EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015012920 (Gene tree)
Gene ID: 108928409
Gene Symbol: chd6
Alias: si:dkey-6e2.3|zmp:0000000556
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 33340 bases
Position: chrKV410887.1:2158895-2192234
Accession: 108928409
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015020203	ResIII	PF04851.15	3.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015020435	-	7911	XM_018742315	ENSSFOP00015020203	2636 (aa)	XP_018597831	-

Gene Model

Click here to download ENSSFOG00015012920's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015012920's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015012920	chd6	65	65.645	ENSSFOG00015015077	chd7	66	66.430
ENSSFOG00015012920	chd6	72	65.305	ENSSFOG00015020209	chd9	77	65.376
ENSSFOG00015012920	chd6	72	64.113	ENSSFOG00015001327	chd9	70	64.184
ENSSFOG00015012920	chd6	51	57.006	ENSSFOG00015011577	chd8	56	57.626

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015012920	chd6	81	73.026	ENSG00000124177	CHD6	97	84.884	Homo_sapiens
ENSSFOG00015012920	chd6	91	87.166	ENSAPOG00000013736	chd6	78	68.056	Acanthochromis_polyacanthus
ENSSFOG00015012920	chd6	81	72.766	ENSAMEG00000009496	CHD6	80	75.977	Ailuropoda_melanoleuca
ENSSFOG00015012920	chd6	88	87.976	ENSATEG00000005608	chd6	77	68.624	Anabas_testudineus
ENSSFOG00015012920	chd6	60	72.689	ENSAPLG00000015592	CHD6	57	76.163	Anas_platyrhynchos
ENSSFOG00015012920	chd6	77	71.476	ENSACAG00000006842	CHD6	79	70.207	Anolis_carolinensis
ENSSFOG00015012920	chd6	81	73.199	ENSANAG00000037548	CHD6	94	86.990	Aotus_nancymaae
ENSSFOG00015012920	chd6	98	72.112	ENSAMXG00000009576	chd6	92	74.538	Astyanax_mexicanus
ENSSFOG00015012920	chd6	81	72.860	ENSBTAG00000005733	CHD6	78	75.992	Bos_taurus
ENSSFOG00015012920	chd6	77	76.505	ENSCJAG00000017920	CHD6	94	86.990	Callithrix_jacchus
ENSSFOG00015012920	chd6	81	72.904	ENSCAFG00000009236	CHD6	80	75.911	Canis_familiaris
ENSSFOG00015012920	chd6	81	73.309	ENSCAFG00020012906	CHD6	94	86.550	Canis_lupus_dingo
ENSSFOG00015012920	chd6	77	76.761	ENSCHIG00000017606	CHD6	78	76.812	Capra_hircus
ENSSFOG00015012920	chd6	65	79.305	ENSTSYG00000014635	CHD6	79	79.305	Carlito_syrichta
ENSSFOG00015012920	chd6	81	73.026	ENSCPOG00000015641	CHD6	78	76.252	Cavia_porcellus
ENSSFOG00015012920	chd6	81	72.843	ENSCCAG00000036828	CHD6	94	86.990	Cebus_capucinus
ENSSFOG00015012920	chd6	81	73.889	ENSCATG00000039248	CHD6	94	86.990	Cercocebus_atys
ENSSFOG00015012920	chd6	80	72.965	ENSCLAG00000013743	CHD6	78	76.252	Chinchilla_lanigera
ENSSFOG00015012920	chd6	81	72.965	ENSCSAG00000013997	CHD6	78	76.187	Chlorocebus_sabaeus
ENSSFOG00015012920	chd6	66	72.130	ENSCHOG00000012647	CHD6	72	71.580	Choloepus_hoffmanni
ENSSFOG00015012920	chd6	76	78.026	ENSCPBG00000019382	CHD6	80	76.574	Chrysemys_picta_bellii
ENSSFOG00015012920	chd6	81	73.456	ENSCANG00000043435	CHD6	94	86.990	Colobus_angolensis_palliatus
ENSSFOG00015012920	chd6	81	72.502	ENSCGRG00001002694	Chd6	78	75.439	Cricetulus_griseus_chok1gshd
