EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015012445 (Gene tree)
Gene ID: 108924578
Gene Symbol: rbm47
Alias: si:ch211-241e15.2|wu:fj94a03
Full Name: RNA-binding protein 47-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 36963 bases
Position: chrKV410834.1:175358-212320
Accession: 108924578
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015019369	RRM_1	PF00076.22	1.1e-42	1	3
ENSSFOP00015019369	RRM_1	PF00076.22	1.1e-42	2	3
ENSSFOP00015019369	RRM_1	PF00076.22	1.1e-42	3	3
ENSSFOP00015019390	RRM_1	PF00076.22	1.3e-42	1	3
ENSSFOP00015019390	RRM_1	PF00076.22	1.3e-42	2	3
ENSSFOP00015019390	RRM_1	PF00076.22	1.3e-42	3	3
ENSSFOP00015019354	RRM_1	PF00076.22	1.7e-42	1	3
ENSSFOP00015019354	RRM_1	PF00076.22	1.7e-42	2	3
ENSSFOP00015019354	RRM_1	PF00076.22	1.7e-42	3	3
ENSSFOP00015019360	RRM_1	PF00076.22	2e-42	1	3
ENSSFOP00015019360	RRM_1	PF00076.22	2e-42	2	3
ENSSFOP00015019360	RRM_1	PF00076.22	2e-42	3	3
ENSSFOP00015019377	RRM_1	PF00076.22	2e-42	1	3
ENSSFOP00015019377	RRM_1	PF00076.22	2e-42	2	3
ENSSFOP00015019377	RRM_1	PF00076.22	2e-42	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015019616	-	1728	-	ENSSFOP00015019390	575 (aa)	-	-
ENSSFOT00015019586	-	5582	-	ENSSFOP00015019360	629 (aa)	-	-
ENSSFOT00015019579	-	5651	XM_018736073	ENSSFOP00015019354	614 (aa)	XP_018591589	-
ENSSFOT00015019595	-	5330	-	ENSSFOP00015019369	545 (aa)	-	-
ENSSFOT00015019603	-	5438	-	ENSSFOP00015019377	629 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015012445's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015012445's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015012445	rbm47	54	55.219	ENSSFOG00015010922	SYNCRIP	74	48.329
ENSSFOG00015012445	rbm47	98	78.716	ENSSFOG00015024101	RBM47	97	79.549
ENSSFOG00015012445	rbm47	58	54.375	ENSSFOG00015001916	hnrnpr	65	48.768
ENSSFOG00015012445	rbm47	54	71.672	ENSSFOG00015000087	rbm46	58	71.044
ENSSFOG00015012445	rbm47	80	55.172	ENSSFOG00015011774	a1cf	91	57.551
ENSSFOG00015012445	rbm47	57	53.165	ENSSFOG00015022078	syncrip	74	46.793

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015012445	rbm47	94	80.800	ENSG00000163694	RBM47	100	79.825	Homo_sapiens
ENSSFOG00015012445	rbm47	100	84.655	ENSAPOG00000011062	rbm47	100	84.143	Acanthochromis_polyacanthus
ENSSFOG00015012445	rbm47	94	74.087	ENSAMEG00000009672	RBM47	100	73.026	Ailuropoda_melanoleuca
ENSSFOG00015012445	rbm47	100	78.017	ENSACIG00000011531	rbm47	100	79.008	Amphilophus_citrinellus
ENSSFOG00015012445	rbm47	100	84.655	ENSAOCG00000022245	rbm47	100	83.887	Amphiprion_ocellaris
