EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015012924 (Gene tree)
Gene ID: 108941249
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 8538 bases
Position: chrKV411217.1:15559342-15567879
Accession: 108941249
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015020107	RRM_1	PF00076.22	2.8e-14	1	1
ENSSFOP00015020096	RRM_1	PF00076.22	2.2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015020337	-	474	-	ENSSFOP00015020107	99 (aa)	-	-
ENSSFOT00015020326	-	4373	XM_018763945	ENSSFOP00015020096	291 (aa)	XP_018619461	A0A1W5B2N4

Gene Model

Click here to download ENSSFOG00015012924's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015012924's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015012924	-	81	95.000	ENSSFOG00015012015	-	82	84.475
ENSSFOG00015012924	-	97	66.667	ENSSFOG00015004575	-	74	52.000
ENSSFOG00015012924	-	79	73.077	ENSSFOG00015012304	raly	84	51.515
ENSSFOG00015012924	-	81	77.500	ENSSFOG00015009401	-	76	56.332
ENSSFOG00015012924	-	72	35.211	ENSSFOG00015020292	srsf4	64	36.232

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015012924	-	96	67.368	ENSG00000184672	RALYL	92	79.487	Homo_sapiens
ENSSFOG00015012924	-	80	96.203	ENSAPOG00000006963	hnrnpc	82	80.077	Acanthochromis_polyacanthus
ENSSFOG00015012924	-	79	83.333	ENSAPOG00000005050	RALYL	76	83.333	Acanthochromis_polyacanthus
ENSSFOG00015012924	-	74	97.260	ENSAPOG00000020641	-	86	97.260	Acanthochromis_polyacanthus
ENSSFOG00015012924	-	82	81.481	ENSACIG00000001335	-	68	81.481	Amphilophus_citrinellus
ENSSFOG00015012924	-	80	96.203	ENSACIG00000000270	-	83	84.685	Amphilophus_citrinellus
ENSSFOG00015012924	-	80	97.468	ENSACIG00000016568	-	90	77.273	Amphilophus_citrinellus
ENSSFOG00015012924	-	80	96.203	ENSAOCG00000003896	-	82	79.693	Amphiprion_ocellaris
ENSSFOG00015012924	-	80	96.203	ENSAOCG00000021616	-	87	76.552	Amphiprion_ocellaris
ENSSFOG00015012924	-	80	83.544	ENSAPEG00000010582	-	77	83.544	Amphiprion_percula
ENSSFOG00015012924	-	80	96.203	ENSAPEG00000019962	-	81	79.008	Amphiprion_percula
ENSSFOG00015012924	-	80	96.203	ENSAPEG00000001489	-	82	79.693	Amphiprion_percula
ENSSFOG00015012924	-	79	85.897	ENSAPEG00000021452	-	75	85.897	Amphiprion_percula
ENSSFOG00015012924	-	80	97.468	ENSATEG00000011734	-	85	79.771	Anabas_testudineus
ENSSFOG00015012924	-	80	96.203	ENSATEG00000018006	-	79	85.780	Anabas_testudineus
ENSSFOG00015012924	-	96	66.316	ENSAPLG00000015574	RALYL	80	54.430	Anas_platyrhynchos
ENSSFOG00015012924	-	96	66.316	ENSACAG00000028464	RALYL	77	54.077	Anolis_carolinensis
ENSSFOG00015012924	-	96	67.368	ENSANAG00000023383	RALYL	76	57.014	Aotus_nancymaae
ENSSFOG00015012924	-	80	98.734	ENSACLG00000005707	-	87	78.707	Astatotilapia_calliptera
ENSSFOG00015012924	-	78	96.104	ENSACLG00000013636	-	84	78.927	Astatotilapia_calliptera
ENSSFOG00015012924	-	80	94.937	ENSACLG00000000995	-	81	86.364	Astatotilapia_calliptera
ENSSFOG00015012924	-	81	97.500	ENSAMXG00000034915	zgc:55733	87	76.628	Astyanax_mexicanus
