EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015011774 (Gene tree)
Gene ID: 108939734
Gene Symbol: a1cf
Alias: acf
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 11205 bases
Position: chrKV411190.1:3657729-3668933
Accession: 108939734
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015018376	DND1_DSRM	PF14709.7	3e-26	1	1
ENSSFOP00015018361	DND1_DSRM	PF14709.7	3.3e-26	1	1
ENSSFOP00015018399	DND1_DSRM	PF14709.7	6e-18	1	1
ENSSFOP00015018399	RRM_5	PF13893.6	3.2e-06	1	1
ENSSFOP00015018361	RRM_5	PF13893.6	4.7e-06	1	1
ENSSFOP00015018399	RRM_1	PF00076.22	3.6e-41	1	3
ENSSFOP00015018399	RRM_1	PF00076.22	3.6e-41	2	3
ENSSFOP00015018399	RRM_1	PF00076.22	3.6e-41	3	3
ENSSFOP00015018361	RRM_1	PF00076.22	5.7e-41	1	3
ENSSFOP00015018361	RRM_1	PF00076.22	5.7e-41	2	3
ENSSFOP00015018361	RRM_1	PF00076.22	5.7e-41	3	3
ENSSFOP00015018376	RRM_1	PF00076.22	2.8e-36	1	3
ENSSFOP00015018376	RRM_1	PF00076.22	2.8e-36	2	3
ENSSFOP00015018376	RRM_1	PF00076.22	2.8e-36	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015018611	-	1976	-	ENSSFOP00015018399	529 (aa)	-	-
ENSSFOT00015018589	-	3364	-	ENSSFOP00015018376	540 (aa)	-	-
ENSSFOT00015018573	-	3610	XM_018761319	ENSSFOP00015018361	595 (aa)	XP_018616835	A0A1W5AMG8

Gene Model

Click here to download ENSSFOG00015011774's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015011774's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015011774	a1cf	74	68.106	ENSSFOG00015000087	rbm46	86	49.126
ENSSFOG00015011774	a1cf	91	57.551	ENSSFOG00015012445	rbm47	80	55.172
ENSSFOG00015011774	a1cf	55	55.631	ENSSFOG00015010922	SYNCRIP	55	54.452
ENSSFOG00015011774	a1cf	55	54.266	ENSSFOG00015022078	syncrip	52	53.584
ENSSFOG00015011774	a1cf	57	53.722	ENSSFOG00015001916	hnrnpr	67	45.581
ENSSFOG00015011774	a1cf	90	52.705	ENSSFOG00015024101	RBM47	81	52.104

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015011774	a1cf	100	80.336	ENSG00000148584	A1CF	100	88.557	Homo_sapiens
ENSSFOG00015011774	a1cf	100	80.500	ENSAPOG00000008259	a1cf	100	80.333	Acanthochromis_polyacanthus
ENSSFOG00015011774	a1cf	100	78.109	ENSAMEG00000000523	A1CF	100	78.275	Ailuropoda_melanoleuca
ENSSFOG00015011774	a1cf	100	82.372	ENSACIG00000008632	a1cf	100	83.690	Amphilophus_citrinellus
ENSSFOG00015011774	a1cf	100	81.518	ENSAOCG00000023744	a1cf	96	88.116	Amphiprion_ocellaris
ENSSFOG00015011774	a1cf	100	80.456	ENSAPEG00000009537	a1cf	100	81.270	Amphiprion_percula
ENSSFOG00015011774	a1cf	100	84.072	ENSATEG00000013720	a1cf	100	84.236	Anabas_testudineus
ENSSFOG00015011774	a1cf	100	80.100	ENSAPLG00000002964	A1CF	100	79.768	Anas_platyrhynchos
ENSSFOG00015011774	a1cf	100	79.496	ENSACAG00000015269	A1CF	100	78.992	Anolis_carolinensis
ENSSFOG00015011774	a1cf	100	80.000	ENSANAG00000019974	A1CF	100	79.832	Aotus_nancymaae
