EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015012088 (Gene tree)
Gene ID: 108918113
Gene Symbol: rab42
Alias: -
Full Name: RAB42%2C member RAS oncogene family
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 3668 bases
Position: chrKV411250.1:361765-365432
Accession: 108918113
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015018817	MMR_HSR1	PF01926.23	3.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015019030	-	672	XM_018725122	ENSSFOP00015018817	223 (aa)	XP_018580638	A0A0P7WP98

Gene Model

Click here to download ENSSFOG00015012088's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015012088's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015012088	rab42	93	38.462	ENSSFOG00015021754	rab13	96	38.462
ENSSFOG00015012088	rab42	93	35.749	ENSSFOG00015002077	rab6a	97	35.749
ENSSFOG00015012088	rab42	99	39.189	ENSSFOG00015012785	rab14	99	39.189
ENSSFOG00015012088	rab42	75	32.335	ENSSFOG00015023790	rheb	87	32.335
ENSSFOG00015012088	rab42	74	31.765	ENSSFOG00015004613	rasd4	78	31.765
ENSSFOG00015012088	rab42	74	34.756	ENSSFOG00015009988	-	73	34.756
ENSSFOG00015012088	rab42	88	38.191	ENSSFOG00015008657	rab25a	90	38.660
ENSSFOG00015012088	rab42	79	39.773	ENSSFOG00015011140	-	84	39.773
ENSSFOG00015012088	rab42	83	30.159	ENSSFOG00015006245	-	82	30.159
ENSSFOG00015012088	rab42	92	41.429	ENSSFOG00015000865	-	95	41.429
ENSSFOG00015012088	rab42	94	33.178	ENSSFOG00015011771	-	96	33.178
ENSSFOG00015012088	rab42	71	36.478	ENSSFOG00015021115	-	72	36.478
ENSSFOG00015012088	rab42	95	33.649	ENSSFOG00015011268	RAB41	93	33.649
ENSSFOG00015012088	rab42	94	33.645	ENSSFOG00015005076	zgc:100918	96	33.645
ENSSFOG00015012088	rab42	79	40.341	ENSSFOG00015001293	rab1ab	85	40.341
ENSSFOG00015012088	rab42	85	58.730	ENSSFOG00015018421	rab39b	88	58.730
ENSSFOG00015012088	rab42	96	42.791	ENSSFOG00015009244	rab39bb	98	42.791
ENSSFOG00015012088	rab42	75	37.725	ENSSFOG00015005188	rab34	64	37.725
ENSSFOG00015012088	rab42	75	36.527	ENSSFOG00015004325	rab34a	64	36.527
ENSSFOG00015012088	rab42	78	33.333	ENSSFOG00015003051	hrasb	96	32.620
ENSSFOG00015012088	rab42	80	39.106	ENSSFOG00015021448	-	83	39.106
ENSSFOG00015012088	rab42	75	39.535	ENSSFOG00015010492	rab9b	83	39.535
ENSSFOG00015012088	rab42	79	38.636	ENSSFOG00015020836	rab1ba	86	38.636
ENSSFOG00015012088	rab42	71	36.076	ENSSFOG00015012604	rab23	74	35.669
ENSSFOG00015012088	rab42	77	40.116	ENSSFOG00015006076	rab35	83	40.116
ENSSFOG00015012088	rab42	70	32.692	ENSSFOG00015020319	mras	84	32.530
ENSSFOG00015012088	rab42	84	41.327	ENSSFOG00015004253	rab33a	85	41.327
ENSSFOG00015012088	rab42	97	36.000	ENSSFOG00015017296	rab15	100	36.000
ENSSFOG00015012088	rab42	78	33.908	ENSSFOG00015011157	-	96	33.155
ENSSFOG00015012088	rab42	96	33.645	ENSSFOG00015015336	rab4a	98	33.645
ENSSFOG00015012088	rab42	88	38.191	ENSSFOG00015006414	-	93	38.191
ENSSFOG00015012088	rab42	70	34.177	ENSSFOG00015016156	rab36	61	34.177