ENSSFOG00015012924	-	73	78.972	ENSAMXG00000042946	hnrnpc	97	77.720	Astyanax_mexicanus
ENSSFOG00015012924	-	96	67.368	ENSCJAG00000000402	RALYL	76	56.561	Callithrix_jacchus
ENSSFOG00015012924	-	96	67.368	ENSCPOG00000012314	RALYL	77	55.794	Cavia_porcellus
ENSSFOG00015012924	-	96	67.368	ENSCCAG00000025003	RALYL	77	79.747	Cebus_capucinus
ENSSFOG00015012924	-	96	67.368	ENSCATG00000042145	RALYL	76	57.014	Cercocebus_atys
ENSSFOG00015012924	-	96	67.368	ENSCLAG00000005228	RALYL	77	55.794	Chinchilla_lanigera
ENSSFOG00015012924	-	94	68.817	ENSCHOG00000013228	RALYL	75	53.017	Choloepus_hoffmanni
ENSSFOG00015012924	-	96	67.368	ENSCANG00000039144	RALYL	76	57.014	Colobus_angolensis_palliatus
ENSSFOG00015012924	-	96	67.368	ENSCGRG00001009241	Ralyl	77	55.365	Cricetulus_griseus_chok1gshd
ENSSFOG00015012924	-	96	68.421	ENSCSEG00000019406	-	91	68.421	Cynoglossus_semilaevis
ENSSFOG00015012924	-	79	89.744	ENSCSEG00000019769	-	73	75.113	Cynoglossus_semilaevis
ENSSFOG00015012924	-	80	94.937	ENSCSEG00000021349	-	79	74.809	Cynoglossus_semilaevis
ENSSFOG00015012924	-	80	88.608	ENSCVAG00000002797	-	85	62.214	Cyprinodon_variegatus
ENSSFOG00015012924	-	80	96.203	ENSCVAG00000016981	-	78	76.806	Cyprinodon_variegatus
ENSSFOG00015012924	-	81	91.250	ENSDARG00000053810	hnrnpc	79	78.030	Danio_rerio
ENSSFOG00015012924	-	81	96.250	ENSDARG00000103845	zgc:55733	91	77.011	Danio_rerio
ENSSFOG00015012924	-	96	67.368	ENSDORG00000003721	Ralyl	77	56.466	Dipodomys_ordii
ENSSFOG00015012924	-	79	79.487	ENSETEG00000014028	RALYL	82	61.491	Echinops_telfairi
ENSSFOG00015012924	-	79	74.359	ENSEBUG00000012363	hnrnpc	69	45.570	Eptatretus_burgeri
ENSSFOG00015012924	-	81	72.500	ENSEBUG00000006049	RALYL	78	50.222	Eptatretus_burgeri
ENSSFOG00015012924	-	81	77.500	ENSEEUG00000007202	RALYL	80	55.696	Erinaceus_europaeus
ENSSFOG00015012924	-	81	97.500	ENSELUG00000007714	-	90	79.104	Esox_lucius
ENSSFOG00015012924	-	81	95.000	ENSELUG00000004132	-	88	79.851	Esox_lucius
ENSSFOG00015012924	-	96	66.316	ENSFALG00000008647	RALYL	97	58.140	Ficedula_albicollis
ENSSFOG00015012924	-	97	80.769	ENSFHEG00000007278	-	82	73.646	Fundulus_heteroclitus
ENSSFOG00015012924	-	78	96.104	ENSFHEG00000003605	-	83	75.954	Fundulus_heteroclitus
ENSSFOG00015012924	-	80	82.278	ENSFHEG00000017466	-	66	72.632	Fundulus_heteroclitus
ENSSFOG00015012924	-	79	85.897	ENSFHEG00000000223	-	80	85.897	Fundulus_heteroclitus
ENSSFOG00015012924	-	81	91.250	ENSGMOG00000010344	-	56	91.250	Gadus_morhua
ENSSFOG00015012924	-	81	92.500	ENSGMOG00000013154	-	56	92.500	Gadus_morhua
ENSSFOG00015012924	-	97	65.625	ENSGALG00000036938	RALYL	79	54.622	Gallus_gallus
ENSSFOG00015012924	-	81	91.358	ENSGAFG00000020486	-	81	80.995	Gambusia_affinis
ENSSFOG00015012924	-	86	75.556	ENSGAFG00000020052	-	80	82.927	Gambusia_affinis
ENSSFOG00015012924	-	83	96.341	ENSGAFG00000020992	-	90	75.517	Gambusia_affinis
ENSSFOG00015012924	-	79	82.051	ENSGAFG00000018541	RALYL	76	82.051	Gambusia_affinis
ENSSFOG00015012924	-	81	92.500	ENSGACG00000017772	-	97	75.573	Gasterosteus_aculeatus