ENSSFOG00015012920	chd6	97	76.935	ENSDARG00000017244	chd6	94	76.581	Danio_rerio
ENSSFOG00015012920	chd6	81	72.589	ENSDNOG00000004176	CHD6	80	75.795	Dasypus_novemcinctus
ENSSFOG00015012920	chd6	81	73.937	ENSEASG00005023433	CHD6	94	88.109	Equus_asinus_asinus
ENSSFOG00015012920	chd6	81	72.893	ENSECAG00000011761	CHD6	78	76.187	Equus_caballus
ENSSFOG00015012920	chd6	74	84.516	ENSELUG00000012309	chd6	94	84.516	Esox_lucius
ENSSFOG00015012920	chd6	81	72.678	ENSFCAG00000003572	CHD6	78	75.992	Felis_catus
ENSSFOG00015012920	chd6	74	79.129	ENSFALG00000012563	CHD6	78	75.922	Ficedula_albicollis
ENSSFOG00015012920	chd6	80	71.867	ENSFDAG00000013791	CHD6	78	76.057	Fukomys_damarensis
ENSSFOG00015012920	chd6	74	75.815	ENSGMOG00000011715	chd6	87	75.815	Gadus_morhua
ENSSFOG00015012920	chd6	84	72.239	ENSGACG00000000037	chd6	92	72.104	Gasterosteus_aculeatus
ENSSFOG00015012920	chd6	81	73.488	ENSGGOG00000013123	CHD6	94	86.990	Gorilla_gorilla
ENSSFOG00015012920	chd6	88	87.339	ENSHBUG00000014701	chd6	76	70.122	Haplochromis_burtoni
ENSSFOG00015012920	chd6	81	72.589	ENSHGLG00000004548	CHD6	78	75.797	Heterocephalus_glaber_female
ENSSFOG00015012920	chd6	81	72.589	ENSHGLG00100006401	CHD6	78	75.797	Heterocephalus_glaber_male
ENSSFOG00015012920	chd6	99	65.149	ENSIPUG00000003692	chd6	97	69.718	Ictalurus_punctatus
ENSSFOG00015012920	chd6	77	75.032	ENSSTOG00000013382	CHD6	78	76.203	Ictidomys_tridecemlineatus
ENSSFOG00015012920	chd6	78	75.825	ENSLACG00000010881	CHD6	78	76.600	Latimeria_chalumnae
ENSSFOG00015012920	chd6	79	81.047	ENSLOCG00000007386	chd6	85	81.709	Lepisosteus_oculatus
ENSSFOG00015012920	chd6	79	75.371	ENSLAFG00000012144	CHD6	79	76.543	Loxodonta_africana
ENSSFOG00015012920	chd6	81	73.562	ENSMFAG00000032830	CHD6	94	86.990	Macaca_fascicularis
ENSSFOG00015012920	chd6	81	72.965	ENSMMUG00000020458	CHD6	94	86.990	Macaca_mulatta
ENSSFOG00015012920	chd6	81	73.562	ENSMNEG00000040847	CHD6	94	86.990	Macaca_nemestrina
ENSSFOG00015012920	chd6	81	73.562	ENSMLEG00000031965	CHD6	94	86.990	Mandrillus_leucophaeus
ENSSFOG00015012920	chd6	88	87.672	ENSMAMG00000013111	chd6	75	87.672	Mastacembelus_armatus
ENSSFOG00015012920	chd6	77	74.689	ENSMGAG00000001121	CHD6	80	74.260	Meleagris_gallopavo
ENSSFOG00015012920	chd6	81	72.893	ENSMICG00000016641	CHD6	94	87.184	Microcebus_murinus
ENSSFOG00015012920	chd6	70	80.223	ENSMODG00000000720	-	82	80.223	Monodelphis_domestica
ENSSFOG00015012920	chd6	81	72.182	MGP_CAROLIEiJ_G0024604	Chd6	91	81.860	Mus_caroli
ENSSFOG00015012920	chd6	81	72.242	ENSMUSG00000057133	Chd6	91	81.953	Mus_musculus
ENSSFOG00015012920	chd6	81	71.973	MGP_PahariEiJ_G0026048	Chd6	91	81.767	Mus_pahari
ENSSFOG00015012920	chd6	81	72.242	MGP_SPRETEiJ_G0025526	Chd6	91	81.953	Mus_spretus
ENSSFOG00015012920	chd6	77	75.927	ENSMPUG00000017695	CHD6	79	75.977	Mustela_putorius_furo
ENSSFOG00015012920	chd6	80	73.317	ENSMLUG00000016247	CHD6	77	76.735	Myotis_lucifugus
ENSSFOG00015012920	chd6	99	61.844	ENSNBRG00000013839	chd6	99	62.479	Neolamprologus_brichardi