ENSSFOG00015012088	rab42	72	32.716	ENSSFOG00015020738	rabl2	68	32.716
ENSSFOG00015012088	rab42	85	61.053	ENSSFOG00015020732	rab42a	88	61.053
ENSSFOG00015012088	rab42	94	31.776	ENSSFOG00015021180	RAB7A	96	31.776
ENSSFOG00015012088	rab42	80	38.202	ENSSFOG00015008618	rab11al	81	38.202
ENSSFOG00015012088	rab42	72	33.537	ENSSFOG00015020074	DNAJC27	59	33.537
ENSSFOG00015012088	rab42	90	37.000	ENSSFOG00015009042	rab11bb	88	37.000
ENSSFOG00015012088	rab42	52	40.870	ENSSFOG00015014423	rras2	64	40.870
ENSSFOG00015012088	rab42	86	39.267	ENSSFOG00015005464	zgc:171927	88	39.267
ENSSFOG00015012088	rab42	78	38.983	ENSSFOG00015003259	rab9a	81	38.983
ENSSFOG00015012088	rab42	52	36.290	ENSSFOG00015010171	rabl3	53	36.290
ENSSFOG00015012088	rab42	96	46.977	ENSSFOG00015016000	-	95	46.977
ENSSFOG00015012088	rab42	95	33.649	ENSSFOG00015019202	RAB6B	94	33.649
ENSSFOG00015012088	rab42	74	35.366	ENSSFOG00015014517	rab5a	74	35.366
ENSSFOG00015012088	rab42	69	34.641	ENSSFOG00015006846	-	86	33.735
ENSSFOG00015012088	rab42	78	39.548	ENSSFOG00015000053	rab9a	79	39.548
ENSSFOG00015012088	rab42	96	53.521	ENSSFOG00015003628	-	99	53.521
ENSSFOG00015012088	rab42	88	40.102	ENSSFOG00015017444	rab18a	77	38.916
ENSSFOG00015012088	rab42	70	34.194	ENSSFOG00015023903	KRAS	86	33.735
ENSSFOG00015012088	rab42	83	33.690	ENSSFOG00015009566	si:dkey-13a21.4	82	35.260
ENSSFOG00015012088	rab42	90	41.584	ENSSFOG00015011318	-	92	41.584
ENSSFOG00015012088	rab42	88	40.704	ENSSFOG00015015034	rab2a	91	40.704
ENSSFOG00015012088	rab42	71	40.881	ENSSFOG00015004941	rab41	72	40.881
ENSSFOG00015012088	rab42	94	32.093	ENSSFOG00015020012	rab7a	96	32.093
ENSSFOG00015012088	rab42	76	39.412	ENSSFOG00015024034	rab33ba	81	39.412
ENSSFOG00015012088	rab42	85	31.313	ENSSFOG00015008777	rasd3	91	31.313
ENSSFOG00015012088	rab42	77	38.953	ENSSFOG00015020112	rab33b	77	38.953
ENSSFOG00015012088	rab42	71	32.911	ENSSFOG00015014992	rhebl1	84	32.911
ENSSFOG00015012088	rab42	68	40.789	ENSSFOG00015006175	zgc:101559	64	40.789
ENSSFOG00015012088	rab42	71	37.107	ENSSFOG00015012085	rab22a	80	37.107
ENSSFOG00015012088	rab42	77	32.000	ENSSFOG00015017512	dnajc27	63	32.000
ENSSFOG00015012088	rab42	86	30.882	ENSSFOG00015019261	rasl11a	78	30.882
ENSSFOG00015012088	rab42	90	35.323	ENSSFOG00015024042	rab11a	92	35.323

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015012088	rab42	96	69.302	ENSACIG00000016958	si:dkey-34d22.5	97	69.302	Amphilophus_citrinellus
ENSSFOG00015012088	rab42	96	71.628	ENSATEG00000010784	si:dkey-34d22.5	83	71.628	Anabas_testudineus
ENSSFOG00015012088	rab42	96	60.930	ENSCPBG00000011236	-	99	60.930	Chrysemys_picta_bellii
ENSSFOG00015012088	rab42	97	63.927	ENSCSEG00000019183	si:dkey-34d22.5	99	63.927	Cynoglossus_semilaevis
ENSSFOG00015012088	rab42	89	72.727	ENSCVAG00000017064	si:dkey-34d22.5	89	72.727	Cyprinodon_variegatus