ENSSFOG00015012924	-	80	92.405	ENSGACG00000018932	-	88	74.775	Gasterosteus_aculeatus
ENSSFOG00015012924	-	96	67.368	ENSGGOG00000000841	RALYL	76	57.014	Gorilla_gorilla
ENSSFOG00015012924	-	80	100.000	ENSHBUG00000010527	-	87	77.778	Haplochromis_burtoni
ENSSFOG00015012924	-	80	96.203	ENSHBUG00000018342	-	82	79.693	Haplochromis_burtoni
ENSSFOG00015012924	-	96	67.368	ENSHGLG00000004866	RALYL	77	55.365	Heterocephalus_glaber_female
ENSSFOG00015012924	-	96	67.368	ENSHGLG00100017480	RALYL	77	55.365	Heterocephalus_glaber_male
ENSSFOG00015012924	-	86	78.161	ENSHCOG00000002851	-	79	78.161	Hippocampus_comes
ENSSFOG00015012924	-	80	97.468	ENSHCOG00000012333	hnrnpc	89	75.000	Hippocampus_comes
ENSSFOG00015012924	-	80	81.013	ENSHCOG00000012719	-	77	81.013	Hippocampus_comes
ENSSFOG00015012924	-	81	95.000	ENSIPUG00000008666	zgc:55733	100	78.879	Ictalurus_punctatus
ENSSFOG00015012924	-	81	96.250	ENSIPUG00000011271	hnrnpc	98	82.174	Ictalurus_punctatus
ENSSFOG00015012924	-	96	67.368	ENSSTOG00000012583	RALYL	78	56.034	Ictidomys_tridecemlineatus
ENSSFOG00015012924	-	80	96.203	ENSKMAG00000018265	-	87	76.736	Kryptolebias_marmoratus
ENSSFOG00015012924	-	80	94.937	ENSKMAG00000011170	-	82	78.544	Kryptolebias_marmoratus
ENSSFOG00015012924	-	91	85.556	ENSLBEG00000006979	-	85	77.344	Labrus_bergylta
ENSSFOG00015012924	-	80	96.203	ENSLBEG00000006193	-	80	78.244	Labrus_bergylta
ENSSFOG00015012924	-	80	94.937	ENSLBEG00000024418	-	85	72.761	Labrus_bergylta
ENSSFOG00015012924	-	79	82.051	ENSLACG00000000135	-	92	80.488	Latimeria_chalumnae
ENSSFOG00015012924	-	82	95.062	ENSLOCG00000002560	hnrnpc	89	72.491	Lepisosteus_oculatus
ENSSFOG00015012924	-	81	91.250	ENSMMUG00000003920	-	98	86.316	Macaca_mulatta
ENSSFOG00015012924	-	96	67.368	ENSMNEG00000033288	RALYL	76	57.014	Macaca_nemestrina
ENSSFOG00015012924	-	96	67.368	ENSMLEG00000038284	RALYL	76	57.014	Mandrillus_leucophaeus
ENSSFOG00015012924	-	80	94.937	ENSMAMG00000008033	-	89	80.916	Mastacembelus_armatus
ENSSFOG00015012924	-	80	97.468	ENSMAMG00000012236	-	84	78.927	Mastacembelus_armatus
ENSSFOG00015012924	-	80	82.278	ENSMAMG00000011137	RALYL	91	75.000	Mastacembelus_armatus
ENSSFOG00015012924	-	96	79.211	ENSMZEG00005020460	-	87	77.011	Maylandia_zebra
ENSSFOG00015012924	-	80	98.734	ENSMZEG00005024249	-	87	77.431	Maylandia_zebra
ENSSFOG00015012924	-	96	67.368	ENSMAUG00000015149	Ralyl	77	55.365	Mesocricetus_auratus
ENSSFOG00015012924	-	96	67.368	ENSMICG00000005558	RALYL	84	77.108	Microcebus_murinus
ENSSFOG00015012924	-	96	67.368	ENSMOCG00000017371	Ralyl	77	55.365	Microtus_ochrogaster
ENSSFOG00015012924	-	82	81.481	ENSMMOG00000004599	-	75	81.481	Mola_mola
ENSSFOG00015012924	-	80	97.468	ENSMMOG00000021465	-	88	81.226	Mola_mola
ENSSFOG00015012924	-	81	97.500	ENSMMOG00000019520	-	84	85.135	Mola_mola
ENSSFOG00015012924	-	86	74.118	ENSMODG00000029239	-	83	74.118	Monodelphis_domestica
ENSSFOG00015012924	-	80	97.468	ENSMALG00000014623	-	80	77.481	Monopterus_albus
ENSSFOG00015012924	-	80	94.937	ENSMALG00000007520	-	84	70.881	Monopterus_albus
