EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015013055 (Gene tree)
Gene ID: 108927655
Gene Symbol: rnpc3
Alias: caliban|clbn|zgc:136847
Full Name: RNA binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 11146 bases
Position: chrKV410874.1:5789031-5800176
Accession: 108927655
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015020335	RRM_1	PF00076.22	3.4e-17	1	2
ENSSFOP00015020335	RRM_1	PF00076.22	3.4e-17	2	2
ENSSFOP00015020361	RRM_1	PF00076.22	3.9e-17	1	2
ENSSFOP00015020361	RRM_1	PF00076.22	3.9e-17	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015020593	-	2266	XM_018741064	ENSSFOP00015020361	512 (aa)	XP_018596580	A0A1W4Z787
ENSSFOT00015020568	-	1476	-	ENSSFOP00015020335	491 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015013055's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015013055's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015013055	rnpc3	99	57.558	ENSG00000185946	RNPC3	96	59.562	Homo_sapiens
ENSSFOG00015013055	rnpc3	99	71.633	ENSAPOG00000017371	rnpc3	99	70.356	Acanthochromis_polyacanthus
ENSSFOG00015013055	rnpc3	99	57.059	ENSAMEG00000001694	RNPC3	95	59.073	Ailuropoda_melanoleuca
ENSSFOG00015013055	rnpc3	99	65.600	ENSACIG00000021043	rnpc3	99	65.422	Amphilophus_citrinellus
ENSSFOG00015013055	rnpc3	99	71.227	ENSAOCG00000014052	rnpc3	96	71.142	Amphiprion_ocellaris
ENSSFOG00015013055	rnpc3	99	71.026	ENSAPEG00000008739	rnpc3	97	70.138	Amphiprion_percula
ENSSFOG00015013055	rnpc3	99	67.118	ENSATEG00000021263	rnpc3	99	67.118	Anabas_testudineus
ENSSFOG00015013055	rnpc3	90	59.375	ENSAPLG00000015605	RNPC3	99	58.929	Anas_platyrhynchos
ENSSFOG00015013055	rnpc3	98	59.267	ENSACAG00000002029	RNPC3	96	58.717	Anolis_carolinensis
ENSSFOG00015013055	rnpc3	99	57.640	ENSANAG00000019950	RNPC3	96	59.363	Aotus_nancymaae
ENSSFOG00015013055	rnpc3	99	69.467	ENSACLG00000014702	rnpc3	99	67.780	Astatotilapia_calliptera
ENSSFOG00015013055	rnpc3	99	67.200	ENSAMXG00000033372	rnpc3	98	68.600	Astyanax_mexicanus
ENSSFOG00015013055	rnpc3	99	58.008	ENSBTAG00000019091	RNPC3	96	59.839	Bos_taurus
ENSSFOG00015013055	rnpc3	99	59.109	ENSCJAG00000035686	RNPC3	95	59.026	Callithrix_jacchus
ENSSFOG00015013055	rnpc3	99	57.367	ENSCAFG00000019972	RNPC3	95	59.394	Canis_familiaris
ENSSFOG00015013055	rnpc3	99	57.367	ENSCAFG00020011300	RNPC3	95	59.394	Canis_lupus_dingo
ENSSFOG00015013055	rnpc3	99	58.434	ENSCHIG00000020361	RNPC3	96	59.237	Capra_hircus
ENSSFOG00015013055	rnpc3	99	57.778	ENSTSYG00000030256	RNPC3	96	57.980	Carlito_syrichta
ENSSFOG00015013055	rnpc3	87	50.670	ENSCAPG00000013600	RNPC3	97	51.501	Cavia_aperea
ENSSFOG00015013055	rnpc3	99	56.809	ENSCPOG00000031638	RNPC3	96	58.800	Cavia_porcellus