ENSSFOG00015012088	rab42	83	47.826	ENSDARG00000100379	si:dkey-34d22.2	98	47.826	Danio_rerio
ENSSFOG00015012088	rab42	96	59.346	ENSFALG00000001373	-	98	59.346	Ficedula_albicollis
ENSSFOG00015012088	rab42	97	67.281	ENSFHEG00000012041	si:dkey-34d22.5	97	67.281	Fundulus_heteroclitus
ENSSFOG00015012088	rab42	96	58.879	ENSGALG00000000994	-	98	58.879	Gallus_gallus
ENSSFOG00015012088	rab42	96	68.837	ENSGAFG00000008183	si:dkey-34d22.5	97	68.837	Gambusia_affinis
ENSSFOG00015012088	rab42	92	59.709	ENSGAGG00000004918	-	100	59.709	Gopherus_agassizii
ENSSFOG00015012088	rab42	97	68.981	ENSHCOG00000015692	si:dkey-34d22.5	99	68.981	Hippocampus_comes
ENSSFOG00015012088	rab42	98	69.406	ENSKMAG00000012778	si:dkey-34d22.5	99	69.406	Kryptolebias_marmoratus
ENSSFOG00015012088	rab42	97	69.863	ENSLBEG00000002926	si:dkey-34d22.5	99	69.863	Labrus_bergylta
ENSSFOG00015012088	rab42	96	57.674	ENSLACG00000012674	si:dkey-34d22.5	99	57.674	Latimeria_chalumnae
ENSSFOG00015012088	rab42	96	68.372	ENSLOCG00000003467	si:dkey-34d22.5	99	71.163	Lepisosteus_oculatus
ENSSFOG00015012088	rab42	98	68.349	ENSMMOG00000006846	si:dkey-34d22.5	99	68.349	Mola_mola
ENSSFOG00015012088	rab42	98	66.818	ENSMALG00000013152	si:dkey-34d22.5	99	66.818	Monopterus_albus
ENSSFOG00015012088	rab42	98	70.642	ENSORLG00000014099	si:dkey-34d22.5	99	70.642	Oryzias_latipes
ENSSFOG00015012088	rab42	98	70.183	ENSORLG00020020277	si:dkey-34d22.5	99	70.183	Oryzias_latipes_hni
ENSSFOG00015012088	rab42	98	70.183	ENSORLG00015000142	si:dkey-34d22.5	99	70.183	Oryzias_latipes_hsok
ENSSFOG00015012088	rab42	89	74.747	ENSOMEG00000017958	si:dkey-34d22.5	99	69.725	Oryzias_melastigma
ENSSFOG00015012088	rab42	98	73.853	ENSPKIG00000021209	si:dkey-34d22.5	99	73.853	Paramormyrops_kingsleyae
ENSSFOG00015012088	rab42	88	63.452	ENSPSIG00000006606	-	97	63.452	Pelodiscus_sinensis
ENSSFOG00015012088	rab42	98	68.807	ENSPMGG00000001298	-	99	68.807	Periophthalmus_magnuspinnatus
ENSSFOG00015012088	rab42	96	58.140	ENSPCIG00000022399	-	95	58.140	Phascolarctos_cinereus
ENSSFOG00015012088	rab42	96	68.837	ENSPFOG00000014499	si:dkey-34d22.5	97	68.837	Poecilia_formosa
ENSSFOG00015012088	rab42	96	68.837	ENSPLAG00000007773	si:dkey-34d22.5	97	68.837	Poecilia_latipinna
ENSSFOG00015012088	rab42	98	68.349	ENSPMEG00000012932	si:dkey-34d22.5	97	68.837	Poecilia_mexicana
ENSSFOG00015012088	rab42	87	62.694	ENSSHAG00000008520	-	87	62.694	Sarcophilus_harrisii
ENSSFOG00015012088	rab42	97	69.863	ENSSLDG00000002646	si:dkey-34d22.5	99	69.863	Seriola_lalandi_dorsalis
ENSSFOG00015012088	rab42	97	71.233	ENSSPAG00000012955	si:dkey-34d22.5	99	71.233	Stegastes_partitus
ENSSFOG00015012088	rab42	96	46.262	ENSXETG00000020622	rab39a	98	46.262	Xenopus_tropicalis
ENSSFOG00015012088	rab42	96	68.837	ENSXCOG00000008410	si:dkey-34d22.5	97	68.837	Xiphophorus_couchianus
ENSSFOG00015012088	rab42	96	68.837	ENSXMAG00000029317	si:dkey-34d22.5	97	68.837	Xiphophorus_maculatus