EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015012835 (Gene tree)
Gene ID: 108919978
Gene Symbol: lig4
Alias: zgc:165595
Full Name: DNA ligase 4
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 2730 bases
Position: chrKV411281.1:4443824-4446553
Accession: 108919978
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015019949	RNA_ligase	PF09414.10	8.4e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015020178	-	2730	XM_018728422	ENSSFOP00015019949	909 (aa)	XP_018583938	A0A1W4XWK6

Gene Model

Click here to download ENSSFOG00015012835's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015012835's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015012835	lig4	100	65.721	ENSG00000174405	LIG4	100	66.706	Homo_sapiens
ENSSFOG00015012835	lig4	100	79.758	ENSAPOG00000000866	lig4	100	79.758	Acanthochromis_polyacanthus
ENSSFOG00015012835	lig4	99	64.673	ENSAMEG00000019685	LIG4	99	64.673	Ailuropoda_melanoleuca
ENSSFOG00015012835	lig4	100	79.451	ENSACIG00000018309	lig4	100	79.451	Amphilophus_citrinellus
ENSSFOG00015012835	lig4	100	79.868	ENSAOCG00000011768	lig4	100	79.868	Amphiprion_ocellaris
ENSSFOG00015012835	lig4	100	80.088	ENSAPEG00000017815	lig4	100	80.088	Amphiprion_percula
ENSSFOG00015012835	lig4	100	79.276	ENSATEG00000005583	lig4	100	79.276	Anabas_testudineus
ENSSFOG00015012835	lig4	96	67.275	ENSAPLG00000001673	LIG4	99	67.275	Anas_platyrhynchos
ENSSFOG00015012835	lig4	99	67.929	ENSACAG00000014566	LIG4	99	67.929	Anolis_carolinensis
ENSSFOG00015012835	lig4	100	65.066	ENSANAG00000012446	LIG4	100	65.066	Aotus_nancymaae
ENSSFOG00015012835	lig4	100	79.011	ENSACLG00000027051	lig4	100	79.011	Astatotilapia_calliptera
ENSSFOG00015012835	lig4	99	79.755	ENSAMXG00000008192	lig4	93	79.755	Astyanax_mexicanus
ENSSFOG00015012835	lig4	100	64.738	ENSBTAG00000015868	LIG4	100	64.738	Bos_taurus
ENSSFOG00015012835	lig4	100	64.738	ENSCJAG00000014689	LIG4	100	64.738	Callithrix_jacchus
ENSSFOG00015012835	lig4	100	64.738	ENSCAFG00000006031	LIG4	100	64.738	Canis_familiaris
ENSSFOG00015012835	lig4	100	64.738	ENSCAFG00020021230	LIG4	100	64.738	Canis_lupus_dingo
ENSSFOG00015012835	lig4	100	64.410	ENSCHIG00000001019	LIG4	100	64.410	Capra_hircus
ENSSFOG00015012835	lig4	99	65.487	ENSCAPG00000006284	LIG4	99	65.487	Cavia_aperea
ENSSFOG00015012835	lig4	100	64.847	ENSCPOG00000014266	LIG4	100	64.847	Cavia_porcellus
ENSSFOG00015012835	lig4	100	64.956	ENSCCAG00000019971	LIG4	100	64.956	Cebus_capucinus
ENSSFOG00015012835	lig4	99	66.336	ENSCATG00000021075	LIG4	99	66.336	Cercocebus_atys
ENSSFOG00015012835	lig4	99	65.967	ENSCLAG00000003376	LIG4	99	65.967	Chinchilla_lanigera
ENSSFOG00015012835	lig4	100	65.830	ENSCSAG00000000211	LIG4	100	65.830	Chlorocebus_sabaeus
ENSSFOG00015012835	lig4	99	69.811	ENSCPBG00000023291	LIG4	100	69.147	Chrysemys_picta_bellii
ENSSFOG00015012835	lig4	70	47.304	ENSCING00000009536	-	99	47.304	Ciona_intestinalis
ENSSFOG00015012835	lig4	83	45.598	ENSCSAVG00000010336	-	98	45.598	Ciona_savignyi
ENSSFOG00015012835	lig4	100	65.502	ENSCANG00000005805	LIG4	100	65.502	Colobus_angolensis_palliatus