ENSSFOG00015011774	a1cf	100	81.219	ENSACLG00000017428	a1cf	100	82.043	Astatotilapia_calliptera
ENSSFOG00015011774	a1cf	100	82.314	ENSAMXG00000018180	a1cf	100	81.818	Astyanax_mexicanus
ENSSFOG00015011774	a1cf	100	81.008	ENSBTAG00000021195	A1CF	100	80.672	Bos_taurus
ENSSFOG00015011774	a1cf	100	79.104	ENSCJAG00000005045	A1CF	100	78.939	Callithrix_jacchus
ENSSFOG00015011774	a1cf	100	78.109	ENSCAFG00000015581	A1CF	100	78.607	Canis_familiaris
ENSSFOG00015011774	a1cf	100	78.109	ENSCAFG00020026421	A1CF	98	84.281	Canis_lupus_dingo
ENSSFOG00015011774	a1cf	100	79.602	ENSCHIG00000020411	A1CF	100	79.270	Capra_hircus
ENSSFOG00015011774	a1cf	94	79.893	ENSTSYG00000001755	A1CF	100	80.071	Carlito_syrichta
ENSSFOG00015011774	a1cf	89	75.926	ENSCAPG00000017386	A1CF	100	75.617	Cavia_aperea
ENSSFOG00015011774	a1cf	100	78.441	ENSCPOG00000009807	A1CF	100	78.275	Cavia_porcellus
ENSSFOG00015011774	a1cf	100	78.939	ENSCCAG00000018168	A1CF	100	78.939	Cebus_capucinus
ENSSFOG00015011774	a1cf	100	79.496	ENSCATG00000043715	A1CF	100	79.496	Cercocebus_atys
ENSSFOG00015011774	a1cf	100	78.275	ENSCLAG00000010424	A1CF	100	78.275	Chinchilla_lanigera
ENSSFOG00015011774	a1cf	100	78.939	ENSCSAG00000007032	A1CF	100	78.939	Chlorocebus_sabaeus
ENSSFOG00015011774	a1cf	98	77.551	ENSCHOG00000009089	A1CF	98	77.551	Choloepus_hoffmanni
ENSSFOG00015011774	a1cf	100	78.607	ENSCPBG00000026464	A1CF	100	78.275	Chrysemys_picta_bellii
ENSSFOG00015011774	a1cf	100	78.773	ENSCANG00000038032	A1CF	100	78.773	Colobus_angolensis_palliatus
ENSSFOG00015011774	a1cf	100	78.109	ENSCGRG00001017413	A1cf	100	77.778	Cricetulus_griseus_chok1gshd
ENSSFOG00015011774	a1cf	100	77.446	ENSCGRG00000017332	A1cf	100	77.612	Cricetulus_griseus_crigri
ENSSFOG00015011774	a1cf	100	79.378	ENSCSEG00000002361	a1cf	100	79.542	Cynoglossus_semilaevis
ENSSFOG00015011774	a1cf	100	81.609	ENSCVAG00000010520	a1cf	100	82.430	Cyprinodon_variegatus
ENSSFOG00015011774	a1cf	100	89.597	ENSDARG00000002968	a1cf	100	88.926	Danio_rerio
ENSSFOG00015011774	a1cf	100	78.607	ENSDNOG00000002829	A1CF	100	78.607	Dasypus_novemcinctus
ENSSFOG00015011774	a1cf	82	85.091	ENSETEG00000012527	A1CF	80	86.296	Echinops_telfairi
ENSSFOG00015011774	a1cf	100	79.602	ENSEASG00005012924	A1CF	100	79.436	Equus_asinus_asinus
ENSSFOG00015011774	a1cf	100	79.270	ENSECAG00000010424	A1CF	100	79.104	Equus_caballus
ENSSFOG00015011774	a1cf	71	91.339	ENSEEUG00000000013	A1CF	78	91.339	Erinaceus_europaeus
ENSSFOG00015011774	a1cf	100	86.921	ENSELUG00000003159	a1cf	100	86.589	Esox_lucius
ENSSFOG00015011774	a1cf	100	79.328	ENSFCAG00000011179	A1CF	100	79.496	Felis_catus
ENSSFOG00015011774	a1cf	100	82.017	ENSFALG00000013183	A1CF	100	81.681	Ficedula_albicollis
ENSSFOG00015011774	a1cf	100	79.496	ENSFDAG00000019371	A1CF	100	79.328	Fukomys_damarensis
ENSSFOG00015011774	a1cf	100	75.534	ENSFHEG00000019652	a1cf	96	85.938	Fundulus_heteroclitus
