSPUG00000012814	RTCB	100	92.277	Sphenodon_punctatus
ENSSFOG00015011572	RTCB	100	94.257	ENSSPAG00000004623	rtcb	100	94.257	Stegastes_partitus
ENSSFOG00015011572	RTCB	100	93.861	ENSSSCG00000000158	RTCB	100	93.861	Sus_scrofa
ENSSFOG00015011572	RTCB	100	94.257	ENSTGUG00000010947	RTCB	99	94.257	Taeniopygia_guttata
ENSSFOG00015011572	RTCB	91	94.783	ENSTRUG00000009880	rtcb	100	94.783	Takifugu_rubripes
ENSSFOG00015011572	RTCB	100	92.673	ENSTNIG00000002484	rtcb	100	92.673	Tetraodon_nigroviridis
ENSSFOG00015011572	RTCB	100	80.792	ENSTBEG00000004418	RTCB	100	80.792	Tupaia_belangeri
ENSSFOG00015011572	RTCB	93	92.553	ENSTTRG00000006417	RTCB	100	92.553	Tursiops_truncatus
ENSSFOG00015011572	RTCB	100	93.861	ENSUAMG00000022792	RTCB	100	93.861	Ursus_americanus
ENSSFOG00015011572	RTCB	100	93.861	ENSUMAG00000017225	RTCB	100	93.861	Ursus_maritimus
ENSSFOG00015011572	RTCB	100	93.663	ENSVPAG00000005375	RTCB	100	93.663	Vicugna_pacos
ENSSFOG00015011572	RTCB	100	93.861	ENSVVUG00000023408	RTCB	100	93.861	Vulpes_vulpes
ENSSFOG00015011572	RTCB	100	93.465	ENSXETG00000011523	rtcb	100	93.465	Xenopus_tropicalis
ENSSFOG00015011572	RTCB	100	93.465	ENSXMAG00000002855	rtcb	100	93.465	Xiphophorus_maculatus