ENSSFOG00015012835	lig4	99	65.819	ENSCGRG00001012072	Lig4	99	65.819	Cricetulus_griseus_chok1gshd
ENSSFOG00015012835	lig4	99	65.819	ENSCGRG00000013417	Lig4	99	65.819	Cricetulus_griseus_crigri
ENSSFOG00015012835	lig4	97	77.390	ENSCSEG00000013905	lig4	96	77.390	Cynoglossus_semilaevis
ENSSFOG00015012835	lig4	100	78.791	ENSCVAG00000007896	lig4	100	78.791	Cyprinodon_variegatus
ENSSFOG00015012835	lig4	100	78.438	ENSDARG00000060620	lig4	100	78.438	Danio_rerio
ENSSFOG00015012835	lig4	100	65.322	ENSDNOG00000000513	LIG4	100	65.322	Dasypus_novemcinctus
ENSSFOG00015012835	lig4	99	66.888	ENSDORG00000027303	Lig4	99	66.888	Dipodomys_ordii
ENSSFOG00015012835	lig4	89	30.841	FBgn0030506	Lig4	91	30.841	Drosophila_melanogaster
ENSSFOG00015012835	lig4	98	63.636	ENSETEG00000015563	LIG4	100	64.191	Echinops_telfairi
ENSSFOG00015012835	lig4	99	43.717	ENSEBUG00000014243	lig4	99	43.717	Eptatretus_burgeri
ENSSFOG00015012835	lig4	100	65.284	ENSEASG00005022073	LIG4	100	65.284	Equus_asinus_asinus
ENSSFOG00015012835	lig4	100	64.738	ENSECAG00000003257	LIG4	100	64.738	Equus_caballus
ENSSFOG00015012835	lig4	98	80.423	ENSELUG00000006787	lig4	99	80.423	Esox_lucius
ENSSFOG00015012835	lig4	99	64.796	ENSFCAG00000031985	LIG4	99	64.796	Felis_catus
ENSSFOG00015012835	lig4	88	68.199	ENSFALG00000004214	LIG4	98	68.199	Ficedula_albicollis
ENSSFOG00015012835	lig4	100	64.301	ENSFDAG00000008973	LIG4	100	64.301	Fukomys_damarensis
ENSSFOG00015012835	lig4	100	79.034	ENSFHEG00000007398	lig4	91	79.034	Fundulus_heteroclitus
ENSSFOG00015012835	lig4	85	74.031	ENSGMOG00000012843	lig4	99	74.031	Gadus_morhua
ENSSFOG00015012835	lig4	100	65.717	ENSGALG00000016854	LIG4	100	65.717	Gallus_gallus
ENSSFOG00015012835	lig4	98	78.547	ENSGAFG00000019779	lig4	96	77.998	Gambusia_affinis
ENSSFOG00015012835	lig4	99	76.821	ENSGACG00000014135	lig4	99	76.932	Gasterosteus_aculeatus
ENSSFOG00015012835	lig4	100	65.611	ENSGGOG00000027771	LIG4	100	65.611	Gorilla_gorilla
ENSSFOG00015012835	lig4	100	78.791	ENSHBUG00000006245	lig4	100	78.791	Haplochromis_burtoni
ENSSFOG00015012835	lig4	100	65.066	ENSHGLG00000000718	LIG4	100	65.066	Heterocephalus_glaber_female
ENSSFOG00015012835	lig4	100	65.066	ENSHGLG00100003265	LIG4	100	65.066	Heterocephalus_glaber_male
ENSSFOG00015012835	lig4	100	74.561	ENSHCOG00000012010	lig4	100	74.561	Hippocampus_comes
ENSSFOG00015012835	lig4	100	77.668	ENSIPUG00000013748	lig4	100	77.668	Ictalurus_punctatus
ENSSFOG00015012835	lig4	99	65.532	ENSSTOG00000024303	LIG4	99	65.532	Ictidomys_tridecemlineatus
ENSSFOG00015012835	lig4	100	65.611	ENSJJAG00000006750	Lig4	100	65.611	Jaculus_jaculus
ENSSFOG00015012835	lig4	100	77.338	ENSKMAG00000001149	lig4	100	77.338	Kryptolebias_marmoratus
ENSSFOG00015012835	lig4	91	79.081	ENSLBEG00000014578	lig4	100	79.081	Labrus_bergylta
ENSSFOG00015012835	lig4	100	67.908	ENSLACG00000003282	LIG4	100	67.908	Latimeria_chalumnae
ENSSFOG00015012835	lig4	100	75.465	ENSLOCG00000008901	lig4	99	75.465	Lepisosteus_oculatus
ENSSFOG00015012835	lig4	99	64.199	ENSLAFG00000031152	LIG4	99	64.199	Loxodonta_africana
ENSSFOG00015012835	lig4	100	66.157	ENSMFAG00000037235	LIG4	100	66.157	Macaca_fascicularis