ENSSFOG00015013055	rnpc3	99	57.670	ENSCCAG00000024301	RNPC3	96	59.163	Cebus_capucinus
ENSSFOG00015013055	rnpc3	99	57.336	ENSCATG00000002086	RNPC3	96	59.325	Cercocebus_atys
ENSSFOG00015013055	rnpc3	99	46.951	ENSCATG00000035930	-	95	45.510	Cercocebus_atys
ENSSFOG00015013055	rnpc3	99	57.564	ENSCLAG00000005169	RNPC3	96	57.564	Chinchilla_lanigera
ENSSFOG00015013055	rnpc3	99	57.143	ENSCSAG00000001519	RNPC3	96	59.127	Chlorocebus_sabaeus
ENSSFOG00015013055	rnpc3	99	59.674	ENSCPBG00000028311	RNPC3	95	60.081	Chrysemys_picta_bellii
ENSSFOG00015013055	rnpc3	96	36.701	ENSCSAVG00000002800	-	74	55.738	Ciona_savignyi
ENSSFOG00015013055	rnpc3	99	57.171	ENSCANG00000031444	RNPC3	96	58.929	Colobus_angolensis_palliatus
ENSSFOG00015013055	rnpc3	99	55.146	ENSCGRG00001019276	Rnpc3	96	58.483	Cricetulus_griseus_chok1gshd
ENSSFOG00015013055	rnpc3	88	56.034	ENSCGRG00000000053	Rnpc3	99	56.863	Cricetulus_griseus_crigri
ENSSFOG00015013055	rnpc3	99	66.735	ENSCSEG00000013475	rnpc3	97	66.735	Cynoglossus_semilaevis
ENSSFOG00015013055	rnpc3	99	66.866	ENSCVAG00000002645	rnpc3	97	68.064	Cyprinodon_variegatus
ENSSFOG00015013055	rnpc3	99	68.182	ENSDARG00000011247	rnpc3	96	73.333	Danio_rerio
ENSSFOG00015013055	rnpc3	99	58.566	ENSDNOG00000047498	-	96	58.367	Dasypus_novemcinctus
ENSSFOG00015013055	rnpc3	99	58.167	ENSDNOG00000044555	-	96	57.968	Dasypus_novemcinctus
ENSSFOG00015013055	rnpc3	99	56.809	ENSDORG00000027343	Rnpc3	96	58.800	Dipodomys_ordii
ENSSFOG00015013055	rnpc3	98	52.071	ENSEBUG00000002068	rnpc3	96	50.984	Eptatretus_burgeri
ENSSFOG00015013055	rnpc3	99	57.283	ENSEASG00005015957	RNPC3	95	59.312	Equus_asinus_asinus
ENSSFOG00015013055	rnpc3	99	57.282	ENSECAG00000021148	RNPC3	95	59.281	Equus_caballus
ENSSFOG00015013055	rnpc3	99	71.063	ENSELUG00000002264	rnpc3	99	70.769	Esox_lucius
ENSSFOG00015013055	rnpc3	99	57.946	ENSFCAG00000024312	RNPC3	95	59.960	Felis_catus
ENSSFOG00015013055	rnpc3	90	58.929	ENSFALG00000002580	RNPC3	99	60.185	Ficedula_albicollis
ENSSFOG00015013055	rnpc3	99	56.489	ENSFDAG00000019948	RNPC3	96	58.431	Fukomys_damarensis
ENSSFOG00015013055	rnpc3	99	65.638	ENSFHEG00000020647	rnpc3	97	65.638	Fundulus_heteroclitus
ENSSFOG00015013055	rnpc3	99	66.667	ENSGMOG00000019213	rnpc3	99	64.497	Gadus_morhua
ENSSFOG00015013055	rnpc3	99	60.123	ENSGALG00000005162	RNPC3	89	59.509	Gallus_gallus
ENSSFOG00015013055	rnpc3	99	66.600	ENSGAFG00000017236	rnpc3	99	64.786	Gambusia_affinis
ENSSFOG00015013055	rnpc3	99	68.357	ENSGACG00000002048	rnpc3	99	66.019	Gasterosteus_aculeatus
ENSSFOG00015013055	rnpc3	99	59.674	ENSGAGG00000008438	RNPC3	95	60.081	Gopherus_agassizii