ENSSFOG00015012920	chd6	81	73.025	ENSNLEG00000006496	CHD6	78	76.172	Nomascus_leucogenys
ENSSFOG00015012920	chd6	76	73.992	ENSOPRG00000013376	-	78	73.992	Ochotona_princeps
ENSSFOG00015012920	chd6	80	80.065	ENSONIG00000000393	chd6	84	79.779	Oreochromis_niloticus
ENSSFOG00015012920	chd6	67	75.343	ENSOANG00000014347	CHD6	68	75.326	Ornithorhynchus_anatinus
ENSSFOG00015012920	chd6	81	72.755	ENSOCUG00000012394	CHD6	78	75.943	Oryctolagus_cuniculus
ENSSFOG00015012920	chd6	92	83.033	ENSORLG00020021891	chd6	95	89.000	Oryzias_latipes_hni
ENSSFOG00015012920	chd6	77	75.992	ENSOGAG00000002427	CHD6	78	75.992	Otolemur_garnettii
ENSSFOG00015012920	chd6	81	72.120	ENSOARG00000002597	CHD6	78	75.230	Ovis_aries
ENSSFOG00015012920	chd6	81	72.755	ENSPPRG00000014756	CHD6	78	75.992	Panthera_pardus
ENSSFOG00015012920	chd6	81	72.556	ENSPTIG00000011094	CHD6	78	75.862	Panthera_tigris_altaica
ENSSFOG00015012920	chd6	81	73.546	ENSPTRG00000013504	CHD6	94	86.990	Pan_troglodytes
ENSSFOG00015012920	chd6	81	73.953	ENSPANG00000025554	CHD6	94	86.990	Papio_anubis
ENSSFOG00015012920	chd6	99	75.862	ENSPKIG00000005578	chd6	96	75.619	Paramormyrops_kingsleyae
ENSSFOG00015012920	chd6	77	77.985	ENSPMGG00000014877	chd6	90	76.893	Periophthalmus_magnuspinnatus
ENSSFOG00015012920	chd6	76	77.092	ENSPCIG00000028037	CHD6	79	76.743	Phascolarctos_cinereus
ENSSFOG00015012920	chd6	88	86.207	ENSPLAG00000003128	chd6	78	86.207	Poecilia_latipinna
ENSSFOG00015012920	chd6	89	86.293	ENSPREG00000022653	chd6	99	88.828	Poecilia_reticulata
ENSSFOG00015012920	chd6	81	72.904	ENSPPYG00000011016	CHD6	78	76.187	Pongo_abelii
ENSSFOG00015012920	chd6	81	72.904	ENSPCOG00000001089	CHD6	94	86.990	Propithecus_coquereli
ENSSFOG00015012920	chd6	99	62.065	ENSPNYG00000022516	chd6	99	62.856	Pundamilia_nyererei
ENSSFOG00015012920	chd6	98	65.079	ENSPNAG00000012825	chd6	97	65.663	Pygocentrus_nattereri
ENSSFOG00015012920	chd6	81	72.243	ENSRNOG00000016744	Chd6	80	75.459	Rattus_norvegicus
ENSSFOG00015012920	chd6	81	73.439	ENSSBOG00000022089	CHD6	94	86.990	Saimiri_boliviensis_boliviensis
ENSSFOG00015012920	chd6	76	77.255	ENSSHAG00000017072	CHD6	78	76.654	Sarcophilus_harrisii
ENSSFOG00015012920	chd6	52	92.763	ENSSARG00000002615	-	52	92.763	Sorex_araneus
ENSSFOG00015012920	chd6	77	76.252	ENSSSCG00000007360	CHD6	78	76.302	Sus_scrofa
ENSSFOG00015012920	chd6	78	75.326	ENSTGUG00000003179	CHD6	89	75.369	Taeniopygia_guttata
ENSSFOG00015012920	chd6	80	75.047	ENSTNIG00000017487	chd6	92	75.171	Tetraodon_nigroviridis
ENSSFOG00015012920	chd6	74	81.414	ENSTTRG00000013438	CHD6	74	81.414	Tursiops_truncatus
ENSSFOG00015012920	chd6	81	72.554	ENSUAMG00000024036	CHD6	94	86.550	Ursus_americanus
ENSSFOG00015012920	chd6	81	73.567	ENSUMAG00000002017	CHD6	94	86.550	Ursus_maritimus
ENSSFOG00015012920	chd6	71	71.681	ENSVPAG00000007941	CHD6	72	71.681	Vicugna_pacos
ENSSFOG00015012920	chd6	81	72.860	ENSVVUG00000029164	CHD6	80	75.911	Vulpes_vulpes
ENSSFOG00015012920	chd6	74	70.355	ENSXETG00000021445	chd6	77	68.920	Xenopus_tropicalis