ENSSFOG00015011774	a1cf	100	75.902	ENSGMOG00000018943	a1cf	100	75.902	Gadus_morhua
ENSSFOG00015011774	a1cf	95	80.210	ENSGALG00000003765	A1CF	96	79.860	Gallus_gallus
ENSSFOG00015011774	a1cf	100	76.325	ENSGAFG00000014868	a1cf	100	76.159	Gambusia_affinis
ENSSFOG00015011774	a1cf	100	80.656	ENSGACG00000010241	a1cf	100	80.820	Gasterosteus_aculeatus
ENSSFOG00015011774	a1cf	95	78.571	ENSGAGG00000016508	A1CF	97	78.223	Gopherus_agassizii
ENSSFOG00015011774	a1cf	100	79.270	ENSGGOG00000009670	A1CF	100	79.104	Gorilla_gorilla
ENSSFOG00015011774	a1cf	100	83.196	ENSHBUG00000021959	a1cf	100	83.855	Haplochromis_burtoni
ENSSFOG00015011774	a1cf	100	78.773	ENSHGLG00000008955	A1CF	100	78.607	Heterocephalus_glaber_female
ENSSFOG00015011774	a1cf	100	78.109	ENSHGLG00100000518	A1CF	100	77.944	Heterocephalus_glaber_male
ENSSFOG00015011774	a1cf	93	77.670	ENSHCOG00000017669	a1cf	100	75.243	Hippocampus_comes
ENSSFOG00015011774	a1cf	93	90.619	ENSIPUG00000010367	a1cf	95	90.226	Ictalurus_punctatus
ENSSFOG00015011774	a1cf	100	81.463	ENSKMAG00000006568	a1cf	100	82.439	Kryptolebias_marmoratus
ENSSFOG00015011774	a1cf	99	81.656	ENSLBEG00000020994	a1cf	98	81.863	Labrus_bergylta
ENSSFOG00015011774	a1cf	100	83.389	ENSLACG00000008061	A1CF	100	83.054	Latimeria_chalumnae
ENSSFOG00015011774	a1cf	100	86.755	ENSLOCG00000006302	a1cf	100	86.093	Lepisosteus_oculatus
ENSSFOG00015011774	a1cf	100	78.773	ENSLAFG00000015462	A1CF	100	79.104	Loxodonta_africana
ENSSFOG00015011774	a1cf	100	79.832	ENSMFAG00000035948	A1CF	100	79.832	Macaca_fascicularis
ENSSFOG00015011774	a1cf	100	79.832	ENSMMUG00000007077	A1CF	100	79.832	Macaca_mulatta
ENSSFOG00015011774	a1cf	100	79.496	ENSMNEG00000031454	A1CF	100	79.496	Macaca_nemestrina
ENSSFOG00015011774	a1cf	100	78.441	ENSMLEG00000037223	A1CF	100	78.441	Mandrillus_leucophaeus
ENSSFOG00015011774	a1cf	100	82.479	ENSMAMG00000010402	a1cf	100	83.663	Mastacembelus_armatus
ENSSFOG00015011774	a1cf	100	82.178	ENSMZEG00005013245	a1cf	100	81.878	Maylandia_zebra
ENSSFOG00015011774	a1cf	100	79.636	ENSMGAG00000001507	A1CF	100	79.305	Meleagris_gallopavo
ENSSFOG00015011774	a1cf	100	77.778	ENSMAUG00000007422	A1cf	100	77.612	Mesocricetus_auratus
ENSSFOG00015011774	a1cf	100	79.664	ENSMICG00000003377	A1CF	100	80.504	Microcebus_murinus
ENSSFOG00015011774	a1cf	100	79.104	ENSMOCG00000021536	A1cf	100	78.939	Microtus_ochrogaster
ENSSFOG00015011774	a1cf	93	81.238	ENSMMOG00000009422	a1cf	100	73.927	Mola_mola
ENSSFOG00015011774	a1cf	93	83.130	ENSMODG00000016478	A1CF	96	83.301	Monodelphis_domestica
ENSSFOG00015011774	a1cf	100	79.097	ENSMALG00000012992	a1cf	100	79.097	Monopterus_albus
ENSSFOG00015011774	a1cf	100	78.487	MGP_CAROLIEiJ_G0022873	A1cf	100	78.487	Mus_caroli
ENSSFOG00015011774	a1cf	100	78.487	ENSMUSG00000052595	A1cf	99	84.281	Mus_musculus