ENSSFOG00015013055	rnpc3	98	52.686	ENSGGOG00000026201	-	94	52.066	Gorilla_gorilla
ENSSFOG00015013055	rnpc3	81	75.676	ENSHBUG00000015966	rnpc3	82	75.676	Haplochromis_burtoni
ENSSFOG00015013055	rnpc3	99	56.298	ENSHGLG00000001708	RNPC3	96	58.235	Heterocephalus_glaber_female
ENSSFOG00015013055	rnpc3	99	56.298	ENSHGLG00100003005	RNPC3	96	58.235	Heterocephalus_glaber_male
ENSSFOG00015013055	rnpc3	99	66.667	ENSHCOG00000017135	rnpc3	98	66.331	Hippocampus_comes
ENSSFOG00015013055	rnpc3	99	68.283	ENSIPUG00000002916	rnpc3	99	67.653	Ictalurus_punctatus
ENSSFOG00015013055	rnpc3	99	56.977	ENSSTOG00000025020	RNPC3	96	58.964	Ictidomys_tridecemlineatus
ENSSFOG00015013055	rnpc3	98	56.238	ENSJJAG00000010203	Rnpc3	96	58.350	Jaculus_jaculus
ENSSFOG00015013055	rnpc3	99	68.443	ENSKMAG00000017358	rnpc3	99	68.663	Kryptolebias_marmoratus
ENSSFOG00015013055	rnpc3	99	68.421	ENSLBEG00000024901	rnpc3	98	66.342	Labrus_bergylta
ENSSFOG00015013055	rnpc3	99	65.244	ENSLACG00000005720	RNPC3	93	63.035	Latimeria_chalumnae
ENSSFOG00015013055	rnpc3	99	69.231	ENSLOCG00000007986	rnpc3	99	68.651	Lepisosteus_oculatus
ENSSFOG00015013055	rnpc3	99	57.000	ENSLAFG00000032342	RNPC3	96	58.400	Loxodonta_africana
ENSSFOG00015013055	rnpc3	99	57.143	ENSMFAG00000002004	RNPC3	96	59.127	Macaca_fascicularis
ENSSFOG00015013055	rnpc3	99	47.581	ENSMFAG00000002917	-	95	45.102	Macaca_fascicularis
ENSSFOG00015013055	rnpc3	99	56.950	ENSMMUG00000018039	RNPC3	96	58.929	Macaca_mulatta
ENSSFOG00015013055	rnpc3	80	57.143	ENSMMUG00000002098	-	86	56.190	Macaca_mulatta
ENSSFOG00015013055	rnpc3	99	54.054	ENSMNEG00000033950	RNPC3	96	55.952	Macaca_nemestrina
ENSSFOG00015013055	rnpc3	99	44.650	ENSMNEG00000029209	-	95	44.581	Macaca_nemestrina
ENSSFOG00015013055	rnpc3	99	57.336	ENSMLEG00000033628	RNPC3	96	59.325	Mandrillus_leucophaeus
ENSSFOG00015013055	rnpc3	99	46.586	ENSMLEG00000034644	-	95	46.185	Mandrillus_leucophaeus
ENSSFOG00015013055	rnpc3	98	63.692	ENSMAMG00000007496	rnpc3	96	63.692	Mastacembelus_armatus
ENSSFOG00015013055	rnpc3	99	67.594	ENSMZEG00005020233	rnpc3	99	67.121	Maylandia_zebra
ENSSFOG00015013055	rnpc3	90	60.132	ENSMGAG00000006381	RNPC3	99	59.471	Meleagris_gallopavo
ENSSFOG00015013055	rnpc3	99	56.445	ENSMAUG00000001358	Rnpc3	96	58.032	Mesocricetus_auratus
ENSSFOG00015013055	rnpc3	99	59.596	ENSMICG00000029591	RNPC3	96	59.798	Microcebus_murinus
ENSSFOG00015013055	rnpc3	99	55.426	ENSMOCG00000013423	Rnpc3	95	58.566	Microtus_ochrogaster
ENSSFOG00015013055	rnpc3	99	65.844	ENSMMOG00000005309	rnpc3	97	66.255	Mola_mola
ENSSFOG00015013055	rnpc3	99	58.418	ENSMODG00000002946	RNPC3	95	58.621	Monodelphis_domestica
ENSSFOG00015013055	rnpc3	99	63.855	ENSMALG00000015471	rnpc3	99	63.458	Monopterus_albus