ENSSFOG00015012835	lig4	100	66.048	ENSMMUG00000008874	LIG4	100	66.048	Macaca_mulatta
ENSSFOG00015012835	lig4	100	66.157	ENSMNEG00000023575	LIG4	100	66.157	Macaca_nemestrina
ENSSFOG00015012835	lig4	100	65.830	ENSMLEG00000026720	LIG4	100	65.830	Mandrillus_leucophaeus
ENSSFOG00015012835	lig4	100	79.670	ENSMAMG00000008472	lig4	99	79.670	Mastacembelus_armatus
ENSSFOG00015012835	lig4	100	79.011	ENSMZEG00005001855	lig4	100	79.011	Maylandia_zebra
ENSSFOG00015012835	lig4	100	65.936	ENSMGAG00000015532	LIG4	100	65.936	Meleagris_gallopavo
ENSSFOG00015012835	lig4	100	64.410	ENSMOCG00000019000	Lig4	100	64.410	Microtus_ochrogaster
ENSSFOG00015012835	lig4	100	78.022	ENSMMOG00000004390	lig4	100	78.022	Mola_mola
ENSSFOG00015012835	lig4	99	65.232	ENSMODG00000025064	LIG4	99	65.601	Monodelphis_domestica
ENSSFOG00015012835	lig4	100	79.231	ENSMALG00000008555	lig4	100	79.231	Monopterus_albus
ENSSFOG00015012835	lig4	100	64.410	MGP_CAROLIEiJ_G0030809	Lig4	100	64.410	Mus_caroli
ENSSFOG00015012835	lig4	100	64.520	ENSMUSG00000049717	Lig4	100	64.520	Mus_musculus
ENSSFOG00015012835	lig4	100	64.192	MGP_PahariEiJ_G0021270	Lig4	100	64.192	Mus_pahari
ENSSFOG00015012835	lig4	100	64.738	MGP_SPRETEiJ_G0031917	Lig4	100	64.738	Mus_spretus
ENSSFOG00015012835	lig4	100	64.629	ENSMPUG00000018675	LIG4	100	64.629	Mustela_putorius_furo
ENSSFOG00015012835	lig4	100	66.013	ENSMLUG00000001267	LIG4	100	66.013	Myotis_lucifugus
ENSSFOG00015012835	lig4	99	65.642	ENSNGAG00000013258	Lig4	99	65.642	Nannospalax_galili
ENSSFOG00015012835	lig4	100	78.791	ENSNBRG00000021252	lig4	100	78.791	Neolamprologus_brichardi
ENSSFOG00015012835	lig4	100	65.611	ENSNLEG00000007888	LIG4	100	65.611	Nomascus_leucogenys
ENSSFOG00015012835	lig4	100	64.410	ENSOPRG00000005765	LIG4	100	64.410	Ochotona_princeps
ENSSFOG00015012835	lig4	100	64.629	ENSODEG00000019683	LIG4	100	64.629	Octodon_degus
ENSSFOG00015012835	lig4	100	79.693	ENSONIG00000011969	lig4	99	79.693	Oreochromis_niloticus
ENSSFOG00015012835	lig4	100	64.738	ENSOCUG00000015734	LIG4	100	64.738	Oryctolagus_cuniculus
ENSSFOG00015012835	lig4	99	76.400	ENSORLG00000004041	lig4	99	76.619	Oryzias_latipes
ENSSFOG00015012835	lig4	99	76.400	ENSORLG00020019607	lig4	99	76.619	Oryzias_latipes_hni
ENSSFOG00015012835	lig4	99	76.180	ENSORLG00015017754	lig4	99	76.400	Oryzias_latipes_hsok
ENSSFOG00015012835	lig4	76	81.304	ENSOMEG00000003459	lig4	100	81.304	Oryzias_melastigma
ENSSFOG00015012835	lig4	99	65.317	ENSOGAG00000032120	LIG4	99	65.317	Otolemur_garnettii
ENSSFOG00015012835	lig4	83	67.989	ENSOARG00000005590	LIG4	99	67.989	Ovis_aries
ENSSFOG00015012835	lig4	100	65.611	ENSPPAG00000032998	LIG4	100	65.611	Pan_paniscus
ENSSFOG00015012835	lig4	99	65.127	ENSPPRG00000017804	LIG4	99	65.127	Panthera_pardus
ENSSFOG00015012835	lig4	99	65.017	ENSPTIG00000010051	LIG4	99	65.017	Panthera_tigris_altaica
ENSSFOG00015012835	lig4	100	65.721	ENSPTRG00000006025	LIG4	100	65.721	Pan_troglodytes
ENSSFOG00015012835	lig4	99	66.446	ENSPANG00000007562	LIG4	99	66.446	Papio_anubis
ENSSFOG00015012835	lig4	100	83.938	ENSPKIG00000011645	lig4	99	83.938	Paramormyrops_kingsleyae