ENSSFOG00015012924	-	96	66.316	ENSMUSG00000039717	Ralyl	92	78.205	Mus_musculus
ENSSFOG00015012924	-	96	67.368	ENSMPUG00000010724	RALYL	77	54.936	Mustela_putorius_furo
ENSSFOG00015012924	-	96	67.368	ENSNGAG00000013375	Ralyl	77	55.603	Nannospalax_galili
ENSSFOG00015012924	-	80	96.203	ENSNBRG00000004912	-	93	81.385	Neolamprologus_brichardi
ENSSFOG00015012924	-	80	100.000	ENSNBRG00000015676	-	90	75.676	Neolamprologus_brichardi
ENSSFOG00015012924	-	96	67.368	ENSNLEG00000002702	RALYL	73	56.757	Nomascus_leucogenys
ENSSFOG00015012924	-	63	64.516	ENSOPRG00000013650	-	98	50.515	Ochotona_princeps
ENSSFOG00015012924	-	96	67.368	ENSODEG00000001012	RALYL	79	54.852	Octodon_degus
ENSSFOG00015012924	-	82	95.062	ENSONIG00000007859	-	90	78.810	Oreochromis_niloticus
ENSSFOG00015012924	-	80	100.000	ENSONIG00000018350	-	87	77.431	Oreochromis_niloticus
ENSSFOG00015012924	-	80	78.481	ENSOANG00000030197	-	53	78.481	Ornithorhynchus_anatinus
ENSSFOG00015012924	-	80	97.468	ENSORLG00000003144	-	79	78.519	Oryzias_latipes
ENSSFOG00015012924	-	78	88.312	ENSORLG00000009999	-	83	69.318	Oryzias_latipes
ENSSFOG00015012924	-	78	88.312	ENSORLG00020018228	hnrnpc	83	68.939	Oryzias_latipes_hni
ENSSFOG00015012924	-	78	88.312	ENSORLG00015019755	-	83	69.318	Oryzias_latipes_hsok
ENSSFOG00015012924	-	80	97.468	ENSORLG00015009460	-	78	78.519	Oryzias_latipes_hsok
ENSSFOG00015012924	-	80	97.468	ENSOMEG00000022665	-	79	80.228	Oryzias_melastigma
ENSSFOG00015012924	-	78	89.610	ENSOMEG00000020488	-	82	70.455	Oryzias_melastigma
ENSSFOG00015012924	-	96	67.368	ENSPPAG00000038705	RALYL	76	57.014	Pan_paniscus
ENSSFOG00015012924	-	96	67.368	ENSPPRG00000018612	RALYL	76	57.919	Panthera_pardus
ENSSFOG00015012924	-	96	67.368	ENSPTIG00000020331	RALYL	76	57.919	Panthera_tigris_altaica
ENSSFOG00015012924	-	96	67.368	ENSPTRG00000020381	RALYL	76	57.014	Pan_troglodytes
ENSSFOG00015012924	-	96	67.368	ENSPANG00000029305	RALYL	76	57.014	Papio_anubis
ENSSFOG00015012924	-	79	80.769	ENSPKIG00000023807	RALYL	92	73.333	Paramormyrops_kingsleyae
ENSSFOG00015012924	-	90	90.458	ENSPKIG00000022837	-	82	90.076	Paramormyrops_kingsleyae
ENSSFOG00015012924	-	81	98.750	ENSPKIG00000008592	-	82	84.791	Paramormyrops_kingsleyae
ENSSFOG00015012924	-	96	66.316	ENSPSIG00000011135	RALYL	78	54.430	Pelodiscus_sinensis
ENSSFOG00015012924	-	80	97.468	ENSPMGG00000013144	-	81	84.475	Periophthalmus_magnuspinnatus
ENSSFOG00015012924	-	83	87.805	ENSPMGG00000017774	-	87	68.075	Periophthalmus_magnuspinnatus
ENSSFOG00015012924	-	96	67.368	ENSPEMG00000016447	Ralyl	77	55.603	Peromyscus_maniculatus_bairdii
ENSSFOG00015012924	-	81	75.000	ENSPMAG00000002407	RALYL	97	54.077	Petromyzon_marinus
ENSSFOG00015012924	-	80	78.481	ENSPCIG00000023938	-	69	78.481	Phascolarctos_cinereus
ENSSFOG00015012924	-	78	94.805	ENSPFOG00000001583	-	83	74.905	Poecilia_formosa
ENSSFOG00015012924	-	82	96.296	ENSPFOG00000002643	-	87	75.862	Poecilia_formosa
ENSSFOG00015012924	-	82	96.296	ENSPLAG00000000061	-	87	75.862	Poecilia_latipinna
