EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015012015 (Gene tree)
Gene ID: 108937877
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 11594 bases
Position: chrKV411151.1:658817-670410
Accession: 108937877
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015018811	RRM_1	PF00076.22	1.2e-13	1	1
ENSSFOP00015018759	RRM_1	PF00076.22	1.7e-13	1	1
ENSSFOP00015018781	RRM_1	PF00076.22	1.7e-13	1	1
ENSSFOP00015018722	RRM_1	PF00076.22	1.8e-13	1	1
ENSSFOP00015018745	RRM_1	PF00076.22	1.8e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015018958	-	3576	-	ENSSFOP00015018745	332 (aa)	-	-
ENSSFOT00015018935	-	3610	-	ENSSFOP00015018722	332 (aa)	-	-
ENSSFOT00015019024	-	786	-	ENSSFOP00015018811	261 (aa)	-	-
ENSSFOT00015018994	-	3229	XM_018758083	ENSSFOP00015018781	331 (aa)	XP_018613599	A0A1W5AKP3
ENSSFOT00015018972	-	3263	XM_018758079	ENSSFOP00015018759	331 (aa)	XP_018613595	A0A1W5AKP3

Gene Model

Click here to download ENSSFOG00015012015's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015012015's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015012015	-	80	55.157	ENSSFOG00015009401	-	73	56.019
ENSSFOG00015012015	-	82	84.475	ENSSFOG00015012924	-	81	95.000
ENSSFOG00015012015	-	99	46.617	ENSSFOG00015012304	raly	86	50.000
ENSSFOG00015012015	-	80	52.915	ENSSFOG00015004575	-	74	50.442

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015012015	-	99	50.558	ENSG00000184672	RALYL	92	76.923	Homo_sapiens
ENSSFOG00015012015	-	81	88.679	ENSAPOG00000006963	hnrnpc	83	77.567	Acanthochromis_polyacanthus
ENSSFOG00015012015	-	99	80.769	ENSACIG00000000270	-	99	79.615	Amphilophus_citrinellus
ENSSFOG00015012015	-	99	79.167	ENSACIG00000016568	-	99	79.545	Amphilophus_citrinellus
ENSSFOG00015012015	-	86	83.111	ENSAOCG00000021616	-	83	77.491	Amphiprion_ocellaris
ENSSFOG00015012015	-	81	88.679	ENSAOCG00000003896	-	83	77.186	Amphiprion_ocellaris
ENSSFOG00015012015	-	99	72.355	ENSAPEG00000019962	-	85	77.860	Amphiprion_percula
ENSSFOG00015012015	-	81	88.679	ENSAPEG00000001489	-	83	77.186	Amphiprion_percula
ENSSFOG00015012015	-	83	85.185	ENSATEG00000018006	-	96	72.524	Anabas_testudineus
ENSSFOG00015012015	-	82	85.981	ENSATEG00000011734	-	85	77.778	Anabas_testudineus
ENSSFOG00015012015	-	80	53.982	ENSAPLG00000015574	RALYL	78	53.750	Anas_platyrhynchos
ENSSFOG00015012015	-	80	53.097	ENSACAG00000028464	RALYL	79	53.252	Anolis_carolinensis
ENSSFOG00015012015	-	99	49.254	ENSANAG00000023383	RALYL	78	54.667	Aotus_nancymaae
ENSSFOG00015012015	-	83	84.475	ENSACLG00000000995	-	81	84.475	Astatotilapia_calliptera
ENSSFOG00015012015	-	80	85.646	ENSACLG00000013636	-	86	76.046	Astatotilapia_calliptera