ENSSFOG00015011774	a1cf	100	78.319	MGP_PahariEiJ_G0014366	A1cf	100	78.319	Mus_pahari
ENSSFOG00015011774	a1cf	100	78.319	MGP_SPRETEiJ_G0023792	A1cf	100	78.319	Mus_spretus
ENSSFOG00015011774	a1cf	100	73.798	ENSMPUG00000016971	A1CF	100	73.964	Mustela_putorius_furo
ENSSFOG00015011774	a1cf	100	79.104	ENSMLUG00000016071	A1CF	100	79.602	Myotis_lucifugus
ENSSFOG00015011774	a1cf	100	78.939	ENSNGAG00000015136	A1cf	100	78.939	Nannospalax_galili
ENSSFOG00015011774	a1cf	100	83.031	ENSNBRG00000001712	a1cf	100	83.690	Neolamprologus_brichardi
ENSSFOG00015011774	a1cf	100	79.436	ENSNLEG00000012028	A1CF	100	79.436	Nomascus_leucogenys
ENSSFOG00015011774	a1cf	94	80.605	ENSMEUG00000015909	A1CF	100	80.249	Notamacropus_eugenii
ENSSFOG00015011774	a1cf	86	85.572	ENSOPRG00000010667	A1CF	86	85.572	Ochotona_princeps
ENSSFOG00015011774	a1cf	100	83.690	ENSONIG00000019105	a1cf	100	83.690	Oreochromis_niloticus
ENSSFOG00015011774	a1cf	87	81.425	ENSOANG00000007360	A1CF	99	81.425	Ornithorhynchus_anatinus
ENSSFOG00015011774	a1cf	100	79.328	ENSOCUG00000011587	A1CF	100	79.496	Oryctolagus_cuniculus
ENSSFOG00015011774	a1cf	100	79.058	ENSORLG00000013342	a1cf	100	78.699	Oryzias_latipes
ENSSFOG00015011774	a1cf	100	79.870	ENSORLG00020000586	a1cf	100	80.227	Oryzias_latipes_hni
ENSSFOG00015011774	a1cf	100	79.870	ENSORLG00015018569	a1cf	100	80.227	Oryzias_latipes_hsok
ENSSFOG00015011774	a1cf	100	81.683	ENSOMEG00000013531	a1cf	100	81.488	Oryzias_melastigma
ENSSFOG00015011774	a1cf	100	77.114	ENSOGAG00000012884	A1CF	100	78.109	Otolemur_garnettii
ENSSFOG00015011774	a1cf	100	79.768	ENSOARG00000013695	A1CF	100	79.436	Ovis_aries
ENSSFOG00015011774	a1cf	93	83.333	ENSPPAG00000028115	A1CF	99	83.333	Pan_paniscus
ENSSFOG00015011774	a1cf	100	78.607	ENSPPRG00000012180	A1CF	100	78.773	Panthera_pardus
ENSSFOG00015011774	a1cf	100	78.607	ENSPTIG00000021223	A1CF	100	78.773	Panthera_tigris_altaica
ENSSFOG00015011774	a1cf	100	80.504	ENSPTRG00000002508	A1CF	100	80.336	Pan_troglodytes
ENSSFOG00015011774	a1cf	100	79.832	ENSPANG00000021988	A1CF	100	79.832	Papio_anubis
ENSSFOG00015011774	a1cf	100	89.570	ENSPKIG00000025176	a1cf	100	89.073	Paramormyrops_kingsleyae
ENSSFOG00015011774	a1cf	100	80.000	ENSPSIG00000010318	A1CF	100	79.664	Pelodiscus_sinensis
ENSSFOG00015011774	a1cf	96	75.787	ENSPMGG00000013359	a1cf	99	72.867	Periophthalmus_magnuspinnatus
ENSSFOG00015011774	a1cf	100	78.441	ENSPEMG00000015021	A1cf	100	78.607	Peromyscus_maniculatus_bairdii
ENSSFOG00015011774	a1cf	100	79.832	ENSPCIG00000002175	A1CF	100	80.336	Phascolarctos_cinereus
ENSSFOG00015011774	a1cf	100	81.006	ENSPFOG00000006683	a1cf	100	81.656	Poecilia_formosa
ENSSFOG00015011774	a1cf	100	81.006	ENSPFOG00000007437	-	100	81.656	Poecilia_formosa
ENSSFOG00015011774	a1cf	100	81.908	ENSPLAG00000000026	a1cf	100	82.566	Poecilia_latipinna