ENSSFOG00015012445	rbm47	100	84.655	ENSAPEG00000018304	rbm47	100	79.470	Amphiprion_percula
ENSSFOG00015012445	rbm47	100	79.572	ENSATEG00000018400	rbm47	100	79.077	Anabas_testudineus
ENSSFOG00015012445	rbm47	100	76.481	ENSAPLG00000013974	RBM47	100	76.311	Anas_platyrhynchos
ENSSFOG00015012445	rbm47	100	70.820	ENSACAG00000011833	RBM47	96	73.875	Anolis_carolinensis
ENSSFOG00015012445	rbm47	100	79.434	ENSANAG00000029440	RBM47	96	80.612	Aotus_nancymaae
ENSSFOG00015012445	rbm47	100	85.788	ENSACLG00000016902	rbm47	100	85.530	Astatotilapia_calliptera
ENSSFOG00015012445	rbm47	100	80.132	ENSAMXG00000021794	rbm47	94	85.897	Astyanax_mexicanus
ENSSFOG00015012445	rbm47	100	72.637	ENSBTAG00000002356	RBM47	100	74.007	Bos_taurus
ENSSFOG00015012445	rbm47	95	83.889	ENSCJAG00000019385	RBM47	96	81.378	Callithrix_jacchus
ENSSFOG00015012445	rbm47	94	74.035	ENSCAFG00000015898	RBM47	100	73.179	Canis_familiaris
ENSSFOG00015012445	rbm47	84	80.214	ENSCAFG00020010558	RBM47	94	80.879	Canis_lupus_dingo
ENSSFOG00015012445	rbm47	100	72.637	ENSCHIG00000026214	RBM47	100	74.007	Capra_hircus
ENSSFOG00015012445	rbm47	84	87.892	ENSTSYG00000033612	RBM47	93	86.726	Carlito_syrichta
ENSSFOG00015012445	rbm47	100	71.182	ENSCAPG00000008426	RBM47	100	67.769	Cavia_aperea
ENSSFOG00015012445	rbm47	100	77.887	ENSCPOG00000014100	RBM47	100	73.267	Cavia_porcellus
ENSSFOG00015012445	rbm47	99	54.003	ENSCCAG00000024397	-	99	53.925	Cebus_capucinus
ENSSFOG00015012445	rbm47	100	81.654	ENSCCAG00000030129	-	96	80.867	Cebus_capucinus
ENSSFOG00015012445	rbm47	94	80.800	ENSCATG00000042064	RBM47	96	81.026	Cercocebus_atys
ENSSFOG00015012445	rbm47	100	80.463	ENSCLAG00000001684	RBM47	93	81.912	Chinchilla_lanigera
ENSSFOG00015012445	rbm47	94	74.087	ENSCSAG00000017060	RBM47	100	73.191	Chlorocebus_sabaeus
ENSSFOG00015012445	rbm47	84	76.832	ENSCHOG00000011731	RBM47	88	74.945	Choloepus_hoffmanni
ENSSFOG00015012445	rbm47	100	74.836	ENSCPBG00000013831	RBM47	100	74.507	Chrysemys_picta_bellii
ENSSFOG00015012445	rbm47	94	84.034	ENSCANG00000019997	RBM47	96	81.026	Colobus_angolensis_palliatus
ENSSFOG00015012445	rbm47	100	72.112	ENSCGRG00001000623	-	90	82.275	Cricetulus_griseus_chok1gshd
ENSSFOG00015012445	rbm47	100	75.773	ENSCGRG00001020102	-	90	81.232	Cricetulus_griseus_chok1gshd
ENSSFOG00015012445	rbm47	100	75.258	ENSCGRG00000014760	-	90	81.232	Cricetulus_griseus_crigri
ENSSFOG00015012445	rbm47	100	71.287	ENSCGRG00000007762	-	89	85.714	Cricetulus_griseus_crigri
ENSSFOG00015012445	rbm47	94	77.700	ENSCSEG00000004545	rbm47	100	76.073	Cynoglossus_semilaevis