ENSSFOG00015013055	rnpc3	99	55.490	MGP_CAROLIEiJ_G0025555	Rnpc3	97	59.073	Mus_caroli
ENSSFOG00015013055	rnpc3	99	55.859	ENSMUSG00000027981	Rnpc3	99	57.940	Mus_musculus
ENSSFOG00015013055	rnpc3	99	55.664	MGP_PahariEiJ_G0027001	Rnpc3	97	59.237	Mus_pahari
ENSSFOG00015013055	rnpc3	99	56.055	MGP_SPRETEiJ_G0026505	Rnpc3	97	59.438	Mus_spretus
ENSSFOG00015013055	rnpc3	99	57.422	ENSMPUG00000007349	RNPC3	95	59.438	Mustela_putorius_furo
ENSSFOG00015013055	rnpc3	99	55.382	ENSMLUG00000028743	RNPC3	95	58.753	Myotis_lucifugus
ENSSFOG00015013055	rnpc3	99	56.977	ENSNGAG00000010939	Rnpc3	96	58.964	Nannospalax_galili
ENSSFOG00015013055	rnpc3	99	69.672	ENSNBRG00000012196	rnpc3	96	68.119	Neolamprologus_brichardi
ENSSFOG00015013055	rnpc3	99	57.308	ENSNLEG00000012013	RNPC3	96	59.289	Nomascus_leucogenys
ENSSFOG00015013055	rnpc3	96	59.200	ENSODEG00000007612	RNPC3	96	58.071	Octodon_degus
ENSSFOG00015013055	rnpc3	99	68.410	ENSONIG00000004770	rnpc3	99	69.121	Oreochromis_niloticus
ENSSFOG00015013055	rnpc3	91	59.615	ENSOANG00000008220	RNPC3	99	59.829	Ornithorhynchus_anatinus
ENSSFOG00015013055	rnpc3	99	58.765	ENSOCUG00000004016	RNPC3	96	59.163	Oryctolagus_cuniculus
ENSSFOG00015013055	rnpc3	99	67.073	ENSORLG00000005694	rnpc3	98	67.073	Oryzias_latipes
ENSSFOG00015013055	rnpc3	99	67.470	ENSORLG00020005513	rnpc3	98	67.470	Oryzias_latipes_hni
ENSSFOG00015013055	rnpc3	99	67.617	ENSORLG00015002179	rnpc3	98	67.617	Oryzias_latipes_hsok
ENSSFOG00015013055	rnpc3	99	67.413	ENSOMEG00000017737	rnpc3	99	66.469	Oryzias_melastigma
ENSSFOG00015013055	rnpc3	99	60.202	ENSOGAG00000026182	RNPC3	95	60.404	Otolemur_garnettii
ENSSFOG00015013055	rnpc3	99	58.434	ENSOARG00000018719	RNPC3	96	59.237	Ovis_aries
ENSSFOG00015013055	rnpc3	99	57.255	ENSPPAG00000037459	RNPC3	96	59.274	Pan_paniscus
ENSSFOG00015013055	rnpc3	98	52.479	ENSPPAG00000030278	-	95	51.646	Pan_paniscus
ENSSFOG00015013055	rnpc3	99	58.171	ENSPPRG00000020246	RNPC3	95	60.200	Panthera_pardus
ENSSFOG00015013055	rnpc3	99	58.171	ENSPTIG00000009887	RNPC3	97	60.200	Panthera_tigris_altaica
ENSSFOG00015013055	rnpc3	97	52.708	ENSPTRG00000044227	-	95	52.401	Pan_troglodytes
ENSSFOG00015013055	rnpc3	99	57.364	ENSPTRG00000033902	RNPC3	96	59.363	Pan_troglodytes
ENSSFOG00015013055	rnpc3	99	50.101	ENSPANG00000029957	-	97	47.251	Papio_anubis
ENSSFOG00015013055	rnpc3	99	57.088	ENSPANG00000012137	RNPC3	96	59.055	Papio_anubis
ENSSFOG00015013055	rnpc3	99	73.239	ENSPKIG00000008828	rnpc3	99	72.904	Paramormyrops_kingsleyae
ENSSFOG00015013055	rnpc3	65	57.055	ENSPSIG00000007396	RNPC3	99	57.669	Pelodiscus_sinensis
ENSSFOG00015013055	rnpc3	98	61.866	ENSPMGG00000011742	rnpc3	97	61.460	Periophthalmus_magnuspinnatus