ENSSFOG00015012924	-	78	92.208	ENSPLAG00000015305	-	83	74.427	Poecilia_latipinna
ENSSFOG00015012924	-	82	96.296	ENSPMEG00000016524	-	87	75.517	Poecilia_mexicana
ENSSFOG00015012924	-	78	94.805	ENSPMEG00000004802	-	83	75.191	Poecilia_mexicana
ENSSFOG00015012924	-	82	96.296	ENSPREG00000001852	-	85	78.626	Poecilia_reticulata
ENSSFOG00015012924	-	78	92.208	ENSPREG00000007928	-	83	74.427	Poecilia_reticulata
ENSSFOG00015012924	-	96	67.368	ENSPVAG00000010821	RALYL	80	54.098	Pteropus_vampyrus
ENSSFOG00015012924	-	80	96.203	ENSPNYG00000020293	-	91	77.178	Pundamilia_nyererei
ENSSFOG00015012924	-	80	100.000	ENSPNYG00000003747	-	86	78.788	Pundamilia_nyererei
ENSSFOG00015012924	-	80	96.203	ENSPNAG00000015686	hnrnpc	85	79.771	Pygocentrus_nattereri
ENSSFOG00015012924	-	81	93.750	ENSPNAG00000019200	zgc:55733	82	76.046	Pygocentrus_nattereri
ENSSFOG00015012924	-	96	67.368	ENSRROG00000023925	RALYL	88	73.563	Rhinopithecus_roxellana
ENSSFOG00015012924	-	81	97.500	ENSSMAG00000011147	-	79	85.909	Scophthalmus_maximus
ENSSFOG00015012924	-	78	93.506	ENSSMAG00000013592	-	74	82.479	Scophthalmus_maximus
ENSSFOG00015012924	-	80	96.203	ENSSDUG00000001723	-	90	75.261	Seriola_dumerili
ENSSFOG00015012924	-	80	96.203	ENSSDUG00000006730	-	87	75.439	Seriola_dumerili
ENSSFOG00015012924	-	80	97.468	ENSSLDG00000007454	-	83	80.460	Seriola_lalandi_dorsalis
ENSSFOG00015012924	-	81	96.250	ENSSLDG00000008069	-	76	96.250	Seriola_lalandi_dorsalis
ENSSFOG00015012924	-	80	96.203	ENSSLDG00000007474	-	87	77.567	Seriola_lalandi_dorsalis
ENSSFOG00015012924	-	80	96.203	ENSSPAG00000013996	-	88	77.700	Stegastes_partitus
ENSSFOG00015012924	-	80	82.278	ENSSPAG00000014679	-	83	82.278	Stegastes_partitus
ENSSFOG00015012924	-	80	97.468	ENSSPAG00000023204	-	82	81.226	Stegastes_partitus
ENSSFOG00015012924	-	96	66.316	ENSTGUG00000011689	RALYL	78	55.603	Taeniopygia_guttata
ENSSFOG00015012924	-	80	82.278	ENSTRUG00000021320	RALYL	86	82.278	Takifugu_rubripes
ENSSFOG00015012924	-	80	92.405	ENSTRUG00000020158	-	83	75.862	Takifugu_rubripes
ENSSFOG00015012924	-	80	94.937	ENSTRUG00000002153	-	79	93.333	Takifugu_rubripes
ENSSFOG00015012924	-	93	82.609	ENSTNIG00000007427	-	83	77.778	Tetraodon_nigroviridis
ENSSFOG00015012924	-	80	97.468	ENSTNIG00000000334	-	93	71.863	Tetraodon_nigroviridis
ENSSFOG00015012924	-	79	79.487	ENSTBEG00000005551	RALYL	92	46.484	Tupaia_belangeri
ENSSFOG00015012924	-	81	77.500	ENSTTRG00000015762	RALYL	78	53.879	Tursiops_truncatus
ENSSFOG00015012924	-	87	86.047	ENSUAMG00000006020	-	90	86.047	Ursus_americanus
ENSSFOG00015012924	-	81	77.500	ENSVPAG00000008501	RALYL	77	54.751	Vicugna_pacos
ENSSFOG00015012924	-	79	92.308	ENSXCOG00000006552	-	82	69.732	Xiphophorus_couchianus
ENSSFOG00015012924	-	82	83.951	ENSXCOG00000016096	-	70	83.951	Xiphophorus_couchianus
ENSSFOG00015012924	-	82	95.062	ENSXCOG00000019434	-	71	88.024	Xiphophorus_couchianus
ENSSFOG00015012924	-	80	96.203	ENSXMAG00000022849	-	92	75.258	Xiphophorus_maculatus
ENSSFOG00015012924	-	94	78.545	ENSXMAG00000009333	-	83	74.809	Xiphophorus_maculatus