ENSSFOG00015012015	-	82	86.111	ENSACLG00000005707	-	90	76.190	Astatotilapia_calliptera
ENSSFOG00015012015	-	82	86.047	ENSAMXG00000034915	zgc:55733	91	72.119	Astyanax_mexicanus
ENSSFOG00015012015	-	74	78.756	ENSAMXG00000042946	hnrnpc	97	73.298	Astyanax_mexicanus
ENSSFOG00015012015	-	99	50.186	ENSCJAG00000000402	RALYL	78	54.667	Callithrix_jacchus
ENSSFOG00015012015	-	97	50.000	ENSCPOG00000012314	RALYL	79	53.252	Cavia_porcellus
ENSSFOG00015012015	-	97	53.257	ENSCCAG00000025003	RALYL	76	76.923	Cebus_capucinus
ENSSFOG00015012015	-	99	50.558	ENSCATG00000042145	RALYL	78	54.667	Cercocebus_atys
ENSSFOG00015012015	-	99	47.500	ENSCLAG00000005228	RALYL	79	53.252	Chinchilla_lanigera
ENSSFOG00015012015	-	80	53.097	ENSCHOG00000013228	RALYL	75	51.452	Choloepus_hoffmanni
ENSSFOG00015012015	-	80	58.879	ENSCANG00000039144	RALYL	78	54.667	Colobus_angolensis_palliatus
ENSSFOG00015012015	-	99	46.763	ENSCGRG00001009241	Ralyl	79	54.065	Cricetulus_griseus_chok1gshd
ENSSFOG00015012015	-	97	67.742	ENSCSEG00000021349	-	89	68.459	Cynoglossus_semilaevis
ENSSFOG00015012015	-	83	74.886	ENSCSEG00000019769	-	90	62.921	Cynoglossus_semilaevis
ENSSFOG00015012015	-	81	83.178	ENSCVAG00000016981	-	100	68.373	Cyprinodon_variegatus
ENSSFOG00015012015	-	82	70.093	ENSCVAG00000002797	-	86	63.985	Cyprinodon_variegatus
ENSSFOG00015012015	-	82	88.372	ENSDARG00000103845	zgc:55733	99	72.281	Danio_rerio
ENSSFOG00015012015	-	93	73.123	ENSDARG00000053810	hnrnpc	82	75.277	Danio_rerio
ENSSFOG00015012015	-	99	48.043	ENSDORG00000003721	Ralyl	79	53.659	Dipodomys_ordii
ENSSFOG00015012015	-	62	55.747	ENSETEG00000014028	RALYL	82	60.494	Echinops_telfairi
ENSSFOG00015012015	-	80	50.935	ENSEBUG00000006049	RALYL	74	48.148	Eptatretus_burgeri
ENSSFOG00015012015	-	95	44.788	ENSEBUG00000012363	hnrnpc	67	46.288	Eptatretus_burgeri
ENSSFOG00015012015	-	99	47.687	ENSEEUG00000007202	RALYL	80	54.694	Erinaceus_europaeus
ENSSFOG00015012015	-	82	87.963	ENSELUG00000004132	-	91	79.927	Esox_lucius
ENSSFOG00015012015	-	82	83.843	ENSELUG00000007714	-	93	76.978	Esox_lucius
ENSSFOG00015012015	-	97	49.071	ENSFALG00000008647	RALYL	96	55.804	Ficedula_albicollis
ENSSFOG00015012015	-	82	77.826	ENSFHEG00000007278	-	82	71.014	Fundulus_heteroclitus
ENSSFOG00015012015	-	95	71.591	ENSFHEG00000003605	-	84	71.374	Fundulus_heteroclitus
ENSSFOG00015012015	-	80	58.685	ENSGALG00000036938	RALYL	77	54.167	Gallus_gallus
ENSSFOG00015012015	-	99	74.275	ENSGAFG00000020992	-	99	73.913	Gambusia_affinis
ENSSFOG00015012015	-	98	69.403	ENSGAFG00000020486	-	91	72.428	Gambusia_affinis
ENSSFOG00015012015	-	82	83.410	ENSGACG00000017772	-	97	75.581	Gasterosteus_aculeatus