ENSSFOG00015012445	rbm47	100	77.011	ENSCVAG00000020144	rbm47	100	77.815	Cyprinodon_variegatus
ENSSFOG00015012445	rbm47	100	81.032	ENSDARG00000061985	rbm47	100	81.032	Danio_rerio
ENSSFOG00015012445	rbm47	94	75.265	ENSDNOG00000046854	RBM47	100	74.124	Dasypus_novemcinctus
ENSSFOG00015012445	rbm47	100	71.921	ENSDORG00000010144	Rbm47	100	72.459	Dipodomys_ordii
ENSSFOG00015012445	rbm47	95	73.702	ENSETEG00000009194	RBM47	100	72.414	Echinops_telfairi
ENSSFOG00015012445	rbm47	91	62.289	ENSEBUG00000011912	rbm47	87	63.900	Eptatretus_burgeri
ENSSFOG00015012445	rbm47	94	74.606	ENSEASG00005008443	RBM47	100	73.510	Equus_asinus_asinus
ENSSFOG00015012445	rbm47	94	74.606	ENSECAG00000004400	RBM47	100	73.510	Equus_caballus
ENSSFOG00015012445	rbm47	69	87.560	ENSEEUG00000001194	RBM47	75	81.743	Erinaceus_europaeus
ENSSFOG00015012445	rbm47	100	77.504	ENSELUG00000006148	rbm47	100	77.541	Esox_lucius
ENSSFOG00015012445	rbm47	94	75.263	ENSFCAG00000012399	RBM47	100	74.129	Felis_catus
ENSSFOG00015012445	rbm47	100	74.300	ENSFALG00000002861	RBM47	100	74.300	Ficedula_albicollis
ENSSFOG00015012445	rbm47	100	71.476	ENSFDAG00000016326	RBM47	100	71.854	Fukomys_damarensis
ENSSFOG00015012445	rbm47	100	77.612	ENSFHEG00000007938	rbm47	100	78.441	Fundulus_heteroclitus
ENSSFOG00015012445	rbm47	100	75.772	ENSGMOG00000014802	rbm47	100	74.472	Gadus_morhua
ENSSFOG00015012445	rbm47	71	83.204	ENSGALG00000014267	RBM47	100	82.519	Gallus_gallus
ENSSFOG00015012445	rbm47	71	83.161	ENSGAFG00000020571	rbm47	98	83.204	Gambusia_affinis
ENSSFOG00015012445	rbm47	100	76.393	ENSGACG00000016223	rbm47	100	77.138	Gasterosteus_aculeatus
ENSSFOG00015012445	rbm47	100	74.836	ENSGAGG00000020051	RBM47	100	74.877	Gopherus_agassizii
ENSSFOG00015012445	rbm47	94	80.800	ENSGGOG00000001367	RBM47	96	81.026	Gorilla_gorilla
ENSSFOG00015012445	rbm47	100	85.788	ENSHBUG00000003520	rbm47	100	85.530	Haplochromis_burtoni
ENSSFOG00015012445	rbm47	84	62.532	ENSHGLG00000016914	RBM47	100	75.148	Heterocephalus_glaber_female
ENSSFOG00015012445	rbm47	100	80.879	ENSHGLG00100014028	-	100	75.148	Heterocephalus_glaber_male
ENSSFOG00015012445	rbm47	100	69.759	ENSHGLG00100003071	-	100	69.588	Heterocephalus_glaber_male
ENSSFOG00015012445	rbm47	99	77.741	ENSHCOG00000002074	rbm47	99	78.239	Hippocampus_comes
ENSSFOG00015012445	rbm47	100	79.734	ENSIPUG00000004743	rbm47	100	79.734	Ictalurus_punctatus
ENSSFOG00015012445	rbm47	100	76.413	ENSSTOG00000004727	RBM47	100	72.781	Ictidomys_tridecemlineatus
ENSSFOG00015012445	rbm47	94	76.132	ENSJJAG00000013823	Rbm47	100	74.135	Jaculus_jaculus
ENSSFOG00015012445	rbm47	100	83.969	ENSKMAG00000000084	rbm47	100	84.655	Kryptolebias_marmoratus