ENSSFOG00015013055	rnpc3	88	55.819	ENSPEMG00000020112	Rnpc3	99	56.427	Peromyscus_maniculatus_bairdii
ENSSFOG00015013055	rnpc3	98	42.884	ENSPMAG00000003778	rnpc3	96	47.389	Petromyzon_marinus
ENSSFOG00015013055	rnpc3	99	56.607	ENSPCIG00000004415	-	95	58.824	Phascolarctos_cinereus
ENSSFOG00015013055	rnpc3	97	67.800	ENSPFOG00000009895	rnpc3	97	68.072	Poecilia_formosa
ENSSFOG00015013055	rnpc3	97	68.000	ENSPLAG00000012023	rnpc3	97	68.273	Poecilia_latipinna
ENSSFOG00015013055	rnpc3	97	67.800	ENSPMEG00000003663	rnpc3	97	68.072	Poecilia_mexicana
ENSSFOG00015013055	rnpc3	99	65.820	ENSPREG00000010206	rnpc3	99	65.820	Poecilia_reticulata
ENSSFOG00015013055	rnpc3	82	53.333	ENSPPYG00000001102	RNPC3	94	55.107	Pongo_abelii
ENSSFOG00015013055	rnpc3	99	69.262	ENSPNYG00000020603	rnpc3	99	67.583	Pundamilia_nyererei
ENSSFOG00015013055	rnpc3	99	61.508	ENSPNAG00000000524	rnpc3	92	60.501	Pygocentrus_nattereri
ENSSFOG00015013055	rnpc3	99	57.171	ENSRNOG00000017310	Rnpc3	96	58.918	Rattus_norvegicus
ENSSFOG00015013055	rnpc3	99	52.930	ENSRBIG00000043897	RNPC3	96	54.418	Rhinopithecus_bieti
ENSSFOG00015013055	rnpc3	99	57.336	ENSRROG00000032334	RNPC3	96	59.325	Rhinopithecus_roxellana
ENSSFOG00015013055	rnpc3	99	57.253	ENSSBOG00000024473	RNPC3	95	58.730	Saimiri_boliviensis_boliviensis
ENSSFOG00015013055	rnpc3	99	58.418	ENSSHAG00000011859	RNPC3	96	58.621	Sarcophilus_harrisii
ENSSFOG00015013055	rnpc3	99	64.343	ENSSMAG00000020346	rnpc3	97	64.542	Scophthalmus_maximus
ENSSFOG00015013055	rnpc3	99	69.600	ENSSDUG00000006600	rnpc3	99	68.288	Seriola_dumerili
ENSSFOG00015013055	rnpc3	99	70.000	ENSSLDG00000007979	rnpc3	99	68.340	Seriola_lalandi_dorsalis
ENSSFOG00015013055	rnpc3	99	55.306	ENSSPUG00000003872	-	92	55.510	Sphenodon_punctatus
ENSSFOG00015013055	rnpc3	99	60.446	ENSSPUG00000008539	-	94	59.959	Sphenodon_punctatus
ENSSFOG00015013055	rnpc3	99	69.610	ENSSPAG00000005633	rnpc3	99	68.862	Stegastes_partitus
ENSSFOG00015013055	rnpc3	99	60.400	ENSSSCG00000037254	RNPC3	96	60.400	Sus_scrofa
ENSSFOG00015013055	rnpc3	90	59.375	ENSTGUG00000004795	-	99	60.938	Taeniopygia_guttata
ENSSFOG00015013055	rnpc3	99	67.755	ENSTNIG00000018963	rnpc3	100	65.815	Tetraodon_nigroviridis
ENSSFOG00015013055	rnpc3	99	57.977	ENSUMAG00000007775	RNPC3	97	59.596	Ursus_maritimus
ENSSFOG00015013055	rnpc3	99	57.367	ENSVVUG00000000331	RNPC3	95	59.394	Vulpes_vulpes
ENSSFOG00015013055	rnpc3	98	49.109	ENSXETG00000025027	rnpc3	96	48.708	Xenopus_tropicalis
ENSSFOG00015013055	rnpc3	99	67.404	ENSXCOG00000005013	rnpc3	97	67.404	Xiphophorus_couchianus
ENSSFOG00015013055	rnpc3	99	67.203	ENSXMAG00000006495	rnpc3	97	67.203	Xiphophorus_maculatus