ENSSFOG00015012015	-	86	69.432	ENSGACG00000018932	-	90	68.304	Gasterosteus_aculeatus
ENSSFOG00015012015	-	99	50.558	ENSGGOG00000000841	RALYL	78	54.667	Gorilla_gorilla
ENSSFOG00015012015	-	80	86.124	ENSHBUG00000018342	-	98	67.665	Haplochromis_burtoni
ENSSFOG00015012015	-	95	74.462	ENSHBUG00000010527	-	84	76.557	Haplochromis_burtoni
ENSSFOG00015012015	-	99	47.500	ENSHGLG00000004866	RALYL	79	53.252	Heterocephalus_glaber_female
ENSSFOG00015012015	-	99	47.500	ENSHGLG00100017480	RALYL	79	53.252	Heterocephalus_glaber_male
ENSSFOG00015012015	-	82	79.825	ENSHCOG00000012333	hnrnpc	91	71.378	Hippocampus_comes
ENSSFOG00015012015	-	92	75.200	ENSIPUG00000011271	hnrnpc	98	79.825	Ictalurus_punctatus
ENSSFOG00015012015	-	82	86.047	ENSIPUG00000008666	zgc:55733	100	79.565	Ictalurus_punctatus
ENSSFOG00015012015	-	99	47.687	ENSSTOG00000012583	RALYL	80	53.659	Ictidomys_tridecemlineatus
ENSSFOG00015012015	-	96	70.400	ENSKMAG00000011170	-	99	66.071	Kryptolebias_marmoratus
ENSSFOG00015012015	-	81	85.915	ENSKMAG00000018265	-	83	76.753	Kryptolebias_marmoratus
ENSSFOG00015012015	-	92	75.238	ENSLBEG00000006193	-	84	74.908	Labrus_bergylta
ENSSFOG00015012015	-	98	67.626	ENSLBEG00000024418	-	86	68.284	Labrus_bergylta
ENSSFOG00015012015	-	95	73.180	ENSLBEG00000006979	-	85	76.285	Labrus_bergylta
ENSSFOG00015012015	-	81	77.626	ENSLOCG00000002560	hnrnpc	96	72.222	Lepisosteus_oculatus
ENSSFOG00015012015	-	99	50.558	ENSMNEG00000033288	RALYL	78	54.667	Macaca_nemestrina
ENSSFOG00015012015	-	99	50.558	ENSMLEG00000038284	RALYL	78	54.667	Mandrillus_leucophaeus
ENSSFOG00015012015	-	84	83.562	ENSMAMG00000008033	-	90	78.229	Mastacembelus_armatus
ENSSFOG00015012015	-	94	76.518	ENSMAMG00000012236	-	97	68.421	Mastacembelus_armatus
ENSSFOG00015012015	-	90	79.498	ENSMZEG00005020460	-	88	75.094	Maylandia_zebra
ENSSFOG00015012015	-	95	74.154	ENSMZEG00005024249	-	84	76.190	Maylandia_zebra
ENSSFOG00015012015	-	99	46.763	ENSMAUG00000015149	Ralyl	79	54.065	Mesocricetus_auratus
ENSSFOG00015012015	-	80	57.944	ENSMICG00000005558	RALYL	79	76.923	Microcebus_murinus
ENSSFOG00015012015	-	80	53.982	ENSMOCG00000017371	Ralyl	79	54.065	Microtus_ochrogaster
ENSSFOG00015012015	-	82	88.785	ENSMMOG00000021465	-	89	78.244	Mola_mola
ENSSFOG00015012015	-	100	77.011	ENSMMOG00000019520	-	86	80.357	Mola_mola
ENSSFOG00015012015	-	81	81.043	ENSMALG00000007520	-	85	70.115	Monopterus_albus
ENSSFOG00015012015	-	82	82.326	ENSMALG00000014623	-	84	73.801	Monopterus_albus
ENSSFOG00015012015	-	99	46.403	ENSMUSG00000039717	Ralyl	92	75.641	Mus_musculus
ENSSFOG00015012015	-	80	56.195	ENSMPUG00000010724	RALYL	79	53.252	Mustela_putorius_furo