ENSSFOG00015012445	rbm47	100	83.632	ENSLBEG00000008436	rbm47	100	82.609	Labrus_bergylta
ENSSFOG00015012445	rbm47	100	74.917	ENSLACG00000007196	RBM47	100	74.752	Latimeria_chalumnae
ENSSFOG00015012445	rbm47	100	81.364	ENSLOCG00000012966	rbm47	95	81.032	Lepisosteus_oculatus
ENSSFOG00015012445	rbm47	100	72.408	ENSLAFG00000011998	RBM47	100	72.742	Loxodonta_africana
ENSSFOG00015012445	rbm47	94	80.800	ENSMFAG00000037967	RBM47	96	81.026	Macaca_fascicularis
ENSSFOG00015012445	rbm47	94	74.087	ENSMMUG00000012036	RBM47	100	77.451	Macaca_mulatta
ENSSFOG00015012445	rbm47	94	80.800	ENSMNEG00000040774	RBM47	96	81.026	Macaca_nemestrina
ENSSFOG00015012445	rbm47	94	86.054	ENSMLEG00000041432	RBM47	100	82.515	Mandrillus_leucophaeus
ENSSFOG00015012445	rbm47	100	85.242	ENSMAMG00000019143	rbm47	100	79.339	Mastacembelus_armatus
ENSSFOG00015012445	rbm47	100	85.788	ENSMZEG00005023659	rbm47	100	85.530	Maylandia_zebra
ENSSFOG00015012445	rbm47	100	73.934	ENSMGAG00000012226	RBM47	100	73.770	Meleagris_gallopavo
ENSSFOG00015012445	rbm47	100	76.716	ENSMAUG00000006493	Rbm47	100	74.556	Mesocricetus_auratus
ENSSFOG00015012445	rbm47	94	83.944	ENSMICG00000026417	RBM47	100	73.579	Microcebus_murinus
ENSSFOG00015012445	rbm47	100	76.904	ENSMOCG00000021170	Rbm47	100	74.556	Microtus_ochrogaster
ENSSFOG00015012445	rbm47	100	78.218	ENSMMOG00000007260	rbm47	100	79.043	Mola_mola
ENSSFOG00015012445	rbm47	58	77.259	ENSMODG00000015426	-	100	77.259	Monodelphis_domestica
ENSSFOG00015012445	rbm47	100	75.618	ENSMODG00000007003	RBM47	100	75.288	Monodelphis_domestica
ENSSFOG00015012445	rbm47	100	69.717	ENSMODG00000020561	-	98	70.957	Monodelphis_domestica
ENSSFOG00015012445	rbm47	100	78.017	ENSMALG00000005167	rbm47	100	78.678	Monopterus_albus
ENSSFOG00015012445	rbm47	100	76.658	MGP_CAROLIEiJ_G0027258	Rbm47	100	73.964	Mus_caroli
ENSSFOG00015012445	rbm47	100	76.658	ENSMUSG00000070780	Rbm47	100	73.964	Mus_musculus
ENSSFOG00015012445	rbm47	100	76.904	MGP_PahariEiJ_G0017040	Rbm47	100	74.556	Mus_pahari
ENSSFOG00015012445	rbm47	100	76.658	MGP_SPRETEiJ_G0028253	Rbm47	100	73.964	Mus_spretus
ENSSFOG00015012445	rbm47	94	74.476	ENSMPUG00000006177	RBM47	94	73.388	Mustela_putorius_furo
ENSSFOG00015012445	rbm47	100	73.754	ENSMLUG00000000889	RBM47	100	73.798	Myotis_lucifugus
ENSSFOG00015012445	rbm47	100	72.397	ENSNGAG00000003325	Rbm47	100	72.442	Nannospalax_galili
ENSSFOG00015012445	rbm47	100	77.905	ENSNBRG00000015092	rbm47	94	85.347	Neolamprologus_brichardi
ENSSFOG00015012445	rbm47	94	80.800	ENSNLEG00000017151	RBM47	96	81.026	Nomascus_leucogenys