ENSSFOG00015011774	a1cf	100	81.908	ENSPLAG00000001210	-	100	82.566	Poecilia_latipinna
ENSSFOG00015011774	a1cf	100	73.927	ENSPMEG00000000921	a1cf	100	74.587	Poecilia_mexicana
ENSSFOG00015011774	a1cf	100	72.964	ENSPMEG00000015529	-	100	73.616	Poecilia_mexicana
ENSSFOG00015011774	a1cf	100	80.519	ENSPREG00000016298	a1cf	100	81.169	Poecilia_reticulata
ENSSFOG00015011774	a1cf	100	80.336	ENSPPYG00000002819	A1CF	100	80.336	Pongo_abelii
ENSSFOG00015011774	a1cf	77	93.976	ENSPCAG00000006463	A1CF	79	64.482	Procavia_capensis
ENSSFOG00015011774	a1cf	100	77.944	ENSPCOG00000024172	A1CF	100	78.773	Propithecus_coquereli
ENSSFOG00015011774	a1cf	100	82.439	ENSPNYG00000017944	a1cf	100	83.089	Pundamilia_nyererei
ENSSFOG00015011774	a1cf	100	90.940	ENSPNAG00000007704	a1cf	100	90.940	Pygocentrus_nattereri
ENSSFOG00015011774	a1cf	100	78.824	ENSRNOG00000033195	A1cf	100	78.824	Rattus_norvegicus
ENSSFOG00015011774	a1cf	100	73.223	ENSRBIG00000042892	A1CF	100	78.278	Rhinopithecus_bieti
ENSSFOG00015011774	a1cf	100	78.773	ENSRROG00000041398	A1CF	99	79.893	Rhinopithecus_roxellana
ENSSFOG00015011774	a1cf	100	79.436	ENSSBOG00000021930	A1CF	100	80.039	Saimiri_boliviensis_boliviensis
ENSSFOG00015011774	a1cf	100	80.336	ENSSHAG00000005096	A1CF	100	80.000	Sarcophilus_harrisii
ENSSFOG00015011774	a1cf	100	80.389	ENSSMAG00000013271	a1cf	100	81.331	Scophthalmus_maximus
ENSSFOG00015011774	a1cf	100	82.266	ENSSDUG00000013930	a1cf	100	82.102	Seriola_dumerili
ENSSFOG00015011774	a1cf	100	78.464	ENSSLDG00000004290	a1cf	100	78.297	Seriola_lalandi_dorsalis
ENSSFOG00015011774	a1cf	94	90.058	ENSSARG00000005940	A1CF	86	89.535	Sorex_araneus
ENSSFOG00015011774	a1cf	95	78.261	ENSSPUG00000006797	A1CF	95	76.531	Sphenodon_punctatus
ENSSFOG00015011774	a1cf	100	80.100	ENSSSCG00000010431	A1CF	100	79.768	Sus_scrofa
ENSSFOG00015011774	a1cf	100	81.260	ENSTGUG00000005090	A1CF	100	80.597	Taeniopygia_guttata
ENSSFOG00015011774	a1cf	100	78.930	ENSTRUG00000001982	a1cf	100	78.768	Takifugu_rubripes
ENSSFOG00015011774	a1cf	100	79.288	ENSTNIG00000003580	a1cf	100	79.126	Tetraodon_nigroviridis
ENSSFOG00015011774	a1cf	98	74.614	ENSTTRG00000013190	A1CF	96	74.271	Tursiops_truncatus
ENSSFOG00015011774	a1cf	100	79.664	ENSUAMG00000020065	A1CF	100	79.496	Ursus_americanus
ENSSFOG00015011774	a1cf	100	78.275	ENSUMAG00000011162	A1CF	100	78.275	Ursus_maritimus
ENSSFOG00015011774	a1cf	87	77.992	ENSVPAG00000006130	A1CF	86	77.992	Vicugna_pacos
ENSSFOG00015011774	a1cf	100	79.832	ENSVVUG00000002504	A1CF	100	79.664	Vulpes_vulpes
ENSSFOG00015011774	a1cf	100	74.172	ENSXETG00000006611	a1cf	100	73.675	Xenopus_tropicalis
ENSSFOG00015011774	a1cf	100	83.444	ENSXCOG00000003302	a1cf	100	83.278	Xiphophorus_couchianus
ENSSFOG00015011774	a1cf	100	82.353	ENSXMAG00000016703	a1cf	100	82.190	Xiphophorus_maculatus