ENSSFOG00015012015	-	99	47.331	ENSNGAG00000013375	Ralyl	79	54.065	Nannospalax_galili
ENSSFOG00015012015	-	100	76.895	ENSNBRG00000015676	-	90	76.172	Neolamprologus_brichardi
ENSSFOG00015012015	-	85	83.556	ENSNBRG00000004912	-	99	72.653	Neolamprologus_brichardi
ENSSFOG00015012015	-	80	58.879	ENSNLEG00000002702	RALYL	74	54.667	Nomascus_leucogenys
ENSSFOG00015012015	-	69	49.485	ENSOPRG00000013650	-	98	46.305	Ochotona_princeps
ENSSFOG00015012015	-	80	54.222	ENSODEG00000001012	RALYL	79	53.252	Octodon_degus
ENSSFOG00015012015	-	95	74.462	ENSONIG00000018350	-	84	76.557	Oreochromis_niloticus
ENSSFOG00015012015	-	80	87.081	ENSONIG00000007859	-	92	74.170	Oreochromis_niloticus
ENSSFOG00015012015	-	82	74.299	ENSORLG00000009999	-	83	66.412	Oryzias_latipes
ENSSFOG00015012015	-	81	82.805	ENSORLG00000003144	-	82	74.910	Oryzias_latipes
ENSSFOG00015012015	-	82	73.832	ENSORLG00020018228	hnrnpc	83	66.031	Oryzias_latipes_hni
ENSSFOG00015012015	-	82	74.299	ENSORLG00015019755	-	83	66.412	Oryzias_latipes_hsok
ENSSFOG00015012015	-	81	82.805	ENSORLG00015009460	-	100	68.437	Oryzias_latipes_hsok
ENSSFOG00015012015	-	82	75.701	ENSOMEG00000020488	-	83	67.557	Oryzias_melastigma
ENSSFOG00015012015	-	81	85.981	ENSOMEG00000022665	-	83	77.206	Oryzias_melastigma
ENSSFOG00015012015	-	99	50.558	ENSPPAG00000038705	RALYL	78	54.667	Pan_paniscus
ENSSFOG00015012015	-	80	59.624	ENSPPRG00000018612	RALYL	78	56.118	Panthera_pardus
ENSSFOG00015012015	-	80	59.624	ENSPTIG00000020331	RALYL	78	56.118	Panthera_tigris_altaica
ENSSFOG00015012015	-	99	50.558	ENSPTRG00000020381	RALYL	78	54.667	Pan_troglodytes
ENSSFOG00015012015	-	99	50.558	ENSPANG00000029305	RALYL	78	54.667	Papio_anubis
ENSSFOG00015012015	-	92	81.935	ENSPKIG00000022837	-	97	82.258	Paramormyrops_kingsleyae
ENSSFOG00015012015	-	95	80.564	ENSPKIG00000008592	-	100	78.056	Paramormyrops_kingsleyae
ENSSFOG00015012015	-	97	50.000	ENSPSIG00000011135	RALYL	80	52.869	Pelodiscus_sinensis
ENSSFOG00015012015	-	99	79.008	ENSPMGG00000013144	-	99	75.573	Periophthalmus_magnuspinnatus
ENSSFOG00015012015	-	99	60.000	ENSPMGG00000017774	-	93	62.009	Periophthalmus_magnuspinnatus
ENSSFOG00015012015	-	99	46.763	ENSPEMG00000016447	Ralyl	79	54.065	Peromyscus_maniculatus_bairdii
ENSSFOG00015012015	-	80	55.507	ENSPMAG00000002407	RALYL	97	54.222	Petromyzon_marinus
ENSSFOG00015012015	-	81	84.507	ENSPFOG00000002643	-	100	67.178	Poecilia_formosa
ENSSFOG00015012015	-	80	82.381	ENSPFOG00000001583	-	93	66.434	Poecilia_formosa
ENSSFOG00015012015	-	80	81.818	ENSPLAG00000015305	-	93	65.965	Poecilia_latipinna
ENSSFOG00015012015	-	81	84.507	ENSPLAG00000000061	-	82	75.646	Poecilia_latipinna