ENSSFOG00015012835	lig4	100	69.079	ENSPSIG00000001504	LIG4	100	69.079	Pelodiscus_sinensis
ENSSFOG00015012835	lig4	98	73.684	ENSPMGG00000013486	lig4	99	73.400	Periophthalmus_magnuspinnatus
ENSSFOG00015012835	lig4	99	65.155	ENSPEMG00000000076	Lig4	99	65.155	Peromyscus_maniculatus_bairdii
ENSSFOG00015012835	lig4	99	65.487	ENSPCIG00000021882	LIG4	99	65.487	Phascolarctos_cinereus
ENSSFOG00015012835	lig4	98	79.866	ENSPFOG00000000797	lig4	99	79.185	Poecilia_formosa
ENSSFOG00015012835	lig4	98	79.754	ENSPLAG00000001196	lig4	99	79.075	Poecilia_latipinna
ENSSFOG00015012835	lig4	98	79.978	ENSPMEG00000021353	lig4	99	79.405	Poecilia_mexicana
ENSSFOG00015012835	lig4	98	79.306	ENSPREG00000007323	lig4	99	78.855	Poecilia_reticulata
ENSSFOG00015012835	lig4	100	65.393	ENSPPYG00000005540	LIG4	100	65.393	Pongo_abelii
ENSSFOG00015012835	lig4	100	64.738	ENSPVAG00000016403	LIG4	100	64.738	Pteropus_vampyrus
ENSSFOG00015012835	lig4	100	79.011	ENSPNYG00000009660	lig4	100	79.011	Pundamilia_nyererei
ENSSFOG00015012835	lig4	99	80.713	ENSPNAG00000028069	LIG4	99	80.713	Pygocentrus_nattereri
ENSSFOG00015012835	lig4	99	80.713	ENSPNAG00000028056	lig4	99	80.713	Pygocentrus_nattereri
ENSSFOG00015012835	lig4	99	65.006	ENSRNOG00000014605	Lig4	99	65.006	Rattus_norvegicus
ENSSFOG00015012835	lig4	100	64.738	ENSRBIG00000039962	LIG4	100	64.738	Rhinopithecus_bieti
ENSSFOG00015012835	lig4	100	65.393	ENSRROG00000006040	LIG4	100	65.393	Rhinopithecus_roxellana
ENSSFOG00015012835	lig4	100	64.410	ENSSBOG00000019029	LIG4	100	64.410	Saimiri_boliviensis_boliviensis
ENSSFOG00015012835	lig4	99	62.791	ENSSHAG00000009525	LIG4	99	63.164	Sarcophilus_harrisii
ENSSFOG00015012835	lig4	100	77.118	ENSSMAG00000011267	lig4	100	77.118	Scophthalmus_maximus
ENSSFOG00015012835	lig4	100	79.322	ENSSDUG00000010343	lig4	100	79.212	Seriola_dumerili
ENSSFOG00015012835	lig4	100	77.462	ENSSLDG00000003239	lig4	100	77.462	Seriola_lalandi_dorsalis
ENSSFOG00015012835	lig4	99	64.680	ENSSARG00000006573	LIG4	99	64.680	Sorex_araneus
ENSSFOG00015012835	lig4	92	70.155	ENSSPUG00000002444	LIG4	100	70.155	Sphenodon_punctatus
ENSSFOG00015012835	lig4	100	79.011	ENSSPAG00000001609	lig4	100	79.011	Stegastes_partitus
ENSSFOG00015012835	lig4	100	65.355	ENSSSCG00000009540	LIG4	100	65.355	Sus_scrofa
ENSSFOG00015012835	lig4	99	66.962	ENSTGUG00000010795	LIG4	99	66.962	Taeniopygia_guttata
ENSSFOG00015012835	lig4	100	77.741	ENSTRUG00000009984	lig4	100	77.741	Takifugu_rubripes
ENSSFOG00015012835	lig4	100	77.008	ENSTNIG00000010348	lig4	100	77.228	Tetraodon_nigroviridis
ENSSFOG00015012835	lig4	100	65.175	ENSTBEG00000017741	LIG4	100	65.175	Tupaia_belangeri
ENSSFOG00015012835	lig4	100	64.956	ENSTTRG00000012660	LIG4	100	64.956	Tursiops_truncatus
ENSSFOG00015012835	lig4	99	64.452	ENSUAMG00000003773	LIG4	99	64.452	Ursus_americanus
ENSSFOG00015012835	lig4	100	66.118	ENSXETG00000002654	lig4	100	66.118	Xenopus_tropicalis
ENSSFOG00015012835	lig4	98	79.195	ENSXCOG00000017401	lig4	99	78.524	Xiphophorus_couchianus
ENSSFOG00015012835	lig4	98	79.642	ENSXMAG00000015142	lig4	99	78.965	Xiphophorus_maculatus