ENSSFOG00015012445	rbm47	74	80.328	ENSMEUG00000009516	-	99	80.328	Notamacropus_eugenii
ENSSFOG00015012445	rbm47	75	87.190	ENSOPRG00000016507	-	75	87.190	Ochotona_princeps
ENSSFOG00015012445	rbm47	100	71.689	ENSODEG00000004873	RBM47	100	72.893	Octodon_degus
ENSSFOG00015012445	rbm47	100	77.541	ENSONIG00000009061	rbm47	94	84.439	Oreochromis_niloticus
ENSSFOG00015012445	rbm47	100	75.415	ENSOANG00000008978	RBM47	100	76.080	Ornithorhynchus_anatinus
ENSSFOG00015012445	rbm47	100	72.637	ENSOCUG00000012034	RBM47	100	73.675	Oryctolagus_cuniculus
ENSSFOG00015012445	rbm47	100	84.143	ENSORLG00000005847	rbm47	100	79.008	Oryzias_latipes
ENSSFOG00015012445	rbm47	100	84.143	ENSORLG00020005154	rbm47	100	79.008	Oryzias_latipes_hni
ENSSFOG00015012445	rbm47	100	84.399	ENSORLG00015000066	rbm47	100	78.878	Oryzias_latipes_hsok
ENSSFOG00015012445	rbm47	100	78.678	ENSOMEG00000010730	rbm47	100	79.339	Oryzias_melastigma
ENSSFOG00015012445	rbm47	94	75.350	ENSOGAG00000029367	-	100	73.223	Otolemur_garnettii
ENSSFOG00015012445	rbm47	100	68.000	ENSOGAG00000025193	-	100	69.384	Otolemur_garnettii
ENSSFOG00015012445	rbm47	100	66.110	ENSOARG00000012711	RBM47	100	67.500	Ovis_aries
ENSSFOG00015012445	rbm47	94	74.868	ENSPPAG00000029763	RBM47	96	81.026	Pan_paniscus
ENSSFOG00015012445	rbm47	94	84.789	ENSPPRG00000012873	RBM47	99	81.074	Panthera_pardus
ENSSFOG00015012445	rbm47	83	74.089	ENSPTIG00000017046	RBM47	100	74.949	Panthera_tigris_altaica
ENSSFOG00015012445	rbm47	94	80.800	ENSPTRG00000016006	RBM47	96	81.026	Pan_troglodytes
ENSSFOG00015012445	rbm47	94	80.800	ENSPANG00000005980	RBM47	96	81.282	Papio_anubis
ENSSFOG00015012445	rbm47	90	84.137	ENSPKIG00000013431	RBM47	100	75.249	Paramormyrops_kingsleyae
ENSSFOG00015012445	rbm47	87	91.944	ENSPKIG00000005037	rbm47	100	81.864	Paramormyrops_kingsleyae
ENSSFOG00015012445	rbm47	93	79.963	ENSPSIG00000017516	RBM47	97	79.035	Pelodiscus_sinensis
ENSSFOG00015012445	rbm47	94	79.860	ENSPMGG00000018540	rbm47	100	78.275	Periophthalmus_magnuspinnatus
ENSSFOG00015012445	rbm47	100	76.904	ENSPEMG00000011088	Rbm47	100	73.267	Peromyscus_maniculatus_bairdii
ENSSFOG00015012445	rbm47	100	75.935	ENSPFOG00000007997	rbm47	94	82.995	Poecilia_formosa
ENSSFOG00015012445	rbm47	100	83.161	ENSPLAG00000002072	rbm47	94	82.995	Poecilia_latipinna
ENSSFOG00015012445	rbm47	100	83.418	ENSPMEG00000017492	rbm47	100	77.036	Poecilia_mexicana
ENSSFOG00015012445	rbm47	100	83.163	ENSPREG00000008456	rbm47	100	76.998	Poecilia_reticulata
ENSSFOG00015012445	rbm47	95	66.209	ENSPPYG00000014688	RBM47	99	66.895	Pongo_abelii