ENSSFOG00015012015	-	95	71.591	ENSPMEG00000004802	-	93	66.667	Poecilia_mexicana
ENSSFOG00015012015	-	81	84.038	ENSPMEG00000016524	-	82	75.277	Poecilia_mexicana
ENSSFOG00015012015	-	83	82.488	ENSPREG00000001852	-	89	75.277	Poecilia_reticulata
ENSSFOG00015012015	-	80	82.297	ENSPREG00000007928	-	84	70.992	Poecilia_reticulata
ENSSFOG00015012015	-	80	47.393	ENSPPYG00000018710	-	69	71.845	Pongo_abelii
ENSSFOG00015012015	-	80	53.778	ENSPVAG00000010821	RALYL	77	53.478	Pteropus_vampyrus
ENSSFOG00015012015	-	100	75.801	ENSPNYG00000003747	-	90	76.557	Pundamilia_nyererei
ENSSFOG00015012015	-	81	88.152	ENSPNYG00000020293	-	88	75.379	Pundamilia_nyererei
ENSSFOG00015012015	-	82	78.605	ENSPNAG00000015686	hnrnpc	89	74.539	Pygocentrus_nattereri
ENSSFOG00015012015	-	82	81.448	ENSPNAG00000019200	zgc:55733	86	69.343	Pygocentrus_nattereri
ENSSFOG00015012015	-	99	50.558	ENSRROG00000023925	RALYL	81	75.000	Rhinopithecus_roxellana
ENSSFOG00015012015	-	100	75.092	ENSSMAG00000011147	-	96	77.947	Scophthalmus_maximus
ENSSFOG00015012015	-	81	83.962	ENSSMAG00000013592	-	76	78.243	Scophthalmus_maximus
ENSSFOG00015012015	-	95	74.534	ENSSDUG00000006730	-	84	76.471	Seriola_dumerili
ENSSFOG00015012015	-	97	75.391	ENSSDUG00000001723	-	83	78.707	Seriola_dumerili
ENSSFOG00015012015	-	82	84.722	ENSSLDG00000007474	-	92	76.103	Seriola_lalandi_dorsalis
ENSSFOG00015012015	-	96	75.862	ENSSLDG00000007454	-	84	79.087	Seriola_lalandi_dorsalis
ENSSFOG00015012015	-	52	71.845	ENSSARG00000002374	RALYL	80	44.541	Sorex_araneus
ENSSFOG00015012015	-	95	74.923	ENSSPAG00000013996	-	84	76.384	Stegastes_partitus
ENSSFOG00015012015	-	98	74.254	ENSSPAG00000023204	-	83	79.087	Stegastes_partitus
ENSSFOG00015012015	-	97	49.442	ENSTGUG00000011689	RALYL	78	54.167	Taeniopygia_guttata
ENSSFOG00015012015	-	83	82.028	ENSTRUG00000020158	-	84	73.180	Takifugu_rubripes
ENSSFOG00015012015	-	80	77.315	ENSTNIG00000007427	-	84	70.943	Tetraodon_nigroviridis
ENSSFOG00015012015	-	82	75.576	ENSTNIG00000000334	-	94	66.667	Tetraodon_nigroviridis
ENSSFOG00015012015	-	80	47.321	ENSTBEG00000005551	RALYL	89	48.472	Tupaia_belangeri
ENSSFOG00015012015	-	99	45.423	ENSTTRG00000015762	RALYL	78	52.609	Tursiops_truncatus
ENSSFOG00015012015	-	80	53.241	ENSVPAG00000008501	RALYL	78	52.119	Vicugna_pacos
ENSSFOG00015012015	-	99	65.056	ENSXCOG00000006552	-	82	67.829	Xiphophorus_couchianus
ENSSFOG00015012015	-	59	82.716	ENSXCOG00000019434	-	71	81.437	Xiphophorus_couchianus
ENSSFOG00015012015	-	81	83.568	ENSXMAG00000022849	-	86	74.908	Xiphophorus_maculatus
ENSSFOG00015012015	-	98	70.149	ENSXMAG00000009333	-	93	65.614	Xiphophorus_maculatus