ENSSFOG00015012445	rbm47	82	80.097	ENSPCAG00000011879	RBM47	81	81.068	Procavia_capensis
ENSSFOG00015012445	rbm47	94	85.393	ENSPCOG00000023451	RBM47	100	74.043	Propithecus_coquereli
ENSSFOG00015012445	rbm47	100	73.267	ENSPVAG00000003812	RBM47	100	73.806	Pteropus_vampyrus
ENSSFOG00015012445	rbm47	100	77.488	ENSPNYG00000022868	rbm47	94	85.090	Pundamilia_nyererei
ENSSFOG00015012445	rbm47	100	80.298	ENSPNAG00000007940	rbm47	94	86.632	Pygocentrus_nattereri
ENSSFOG00015012445	rbm47	100	71.642	ENSRNOG00000002408	Rbm47	100	72.848	Rattus_norvegicus
ENSSFOG00015012445	rbm47	94	84.314	ENSRBIG00000039601	RBM47	96	81.282	Rhinopithecus_bieti
ENSSFOG00015012445	rbm47	94	84.314	ENSRROG00000044696	RBM47	96	81.282	Rhinopithecus_roxellana
ENSSFOG00015012445	rbm47	100	71.189	ENSSBOG00000028475	RBM47	100	79.032	Saimiri_boliviensis_boliviensis
ENSSFOG00015012445	rbm47	100	74.627	ENSSHAG00000017576	RBM47	100	74.338	Sarcophilus_harrisii
ENSSFOG00015012445	rbm47	100	84.833	ENSSMAG00000009744	rbm47	100	79.174	Scophthalmus_maximus
ENSSFOG00015012445	rbm47	100	78.974	ENSSDUG00000022684	rbm47	97	82.199	Seriola_dumerili
ENSSFOG00015012445	rbm47	100	84.557	ENSSLDG00000003109	rbm47	100	79.305	Seriola_lalandi_dorsalis
ENSSFOG00015012445	rbm47	79	79.303	ENSSARG00000001735	RBM47	75	80.610	Sorex_araneus
ENSSFOG00015012445	rbm47	100	81.748	ENSSPUG00000007515	RBM47	89	85.475	Sphenodon_punctatus
ENSSFOG00015012445	rbm47	100	85.678	ENSSPAG00000001257	rbm47	100	80.132	Stegastes_partitus
ENSSFOG00015012445	rbm47	94	75.131	ENSSSCG00000008796	RBM47	100	73.841	Sus_scrofa
ENSSFOG00015012445	rbm47	100	74.257	ENSTGUG00000008705	RBM47	100	74.257	Taeniopygia_guttata
ENSSFOG00015012445	rbm47	100	76.285	ENSTRUG00000014050	rbm47	98	79.094	Takifugu_rubripes
ENSSFOG00015012445	rbm47	100	77.025	ENSTNIG00000006127	rbm47	100	77.686	Tetraodon_nigroviridis
ENSSFOG00015012445	rbm47	72	83.944	ENSTBEG00000001607	RBM47	76	79.328	Tupaia_belangeri
ENSSFOG00015012445	rbm47	94	75.661	ENSTTRG00000002839	RBM47	100	74.500	Tursiops_truncatus
ENSSFOG00015012445	rbm47	94	74.956	ENSUAMG00000021346	RBM47	100	73.841	Ursus_americanus
ENSSFOG00015012445	rbm47	50	82.400	ENSVPAG00000000641	-	56	73.077	Vicugna_pacos
ENSSFOG00015012445	rbm47	94	74.517	ENSVVUG00000014774	RBM47	100	72.968	Vulpes_vulpes
ENSSFOG00015012445	rbm47	100	74.252	ENSXETG00000012802	rbm47	99	76.471	Xenopus_tropicalis
ENSSFOG00015012445	rbm47	100	83.161	ENSXCOG00000000780	rbm47	93	83.161	Xiphophorus_couchianus
ENSSFOG00015012445	rbm47	100	83.418	ENSXMAG00000009874	rbm47	100	77.250	Xiphophorus_maculatus